HEADER IMMUNE SYSTEM 29-DEC-05 2CB3 TITLE CRYSTAL STRUCTURE OF PEPTIDOGLYCAN RECOGNITION PROTEIN-LE IN COMPLEX TITLE 2 WITH TRACHEAL CYTOTOXIN (MONOMERIC DIAMINOPIMELIC ACID-TYPE TITLE 3 PEPTIDOGLYCAN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN-RECOGNITION PROTEIN-LE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 173-345; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: PEPTIDOGLYCAN RECOGNITION PROTEIN-LE IN COMPLEX WITH COMPND 8 TRACHEAL CYTOTOXIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PGRP, TRACHEAL CYTOTOXIN, INNATE IMMUNITY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.-H.LIM,M.-S.KIM,B.-H.OH REVDAT 3 13-DEC-23 2CB3 1 REMARK REVDAT 2 24-FEB-09 2CB3 1 VERSN REVDAT 1 26-JAN-06 2CB3 0 JRNL AUTH J.-H.LIM,M.-S.KIM,H.-E.KIM,T.YANO,Y.OSHIMA,K.AGGARWAL, JRNL AUTH 2 W.E.GOLDMAN,N.SILVERMAN,S.KURATA,B.-H.OH JRNL TITL STRUCTURAL BASIS FOR PREFERENTIAL RECOGNITION OF JRNL TITL 2 DIAMINOPIMELIC ACID-TYPE PEPTIDOGLYCAN BY A SUBSET OF JRNL TITL 3 PEPTIDOGLYCAN RECOGNITION PROTEINS JRNL REF J.BIOL.CHEM. V. 281 8286 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16428381 JRNL DOI 10.1074/JBC.M513030200 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 61492 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3103 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5475 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 262 REMARK 3 SOLVENT ATOMS : 205 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.305 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 28.54 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : MLD.PAR REMARK 3 PARAMETER FILE 5 : GLY.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CB3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1290026979. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66354 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1OHT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 108.76500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 108.76500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 108.76500 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 108.76500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 108.76500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 108.76500 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 108.76500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 108.76500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 108.76500 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 108.76500 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 108.76500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 108.76500 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 108.76500 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 108.76500 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 108.76500 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 108.76500 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 108.76500 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 108.76500 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 108.76500 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 108.76500 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 108.76500 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 108.76500 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 108.76500 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 108.76500 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 108.76500 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 108.76500 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 108.76500 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 108.76500 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 108.76500 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 108.76500 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 108.76500 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 108.76500 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 108.76500 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 108.76500 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 108.76500 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 108.76500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE FOUR MOLECULES IN THE ASYMMETRIC UNIT REMARK 300 FORM A REPEATINGUNIT OF AN INFINITE FIBER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 227 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN B, CYS 227 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN C, CYS 227 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN D, CYS 227 TO SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 171 REMARK 465 HIS A 172 REMARK 465 GLU A 173 REMARK 465 GLN A 345 REMARK 465 GLY B 171 REMARK 465 HIS B 172 REMARK 465 GLU B 173 REMARK 465 LEU B 174 REMARK 465 GLN B 345 REMARK 465 GLN C 345 REMARK 465 GLY D 171 REMARK 465 HIS D 172 REMARK 465 GLU D 173 REMARK 465 GLN D 345 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 344 CA C O CB CG CD OE1 REMARK 470 GLU A 344 OE2 REMARK 470 GLU B 344 CA C O CB CG CD OE1 REMARK 470 GLU B 344 OE2 REMARK 470 GLU C 344 CA C O CB CG CD OE1 REMARK 470 GLU C 344 OE2 REMARK 470 GLU D 344 CA C O CB CG CD OE1 REMARK 470 GLU D 344 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 227 CB SER A 227 OG 0.338 REMARK 500 SER B 227 CB SER B 227 OG 0.343 REMARK 500 SER C 227 CB SER C 227 OG 0.349 REMARK 500 SER D 227 CB SER D 227 OG 0.359 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 336 -4.46 80.13 REMARK 500 GLU A 343 -52.34 -149.22 REMARK 500 ALA B 261 43.31 -147.03 REMARK 500 PHE B 279 52.01 -106.10 REMARK 500 HIS B 336 -15.22 88.63 REMARK 500 LEU C 174 -24.85 -38.59 REMARK 500 THR C 209 -169.91 -118.37 REMARK 500 ALA C 261 45.71 -140.99 REMARK 500 PHE C 279 47.64 -108.75 REMARK 500 HIS C 336 -3.63 86.89 REMARK 500 PHE D 279 49.38 -105.25 REMARK 500 HIS D 336 -10.71 81.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLD A1345 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLD B1344 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLD C1344 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLD D1344 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1344 DBREF 2CB3 A 171 172 PDB 2CB3 2CB3 171 172 DBREF 2CB3 A 173 345 UNP Q9VXN9 PGPLE_DROME 173 345 DBREF 2CB3 B 171 172 PDB 2CB3 2CB3 171 172 DBREF 2CB3 B 173 345 UNP Q9VXN9 PGPLE_DROME 173 345 DBREF 2CB3 C 171 172 PDB 2CB3 2CB3 171 172 DBREF 2CB3 C 173 345 UNP Q9VXN9 PGPLE_DROME 173 345 DBREF 2CB3 D 171 172 PDB 2CB3 2CB3 171 172 DBREF 2CB3 D 173 345 UNP Q9VXN9 PGPLE_DROME 173 345 SEQADV 2CB3 SER A 227 UNP Q9VXN9 CYS 227 ENGINEERED MUTATION SEQADV 2CB3 SER B 227 UNP Q9VXN9 CYS 227 ENGINEERED MUTATION SEQADV 2CB3 SER C 227 UNP Q9VXN9 CYS 227 ENGINEERED MUTATION SEQADV 2CB3 SER D 227 UNP Q9VXN9 CYS 227 ENGINEERED MUTATION SEQRES 1 A 175 GLY HIS GLU LEU SER ALA ILE ILE PRO ARG SER SER TRP SEQRES 2 A 175 LEU ALA GLN LYS PRO MET ASP GLU PRO LEU PRO LEU GLN SEQRES 3 A 175 LEU PRO VAL LYS TYR VAL VAL ILE LEU HIS THR ALA THR SEQRES 4 A 175 GLU SER SER GLU LYS ARG ALA ILE ASN VAL ARG LEU ILE SEQRES 5 A 175 ARG ASP MET GLN SER PHE HIS ILE GLU SER ARG GLY TRP SEQRES 6 A 175 ASN ASP ILE ALA TYR ASN PHE LEU VAL GLY CYS ASP GLY SEQRES 7 A 175 ASN ILE TYR GLU GLY ARG GLY TRP LYS THR VAL GLY ALA SEQRES 8 A 175 HIS THR LEU GLY TYR ASN ARG ILE SER LEU GLY ILE SER SEQRES 9 A 175 PHE ILE GLY CYS PHE MET LYS GLU LEU PRO THR ALA ASP SEQRES 10 A 175 ALA LEU ASN MET CYS ARG ASN LEU LEU ALA ARG GLY VAL SEQRES 11 A 175 GLU ASP GLY HIS ILE SER THR ASP TYR ARG LEU ILE CYS SEQRES 12 A 175 HIS CYS GLN CYS ASN SER THR GLU SER PRO GLY ARG ARG SEQRES 13 A 175 LEU TYR GLU GLU ILE GLN THR TRP PRO HIS PHE TYR ASN SEQRES 14 A 175 ILE GLU GLU GLU GLU GLN SEQRES 1 B 175 GLY HIS GLU LEU SER ALA ILE ILE PRO ARG SER SER TRP SEQRES 2 B 175 LEU ALA GLN LYS PRO MET ASP GLU PRO LEU PRO LEU GLN SEQRES 3 B 175 LEU PRO VAL LYS TYR VAL VAL ILE LEU HIS THR ALA THR SEQRES 4 B 175 GLU SER SER GLU LYS ARG ALA ILE ASN VAL ARG LEU ILE SEQRES 5 B 175 ARG ASP MET GLN SER PHE HIS ILE GLU SER ARG GLY TRP SEQRES 6 B 175 ASN ASP ILE ALA TYR ASN PHE LEU VAL GLY CYS ASP GLY SEQRES 7 B 175 ASN ILE TYR GLU GLY ARG GLY TRP LYS THR VAL GLY ALA SEQRES 8 B 175 HIS THR LEU GLY TYR ASN ARG ILE SER LEU GLY ILE SER SEQRES 9 B 175 PHE ILE GLY CYS PHE MET LYS GLU LEU PRO THR ALA ASP SEQRES 10 B 175 ALA LEU ASN MET CYS ARG ASN LEU LEU ALA ARG GLY VAL SEQRES 11 B 175 GLU ASP GLY HIS ILE SER THR ASP TYR ARG LEU ILE CYS SEQRES 12 B 175 HIS CYS GLN CYS ASN SER THR GLU SER PRO GLY ARG ARG SEQRES 13 B 175 LEU TYR GLU GLU ILE GLN THR TRP PRO HIS PHE TYR ASN SEQRES 14 B 175 ILE GLU GLU GLU GLU GLN SEQRES 1 C 175 GLY HIS GLU LEU SER ALA ILE ILE PRO ARG SER SER TRP SEQRES 2 C 175 LEU ALA GLN LYS PRO MET ASP GLU PRO LEU PRO LEU GLN SEQRES 3 C 175 LEU PRO VAL LYS TYR VAL VAL ILE LEU HIS THR ALA THR SEQRES 4 C 175 GLU SER SER GLU LYS ARG ALA ILE ASN VAL ARG LEU ILE SEQRES 5 C 175 ARG ASP MET GLN SER PHE HIS ILE GLU SER ARG GLY TRP SEQRES 6 C 175 ASN ASP ILE ALA TYR ASN PHE LEU VAL GLY CYS ASP GLY SEQRES 7 C 175 ASN ILE TYR GLU GLY ARG GLY TRP LYS THR VAL GLY ALA SEQRES 8 C 175 HIS THR LEU GLY TYR ASN ARG ILE SER LEU GLY ILE SER SEQRES 9 C 175 PHE ILE GLY CYS PHE MET LYS GLU LEU PRO THR ALA ASP SEQRES 10 C 175 ALA LEU ASN MET CYS ARG ASN LEU LEU ALA ARG GLY VAL SEQRES 11 C 175 GLU ASP GLY HIS ILE SER THR ASP TYR ARG LEU ILE CYS SEQRES 12 C 175 HIS CYS GLN CYS ASN SER THR GLU SER PRO GLY ARG ARG SEQRES 13 C 175 LEU TYR GLU GLU ILE GLN THR TRP PRO HIS PHE TYR ASN SEQRES 14 C 175 ILE GLU GLU GLU GLU GLN SEQRES 1 D 175 GLY HIS GLU LEU SER ALA ILE ILE PRO ARG SER SER TRP SEQRES 2 D 175 LEU ALA GLN LYS PRO MET ASP GLU PRO LEU PRO LEU GLN SEQRES 3 D 175 LEU PRO VAL LYS TYR VAL VAL ILE LEU HIS THR ALA THR SEQRES 4 D 175 GLU SER SER GLU LYS ARG ALA ILE ASN VAL ARG LEU ILE SEQRES 5 D 175 ARG ASP MET GLN SER PHE HIS ILE GLU SER ARG GLY TRP SEQRES 6 D 175 ASN ASP ILE ALA TYR ASN PHE LEU VAL GLY CYS ASP GLY SEQRES 7 D 175 ASN ILE TYR GLU GLY ARG GLY TRP LYS THR VAL GLY ALA SEQRES 8 D 175 HIS THR LEU GLY TYR ASN ARG ILE SER LEU GLY ILE SER SEQRES 9 D 175 PHE ILE GLY CYS PHE MET LYS GLU LEU PRO THR ALA ASP SEQRES 10 D 175 ALA LEU ASN MET CYS ARG ASN LEU LEU ALA ARG GLY VAL SEQRES 11 D 175 GLU ASP GLY HIS ILE SER THR ASP TYR ARG LEU ILE CYS SEQRES 12 D 175 HIS CYS GLN CYS ASN SER THR GLU SER PRO GLY ARG ARG SEQRES 13 D 175 LEU TYR GLU GLU ILE GLN THR TRP PRO HIS PHE TYR ASN SEQRES 14 D 175 ILE GLU GLU GLU GLU GLN HET GOL A1344 6 HET MLD A1345 64 HET MLD B1344 64 HET MLD C1344 64 HET MLD D1344 64 HETNAM GOL GLYCEROL HETNAM MLD GLCNAC(BETA1-4)-MURNAC(1,6-ANHYDRO)-L-ALA-GAMMA-D-GLU- HETNAM 2 MLD MESO-A2PM-D-ALA HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN MLD 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE(BETA1-4)-2- HETSYN 2 MLD ACETAMIDO-1,6-ANHYDRO-3-O-[(R)-1-CARBOXYETHYL]-2- HETSYN 3 MLD DEOXY-BETA-D-GLUCOPYRANOSE-L-ALANYL-GAMMA-D-GLUTAMYL- HETSYN 4 MLD MESO-DIAMINOPIMELYL-D-ALANINE FORMUL 5 GOL C3 H8 O3 FORMUL 6 MLD 4(C37 H59 N7 O20) FORMUL 10 HOH *205(H2 O) HELIX 1 1 LYS A 214 ARG A 233 1 20 HELIX 2 2 THR A 285 GLY A 303 1 19 HELIX 3 3 GLY A 324 THR A 333 1 10 HELIX 4 4 LYS B 214 ARG B 233 1 20 HELIX 5 5 THR B 285 GLY B 303 1 19 HELIX 6 6 GLY B 324 THR B 333 1 10 HELIX 7 7 LYS C 214 ARG C 233 1 20 HELIX 8 8 THR C 285 GLY C 303 1 19 HELIX 9 9 GLY C 324 THR C 333 1 10 HELIX 10 10 LYS D 214 ARG D 233 1 20 HELIX 11 11 THR D 285 GLY D 303 1 19 HELIX 12 12 GLY D 324 THR D 333 1 10 SHEET 1 AA 7 ASP A 190 GLN A 196 0 SHEET 2 AA 7 ALA A 176 PRO A 179 0 SHEET 3 AA 7 GLY A 248 GLY A 253 1 O ILE A 250 N ILE A 178 SHEET 4 AA 7 ASN A 241 CYS A 246 -1 O LEU A 243 N TYR A 251 SHEET 5 AA 7 ILE A 269 ILE A 276 1 N ILE A 276 O VAL A 244 SHEET 6 AA 7 LYS A 200 HIS A 206 1 O VAL A 203 N ILE A 273 SHEET 7 AA 7 TYR A 309 CYS A 313 1 N ARG A 310 O LYS A 200 SHEET 1 BA 7 ASP B 190 GLN B 196 0 SHEET 2 BA 7 ALA B 176 PRO B 179 0 SHEET 3 BA 7 GLY B 248 GLY B 253 1 O ILE B 250 N ILE B 178 SHEET 4 BA 7 ASN B 241 CYS B 246 -1 O LEU B 243 N TYR B 251 SHEET 5 BA 7 ILE B 269 ILE B 276 1 N ILE B 276 O VAL B 244 SHEET 6 BA 7 LYS B 200 HIS B 206 1 O VAL B 203 N ILE B 273 SHEET 7 BA 7 TYR B 309 CYS B 313 1 N ARG B 310 O LYS B 200 SHEET 1 CA 7 ASP C 190 GLN C 196 0 SHEET 2 CA 7 ALA C 176 PRO C 179 0 SHEET 3 CA 7 GLY C 248 GLY C 253 1 O ILE C 250 N ILE C 178 SHEET 4 CA 7 ASN C 241 CYS C 246 -1 O LEU C 243 N TYR C 251 SHEET 5 CA 7 ILE C 269 ILE C 276 1 N ILE C 276 O VAL C 244 SHEET 6 CA 7 LYS C 200 HIS C 206 1 O VAL C 203 N ILE C 273 SHEET 7 CA 7 TYR C 309 CYS C 313 1 N ARG C 310 O LYS C 200 SHEET 1 DA 7 ASP D 190 GLN D 196 0 SHEET 2 DA 7 ALA D 176 PRO D 179 0 SHEET 3 DA 7 GLY D 248 GLY D 253 1 O ILE D 250 N ILE D 178 SHEET 4 DA 7 ASN D 241 CYS D 246 -1 O LEU D 243 N TYR D 251 SHEET 5 DA 7 ILE D 269 ILE D 276 1 N ILE D 276 O VAL D 244 SHEET 6 DA 7 LYS D 200 HIS D 206 1 O VAL D 203 N ILE D 273 SHEET 7 DA 7 TYR D 309 CYS D 313 1 N ARG D 310 O LYS D 200 CISPEP 1 LEU A 197 PRO A 198 0 -0.01 CISPEP 2 SER A 322 PRO A 323 0 0.54 CISPEP 3 LEU B 197 PRO B 198 0 -0.02 CISPEP 4 SER B 322 PRO B 323 0 0.07 CISPEP 5 LEU C 197 PRO C 198 0 -0.26 CISPEP 6 SER C 322 PRO C 323 0 0.44 CISPEP 7 LEU D 197 PRO D 198 0 0.06 CISPEP 8 SER D 322 PRO D 323 0 0.48 SITE 1 AC1 28 HIS A 206 THR A 207 HIS A 229 ARG A 233 SITE 2 AC1 28 TRP A 235 ASN A 236 TYR A 240 ARG A 254 SITE 3 AC1 28 ALA A 261 HIS A 262 LEU A 264 ASN A 267 SITE 4 AC1 28 HIS A 314 ASN A 318 THR A 320 GLU A 321 SITE 5 AC1 28 SER A 322 HOH A2027 HOH A2038 HOH A2040 SITE 6 AC1 28 HOH A2052 HOH A2054 GLN B 186 ARG B 223 SITE 7 AC1 28 ASP B 224 SER B 227 GLU B 231 ARG D 215 SITE 1 AC2 28 HIS B 206 THR B 207 MET B 225 HIS B 229 SITE 2 AC2 28 ARG B 233 TRP B 235 ASN B 236 TYR B 240 SITE 3 AC2 28 ARG B 254 ALA B 261 HIS B 262 ASN B 267 SITE 4 AC2 28 ARG B 268 HIS B 314 ASN B 318 THR B 320 SITE 5 AC2 28 GLU B 321 SER B 322 HOH B2026 HOH B2042 SITE 6 AC2 28 HOH B2059 HOH B2060 HOH B2062 HOH B2063 SITE 7 AC2 28 ARG C 215 ARG D 223 SER D 227 GLU D 231 SITE 1 AC3 27 ARG A 223 ASP A 224 SER A 227 GLU A 231 SITE 2 AC3 27 ARG B 215 HIS C 206 THR C 207 HIS C 229 SITE 3 AC3 27 ARG C 233 TRP C 235 ASN C 236 TYR C 240 SITE 4 AC3 27 ARG C 254 ALA C 261 HIS C 262 LEU C 264 SITE 5 AC3 27 ASN C 267 HIS C 314 ASN C 318 THR C 320 SITE 6 AC3 27 GLU C 321 SER C 322 HOH C2023 HOH C2033 SITE 7 AC3 27 HOH C2036 HOH C2045 HOH C2048 SITE 1 AC4 28 ARG A 215 ARG C 223 ASP C 224 SER C 227 SITE 2 AC4 28 GLU C 231 HIS D 206 THR D 207 HIS D 229 SITE 3 AC4 28 ARG D 233 TRP D 235 ASN D 236 TYR D 240 SITE 4 AC4 28 ARG D 254 ALA D 261 HIS D 262 LEU D 264 SITE 5 AC4 28 ASN D 267 HIS D 314 ASN D 318 THR D 320 SITE 6 AC4 28 GLU D 321 SER D 322 HOH D2017 HOH D2031 SITE 7 AC4 28 HOH D2033 HOH D2034 HOH D2035 HOH D2037 SITE 1 AC5 7 GLU A 210 SER A 211 GLY A 277 CYS A 278 SITE 2 AC5 7 PHE A 279 GLU A 282 HOH B2006 CRYST1 217.530 217.530 217.530 90.00 90.00 90.00 I 2 3 96 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004597 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004597 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004597 0.00000