HEADER LYASE 28-DEC-05 2CB1 TITLE CRYSTAL STRUCTURE OF O-ACTETYL HOMOSERINE SULFHYDRYLASE FROM THERMUS TITLE 2 THERMOPHILUS HB8,OAH2. COMPND MOL_ID: 1; COMPND 2 MOLECULE: O-ACETYL HOMOSERINE SULFHYDRYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: O-ACETYL-L-HOMOSERINE SULFHYDRYLASE; COMPND 5 EC: 4.2.99.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET11B KEYWDS PLP ENZYME, SULFHYDRYLASE, HOMOSERINE, LYASE, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR T.IMAGAWA,H.UTSUNOMIYA,H.TSUGE,A.EBIHARA,M.KANAGAWA,N.NAKAGAWA, AUTHOR 2 C.KUROISHI,Y.AGARI,S.KURAMITSU,S.YOKOYAMA REVDAT 5 13-DEC-23 2CB1 1 REMARK LINK REVDAT 4 16-DEC-15 2CB1 1 SOURCE KEYWDS AUTHOR JRNL REVDAT 4 2 1 REMARK VERSN SEQRES HET REVDAT 4 3 1 HETNAM HETSYN FORMUL MODRES REVDAT 4 4 1 LINK SITE ATOM TER REVDAT 4 5 1 HETATM CONECT MASTER REVDAT 3 24-FEB-09 2CB1 1 VERSN REVDAT 2 20-FEB-07 2CB1 1 REMARK SEQRES ATOM MASTER REVDAT 1 03-JAN-07 2CB1 0 JRNL AUTH T.IMAGAWA,H.UTSUNOMIYA,Y.AGARI,S.SATOH,H.TSUGE JRNL TITL THE CRYSTAL STRUCTURE OF O-ACETYL HOMOSERINE SULFHYDRYLASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 24539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1314 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1690 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.2140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3059 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 147 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.57000 REMARK 3 B22 (A**2) : 1.65000 REMARK 3 B33 (A**2) : -2.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.201 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.019 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3136 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4269 ; 2.028 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 402 ; 6.756 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;32.246 ;22.698 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 498 ;16.317 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;22.206 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 494 ; 0.148 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2364 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1484 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2136 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 171 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 96 ; 0.225 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2082 ; 1.429 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3185 ; 2.023 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1232 ; 3.531 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1084 ; 5.307 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2CB1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1290026974. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25853 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1E5F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.99300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.19600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 78.06900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.99300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.19600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 78.06900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.99300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.19600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.06900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.99300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.19600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.06900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -141.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 156.13800 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 55.98600 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 156.13800 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 55.98600 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 232 REMARK 465 ASP A 233 REMARK 465 LEU A 234 REMARK 465 LYS A 235 REMARK 465 GLY A 236 REMARK 465 GLN A 237 REMARK 465 ILE A 238 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 412 CA C O CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 59 CE LYS A 59 NZ 0.181 REMARK 500 ARG A 244 CG ARG A 244 CD 0.165 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 244 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 282 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 358 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 49 -36.19 -134.34 REMARK 500 LYS A 202 -111.02 -88.38 REMARK 500 SER A 209 -77.95 -105.90 REMARK 500 ARG A 244 -132.95 51.91 REMARK 500 THR A 369 -91.57 -130.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 103 LEU A 104 -148.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 1202 DBREF 2CB1 A 1 412 UNP Q76K51 Q76K51_THETH 1 412 SEQRES 1 A 412 MET GLU TYR THR THR LEU ALA VAL LEU ALA GLY LEU PRO SEQRES 2 A 412 GLU ASP PRO HIS GLY ALA VAL GLY LEU PRO ILE TYR ALA SEQRES 3 A 412 VAL ALA ALA TYR GLY PHE LYS THR LEU GLU GLU GLY GLN SEQRES 4 A 412 GLU ARG PHE ALA THR GLY GLU GLY TYR VAL TYR ALA ARG SEQRES 5 A 412 GLN LYS ASP PRO THR ALA LYS ALA LEU GLU GLU ARG LEU SEQRES 6 A 412 LYS ALA LEU GLU GLY ALA LEU GLU ALA VAL VAL LEU ALA SEQRES 7 A 412 SER GLY GLN ALA ALA THR PHE ALA ALA LEU LEU ALA LEU SEQRES 8 A 412 LEU ARG PRO GLY ASP GLU VAL VAL ALA ALA LYS GLY LEU SEQRES 9 A 412 PHE GLY GLN THR ILE GLY LEU PHE GLY GLN VAL LEU SER SEQRES 10 A 412 LEU MET GLY VAL THR VAL ARG TYR VAL ASP PRO GLU PRO SEQRES 11 A 412 GLU ALA VAL ARG GLU ALA LEU SER ALA LYS THR ARG ALA SEQRES 12 A 412 VAL PHE VAL GLU THR VAL ALA ASN PRO ALA LEU LEU VAL SEQRES 13 A 412 PRO ASP LEU GLU ALA LEU ALA THR LEU ALA GLU GLU ALA SEQRES 14 A 412 GLY VAL ALA LEU VAL VAL ASP ASN THR PHE GLY ALA ALA SEQRES 15 A 412 GLY ALA LEU CYS ARG PRO LEU ALA TRP GLY ALA HIS VAL SEQRES 16 A 412 VAL VAL GLU SER LEU THR LYS TRP ALA SER GLY HIS GLY SEQRES 17 A 412 SER VAL LEU GLY GLY ALA VAL LEU SER ARG GLU THR GLU SEQRES 18 A 412 LEU TRP ARG ASN TYR PRO GLN PHE LEU GLN PRO ASP LEU SEQRES 19 A 412 LYS GLY GLN ILE PRO TRP GLU ALA LEU ARG ALA ARG CYS SEQRES 20 A 412 PHE PRO GLU ARG VAL ARG THR LEU GLY LEU SER LEU CYS SEQRES 21 A 412 GLY MET ALA LEU SER PRO PHE ASN ALA TYR LEU LEU PHE SEQRES 22 A 412 GLN GLY LEU GLU THR VAL ALA LEU ARG VAL ALA ARG MET SEQRES 23 A 412 SER GLU THR ALA ARG PHE LEU ALA GLU ARG LEU GLN GLY SEQRES 24 A 412 HIS PRO LYS VAL LYS ALA LEU ARG TYR PRO GLY LEU PRO SEQRES 25 A 412 GLU ASP PRO ALA HIS ARG ASN ALA ARG LYS TYR LEU ALA SEQRES 26 A 412 SER GLY GLY PRO ILE LEU THR LEU ASP LEU GLY ASP LEU SEQRES 27 A 412 GLU ARG ALA SER ARG PHE LEU GLY ALA ILE ARG LEU LEU SEQRES 28 A 412 LYS ALA ALA ASN LEU GLY ASP ALA ARG THR LEU LEU VAL SEQRES 29 A 412 HIS PRO TRP THR THR THR HIS SER ARG LEU LYS GLU GLU SEQRES 30 A 412 ALA ARG LEU GLN ALA GLY VAL THR PRO GLY LEU VAL ARG SEQRES 31 A 412 VAL SER VAL GLY LEU GLU ASP PRO LEU ASP LEU LEU ALA SEQRES 32 A 412 LEU PHE GLU GLU ALA LEU GLU ALA VAL HET PLP A1202 15 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 2 PLP C8 H10 N O6 P FORMUL 3 HOH *147(H2 O) HELIX 1 1 GLU A 2 ALA A 10 1 9 HELIX 2 2 THR A 34 GLY A 45 1 12 HELIX 3 3 ASP A 55 GLY A 70 1 16 HELIX 4 4 SER A 79 ALA A 90 1 12 HELIX 5 5 PHE A 105 VAL A 115 1 11 HELIX 6 6 GLU A 129 LEU A 137 1 9 HELIX 7 7 ASP A 158 GLY A 170 1 13 HELIX 8 8 THR A 178 ALA A 181 5 4 HELIX 9 9 ARG A 187 GLY A 192 5 6 HELIX 10 10 GLU A 221 TYR A 226 5 6 HELIX 11 11 TYR A 226 GLN A 231 5 6 HELIX 12 12 PRO A 239 ARG A 244 1 6 HELIX 13 13 ARG A 246 LEU A 257 1 12 HELIX 14 14 SER A 265 LEU A 276 1 12 HELIX 15 15 THR A 278 GLY A 299 1 22 HELIX 16 16 ALA A 316 LEU A 324 1 9 HELIX 17 17 ASP A 337 ILE A 348 1 12 HELIX 18 18 LYS A 375 ALA A 382 1 8 HELIX 19 19 ASP A 397 ALA A 411 1 15 SHEET 1 AA 7 GLU A 73 LEU A 77 0 SHEET 2 AA 7 GLY A 213 SER A 217 -1 O GLY A 213 N LEU A 77 SHEET 3 AA 7 VAL A 195 SER A 199 -1 O VAL A 196 N LEU A 216 SHEET 4 AA 7 ALA A 172 ASP A 176 1 O LEU A 173 N VAL A 195 SHEET 5 AA 7 THR A 141 GLU A 147 1 O ARG A 142 N ALA A 172 SHEET 6 AA 7 GLU A 97 ALA A 101 1 O GLU A 97 N ARG A 142 SHEET 7 AA 7 THR A 122 VAL A 126 1 O THR A 122 N VAL A 98 SHEET 1 AB 5 ALA A 305 ARG A 307 0 SHEET 2 AB 5 ILE A 330 ASP A 334 -1 O THR A 332 N ARG A 307 SHEET 3 AB 5 LEU A 388 SER A 392 -1 O VAL A 389 N LEU A 333 SHEET 4 AB 5 LEU A 362 VAL A 364 -1 O LEU A 362 N SER A 392 SHEET 5 AB 5 LEU A 351 LYS A 352 1 O LEU A 351 N LEU A 363 LINK NZ LYS A 202 C4A PLP A1202 1555 1555 1.38 CISPEP 1 ASN A 151 PRO A 152 0 -0.30 SITE 1 AC1 12 TYR A 50 ARG A 52 SER A 79 GLY A 80 SITE 2 AC1 12 GLN A 81 PHE A 105 ASP A 176 THR A 178 SITE 3 AC1 12 SER A 199 THR A 201 LYS A 202 GLY A 212 CRYST1 55.986 86.392 156.138 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017862 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011575 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006405 0.00000