HEADER HYDROLASE 02-MAR-99 2CB5 TITLE HUMAN BLEOMYCIN HYDROLASE, C73S/DELE455 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (BLEOMYCIN HYDROLASE); COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.22.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELLULAR_LOCATION: CYTOPLASM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)/PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKH260HUBH-C73SDELE KEYWDS HYDROLASE, AMINOPEPTIDASE, CYSTEINE PROTEASE, SELF- KEYWDS 2 COMPARTMENTALIZING, BLEOMYCIN, CYLINASE EXPDTA X-RAY DIFFRACTION AUTHOR P.A.O'FARRELL,F.GONZALEZ,W.ZHENG,S.A.JOHNSTON,L.JOSHUA-TOR REVDAT 8 23-AUG-23 2CB5 1 REMARK REVDAT 7 03-NOV-21 2CB5 1 REMARK SEQADV REVDAT 6 04-OCT-17 2CB5 1 REMARK REVDAT 5 13-JUL-11 2CB5 1 VERSN REVDAT 4 24-FEB-09 2CB5 1 VERSN REVDAT 3 01-APR-03 2CB5 1 JRNL REVDAT 2 21-JUN-00 2CB5 3 ATOM REMARK MTRIX1 MTRIX2 REVDAT 2 2 3 MTRIX3 REVDAT 1 06-MAR-00 2CB5 0 JRNL AUTH P.A.O'FARRELL,F.GONZALEZ,W.ZHENG,S.A.JOHNSTON,L.JOSHUA-TOR JRNL TITL CRYSTAL STRUCTURE OF HUMAN BLEOMYCIN HYDROLASE, A JRNL TITL 2 SELF-COMPARTMENTALIZING CYSTEINE PROTEASE. JRNL REF STRUCTURE FOLD.DES. V. 7 619 1999 JRNL REFN ISSN 0969-2126 JRNL PMID 10404591 JRNL DOI 10.1016/S0969-2126(99)80083-5 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.4 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.9 REMARK 3 NUMBER OF REFLECTIONS : 77497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 3698 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 11782 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 592 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7348 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 564 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.09000 REMARK 3 B22 (A**2) : -4.09000 REMARK 3 B33 (A**2) : 8.18000 REMARK 3 B12 (A**2) : 0.42000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : 0.11 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.14 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.950 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 57.44 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 RESIDUES 383-385 LIE IN A LOOP REGION FOR WHICH THE DENSITY REMARK 3 IS DIFFICULT TO INTERPRET. THEY HAVE BEEN MODELED, BUT REMARK 3 OCCUPANCY HAS BEEN SET TO ZERO FOR NON-MAINCHAIN ATOMS. REMARK 3 OCCUPANCY HAS ALSO BEEN SET TO ZERO FOR SOME SIDE-CHAIN REMARK 3 ATOMS ON THE PROTEIN SURFACE. REMARK 4 REMARK 4 2CB5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-99. REMARK 100 THE DEPOSITION ID IS D_1000000565. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.115 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SOFTWARE AT SYNCHROTRON REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77497 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 8.20000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1GCB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 89.75600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.82065 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 54.71600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 89.75600 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 51.82065 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 54.71600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 89.75600 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 51.82065 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 54.71600 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 89.75600 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 51.82065 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 54.71600 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 89.75600 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 51.82065 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 54.71600 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 89.75600 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 51.82065 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 54.71600 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 103.64130 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 109.43200 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 103.64130 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 109.43200 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 103.64130 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 109.43200 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 103.64130 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 109.43200 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 103.64130 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 109.43200 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 103.64130 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 109.43200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 33360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 96280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -158.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 269.26800 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -155.46195 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 269.26800 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 155.46195 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 269.26800 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 -155.46195 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 269.26800 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 155.46195 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 359.02400 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 179.51200 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 310.92390 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 179.51200 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 -103.64130 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 54.71600 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 207.28260 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 54.71600 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 359.02400 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 207.28260 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 54.71600 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 3 O CB OG REMARK 480 GLU A 9 CD OE1 OE2 REMARK 480 ILE A 15 CD1 REMARK 480 GLN A 16 CG CD OE1 NE2 REMARK 480 ARG A 48 CZ NH1 NH2 REMARK 480 GLN A 54 CG CD OE1 NE2 REMARK 480 LEU A 90 CD1 CD2 REMARK 480 ARG A 191 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 238 CE NZ REMARK 480 LYS A 240 CE NZ REMARK 480 LYS A 244 CE NZ REMARK 480 ILE A 245 CB CG1 CG2 CD1 REMARK 480 GLU A 256 CD OE1 OE2 REMARK 480 LYS A 335 CD CE NZ REMARK 480 ASP A 383 O CB CG OD1 OD2 REMARK 480 ASP A 384 O CB CG OD1 OD2 REMARK 480 GLN A 385 O CB CG CD OE1 NE2 REMARK 480 HIS A 402 CB CG ND1 CD2 CE1 NE2 REMARK 480 LYS A 405 CD CE NZ REMARK 480 ARG A 426 CZ NH1 NH2 REMARK 480 LEU A 437 CG CD1 CD2 REMARK 480 SER B 2 O CB OG REMARK 480 SER B 3 O CB OG REMARK 480 GLN B 16 CG CD OE1 NE2 REMARK 480 LYS B 42 CE NZ REMARK 480 LYS B 62 CE NZ REMARK 480 LYS B 89 CG CD CE NZ REMARK 480 ILE B 92 CG1 CG2 CD1 REMARK 480 LYS B 163 CG CD CE NZ REMARK 480 ARG B 191 CG CD NE CZ NH1 NH2 REMARK 480 GLU B 229 OE1 OE2 REMARK 480 LYS B 240 CE NZ REMARK 480 GLN B 277 CG CD OE1 NE2 REMARK 480 ASP B 383 O CB CG OD1 OD2 REMARK 480 ASP B 384 O CB CG OD1 OD2 REMARK 480 GLN B 385 O CB CG CD OE1 NE2 REMARK 480 ASP B 386 O CB CG OD1 OD2 REMARK 480 LYS B 405 CB CG CD CE NZ REMARK 480 GLU B 438 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 455 O HOH B 471 0.01 REMARK 500 O HOH A 458 O HOH A 683 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 387 N - CA - C ANGL. DEV. = -15.7 DEGREES REMARK 500 MET A 410 CG - SD - CE ANGL. DEV. = -10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 68 -141.68 53.37 REMARK 500 PHE A 95 143.33 -171.87 REMARK 500 ASN A 139 67.29 -160.41 REMARK 500 PHE A 165 85.55 -158.51 REMARK 500 ALA A 173 75.45 -162.32 REMARK 500 HIS A 331 60.60 35.73 REMARK 500 ASP A 384 -34.31 133.35 REMARK 500 GLN A 385 -79.98 143.73 REMARK 500 ASP A 386 174.80 41.00 REMARK 500 SER B 3 -30.33 88.82 REMARK 500 LYS B 68 -142.25 56.64 REMARK 500 ASN B 139 65.35 -161.98 REMARK 500 PHE B 165 79.70 -160.20 REMARK 500 ALA B 173 77.38 -161.82 REMARK 500 HIS B 331 58.19 39.21 REMARK 500 ASP B 384 -85.08 -145.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CB5 RELATED DB: PDB DBREF 2CB5 A 2 454 UNP Q13867 BLMH_HUMAN 2 454 DBREF 2CB5 B 2 454 UNP Q13867 BLMH_HUMAN 2 454 SEQADV 2CB5 SER A 73 UNP Q13867 CYS 73 ENGINEERED MUTATION SEQADV 2CB5 HIS A 280 UNP Q13867 TYR 280 SEE REMARK 999 SEQADV 2CB5 SER B 73 UNP Q13867 CYS 73 ENGINEERED MUTATION SEQADV 2CB5 HIS B 280 UNP Q13867 TYR 280 SEE REMARK 999 SEQRES 1 A 453 SER SER SER GLY LEU ASN SER GLU LYS VAL ALA ALA LEU SEQRES 2 A 453 ILE GLN LYS LEU ASN SER ASP PRO GLN PHE VAL LEU ALA SEQRES 3 A 453 GLN ASN VAL GLY THR THR HIS ASP LEU LEU ASP ILE CYS SEQRES 4 A 453 LEU LYS ARG ALA THR VAL GLN ARG ALA GLN HIS VAL PHE SEQRES 5 A 453 GLN HIS ALA VAL PRO GLN GLU GLY LYS PRO ILE THR ASN SEQRES 6 A 453 GLN LYS SER SER GLY ARG SER TRP ILE PHE SER CYS LEU SEQRES 7 A 453 ASN VAL MET ARG LEU PRO PHE MET LYS LYS LEU ASN ILE SEQRES 8 A 453 GLU GLU PHE GLU PHE SER GLN SER TYR LEU PHE PHE TRP SEQRES 9 A 453 ASP LYS VAL GLU ARG CYS TYR PHE PHE LEU SER ALA PHE SEQRES 10 A 453 VAL ASP THR ALA GLN ARG LYS GLU PRO GLU ASP GLY ARG SEQRES 11 A 453 LEU VAL GLN PHE LEU LEU MET ASN PRO ALA ASN ASP GLY SEQRES 12 A 453 GLY GLN TRP ASP MET LEU VAL ASN ILE VAL GLU LYS TYR SEQRES 13 A 453 GLY VAL ILE PRO LYS LYS CYS PHE PRO GLU SER TYR THR SEQRES 14 A 453 THR GLU ALA THR ARG ARG MET ASN ASP ILE LEU ASN HIS SEQRES 15 A 453 LYS MET ARG GLU PHE CYS ILE ARG LEU ARG ASN LEU VAL SEQRES 16 A 453 HIS SER GLY ALA THR LYS GLY GLU ILE SER ALA THR GLN SEQRES 17 A 453 ASP VAL MET MET GLU GLU ILE PHE ARG VAL VAL CYS ILE SEQRES 18 A 453 CYS LEU GLY ASN PRO PRO GLU THR PHE THR TRP GLU TYR SEQRES 19 A 453 ARG ASP LYS ASP LYS ASN TYR GLU LYS ILE GLY PRO ILE SEQRES 20 A 453 THR PRO LEU GLU PHE TYR ARG GLU HIS VAL LYS PRO LEU SEQRES 21 A 453 PHE ASN MET GLU ASP LYS ILE CYS LEU VAL ASN ASP PRO SEQRES 22 A 453 ARG PRO GLN HIS LYS HIS ASN LYS LEU TYR THR VAL GLU SEQRES 23 A 453 TYR LEU SER ASN MET VAL GLY GLY ARG LYS THR LEU TYR SEQRES 24 A 453 ASN ASN GLN PRO ILE ASP PHE LEU LYS LYS MET VAL ALA SEQRES 25 A 453 ALA SER ILE LYS ASP GLY GLU ALA VAL TRP PHE GLY CYS SEQRES 26 A 453 ASP VAL GLY LYS HIS PHE ASN SER LYS LEU GLY LEU SER SEQRES 27 A 453 ASP MET ASN LEU TYR ASP HIS GLU LEU VAL PHE GLY VAL SEQRES 28 A 453 SER LEU LYS ASN MET ASN LYS ALA GLU ARG LEU THR PHE SEQRES 29 A 453 GLY GLU SER LEU MET THR HIS ALA MET THR PHE THR ALA SEQRES 30 A 453 VAL SER GLU LYS ASP ASP GLN ASP GLY ALA PHE THR LYS SEQRES 31 A 453 TRP ARG VAL GLU ASN SER TRP GLY GLU ASP HIS GLY HIS SEQRES 32 A 453 LYS GLY TYR LEU CYS MET THR ASP GLU TRP PHE SER GLU SEQRES 33 A 453 TYR VAL TYR GLU VAL VAL VAL ASP ARG LYS HIS VAL PRO SEQRES 34 A 453 GLU GLU VAL LEU ALA VAL LEU GLU GLN GLU PRO ILE ILE SEQRES 35 A 453 LEU PRO ALA TRP ASP PRO MET GLY ALA LEU ALA SEQRES 1 B 453 SER SER SER GLY LEU ASN SER GLU LYS VAL ALA ALA LEU SEQRES 2 B 453 ILE GLN LYS LEU ASN SER ASP PRO GLN PHE VAL LEU ALA SEQRES 3 B 453 GLN ASN VAL GLY THR THR HIS ASP LEU LEU ASP ILE CYS SEQRES 4 B 453 LEU LYS ARG ALA THR VAL GLN ARG ALA GLN HIS VAL PHE SEQRES 5 B 453 GLN HIS ALA VAL PRO GLN GLU GLY LYS PRO ILE THR ASN SEQRES 6 B 453 GLN LYS SER SER GLY ARG SER TRP ILE PHE SER CYS LEU SEQRES 7 B 453 ASN VAL MET ARG LEU PRO PHE MET LYS LYS LEU ASN ILE SEQRES 8 B 453 GLU GLU PHE GLU PHE SER GLN SER TYR LEU PHE PHE TRP SEQRES 9 B 453 ASP LYS VAL GLU ARG CYS TYR PHE PHE LEU SER ALA PHE SEQRES 10 B 453 VAL ASP THR ALA GLN ARG LYS GLU PRO GLU ASP GLY ARG SEQRES 11 B 453 LEU VAL GLN PHE LEU LEU MET ASN PRO ALA ASN ASP GLY SEQRES 12 B 453 GLY GLN TRP ASP MET LEU VAL ASN ILE VAL GLU LYS TYR SEQRES 13 B 453 GLY VAL ILE PRO LYS LYS CYS PHE PRO GLU SER TYR THR SEQRES 14 B 453 THR GLU ALA THR ARG ARG MET ASN ASP ILE LEU ASN HIS SEQRES 15 B 453 LYS MET ARG GLU PHE CYS ILE ARG LEU ARG ASN LEU VAL SEQRES 16 B 453 HIS SER GLY ALA THR LYS GLY GLU ILE SER ALA THR GLN SEQRES 17 B 453 ASP VAL MET MET GLU GLU ILE PHE ARG VAL VAL CYS ILE SEQRES 18 B 453 CYS LEU GLY ASN PRO PRO GLU THR PHE THR TRP GLU TYR SEQRES 19 B 453 ARG ASP LYS ASP LYS ASN TYR GLU LYS ILE GLY PRO ILE SEQRES 20 B 453 THR PRO LEU GLU PHE TYR ARG GLU HIS VAL LYS PRO LEU SEQRES 21 B 453 PHE ASN MET GLU ASP LYS ILE CYS LEU VAL ASN ASP PRO SEQRES 22 B 453 ARG PRO GLN HIS LYS HIS ASN LYS LEU TYR THR VAL GLU SEQRES 23 B 453 TYR LEU SER ASN MET VAL GLY GLY ARG LYS THR LEU TYR SEQRES 24 B 453 ASN ASN GLN PRO ILE ASP PHE LEU LYS LYS MET VAL ALA SEQRES 25 B 453 ALA SER ILE LYS ASP GLY GLU ALA VAL TRP PHE GLY CYS SEQRES 26 B 453 ASP VAL GLY LYS HIS PHE ASN SER LYS LEU GLY LEU SER SEQRES 27 B 453 ASP MET ASN LEU TYR ASP HIS GLU LEU VAL PHE GLY VAL SEQRES 28 B 453 SER LEU LYS ASN MET ASN LYS ALA GLU ARG LEU THR PHE SEQRES 29 B 453 GLY GLU SER LEU MET THR HIS ALA MET THR PHE THR ALA SEQRES 30 B 453 VAL SER GLU LYS ASP ASP GLN ASP GLY ALA PHE THR LYS SEQRES 31 B 453 TRP ARG VAL GLU ASN SER TRP GLY GLU ASP HIS GLY HIS SEQRES 32 B 453 LYS GLY TYR LEU CYS MET THR ASP GLU TRP PHE SER GLU SEQRES 33 B 453 TYR VAL TYR GLU VAL VAL VAL ASP ARG LYS HIS VAL PRO SEQRES 34 B 453 GLU GLU VAL LEU ALA VAL LEU GLU GLN GLU PRO ILE ILE SEQRES 35 B 453 LEU PRO ALA TRP ASP PRO MET GLY ALA LEU ALA FORMUL 3 HOH *564(H2 O) HELIX 1 1 ASN A 7 SER A 20 1 14 HELIX 2 2 ASP A 21 THR A 32 1 12 HELIX 3 3 ASP A 35 LEU A 41 1 7 HELIX 4 4 LYS A 42 ALA A 49 1 8 HELIX 5 5 ARG A 72 LEU A 90 1 19 HELIX 6 6 SER A 98 ARG A 124 1 27 HELIX 7 7 GLY A 130 ASN A 139 1 10 HELIX 8 8 GLN A 146 GLY A 158 1 13 HELIX 9 9 LYS A 162 PHE A 165 5 4 HELIX 10 10 TYR A 169 GLU A 172 5 4 HELIX 11 11 THR A 174 SER A 198 1 25 HELIX 12 12 THR A 201 GLY A 225 1 25 HELIX 13 13 THR A 249 VAL A 258 1 10 HELIX 14 14 ASN A 263 GLU A 265 5 3 HELIX 15 15 PRO A 304 ASP A 318 1 15 HELIX 16 16 ASP A 345 GLY A 351 1 7 HELIX 17 17 ASN A 358 PHE A 365 1 8 HELIX 18 18 ASP A 412 TYR A 418 1 7 HELIX 19 19 LYS A 427 VAL A 429 5 3 HELIX 20 20 PRO A 430 ALA A 435 1 6 HELIX 21 21 VAL A 436 GLN A 439 5 4 HELIX 22 22 ASN B 7 SER B 20 1 14 HELIX 23 23 ASP B 21 THR B 32 1 12 HELIX 24 24 ASP B 35 LEU B 41 1 7 HELIX 25 25 LYS B 42 ALA B 49 1 8 HELIX 26 26 ARG B 72 ASN B 91 1 20 HELIX 27 27 SER B 98 ARG B 124 1 27 HELIX 28 28 GLY B 130 MET B 138 1 9 HELIX 29 29 GLN B 146 GLY B 158 1 13 HELIX 30 30 LYS B 162 PHE B 165 5 4 HELIX 31 31 TYR B 169 GLU B 172 5 4 HELIX 32 32 THR B 174 SER B 198 1 25 HELIX 33 33 THR B 201 GLY B 225 1 25 HELIX 34 34 THR B 249 VAL B 258 1 10 HELIX 35 35 ASN B 263 GLU B 265 5 3 HELIX 36 36 PRO B 304 ASP B 318 1 15 HELIX 37 37 ASP B 345 GLY B 351 1 7 HELIX 38 38 ASN B 358 PHE B 365 1 8 HELIX 39 39 ASP B 412 TYR B 418 1 7 HELIX 40 40 LYS B 427 VAL B 429 5 3 HELIX 41 41 PRO B 430 VAL B 436 1 7 HELIX 42 42 LEU B 437 GLN B 439 5 3 SHEET 1 A 6 PHE A 332 ASN A 333 0 SHEET 2 A 6 LEU A 338 SER A 339 -1 O LEU A 338 N ASN A 333 SHEET 3 A 6 TYR A 407 THR A 411 1 O CYS A 409 N SER A 339 SHEET 4 A 6 PHE A 389 GLU A 395 -1 O TRP A 392 N MET A 410 SHEET 5 A 6 HIS A 372 GLU A 381 -1 O THR A 375 N GLU A 395 SHEET 6 A 6 HIS A 55 ALA A 56 -1 N HIS A 55 O VAL A 379 SHEET 1 B11 PHE A 332 ASN A 333 0 SHEET 2 B11 LEU A 338 SER A 339 -1 O LEU A 338 N ASN A 333 SHEET 3 B11 TYR A 407 THR A 411 1 O CYS A 409 N SER A 339 SHEET 4 B11 PHE A 389 GLU A 395 -1 O TRP A 392 N MET A 410 SHEET 5 B11 HIS A 372 GLU A 381 -1 O THR A 375 N GLU A 395 SHEET 6 B11 VAL A 322 CYS A 326 -1 O VAL A 322 N PHE A 376 SHEET 7 B11 VAL A 419 ASP A 425 -1 N TYR A 420 O GLY A 325 SHEET 8 B11 LYS A 267 VAL A 271 -1 N ILE A 268 O VAL A 424 SHEET 9 B11 TYR A 300 ASN A 302 1 O ASN A 301 N VAL A 271 SHEET 10 B11 LYS A 282 VAL A 286 -1 O LYS A 282 N ASN A 302 SHEET 11 B11 ILE A 442 LEU A 444 1 N ILE A 442 O LEU A 283 SHEET 1 C 2 PHE A 231 ARG A 236 0 SHEET 2 C 2 TYR A 242 ILE A 248 -1 N GLU A 243 O TYR A 235 SHEET 1 D 6 PHE B 332 ASN B 333 0 SHEET 2 D 6 LEU B 338 SER B 339 -1 O LEU B 338 N ASN B 333 SHEET 3 D 6 TYR B 407 THR B 411 1 O CYS B 409 N SER B 339 SHEET 4 D 6 PHE B 389 GLU B 395 -1 N TRP B 392 O MET B 410 SHEET 5 D 6 HIS B 372 GLU B 381 -1 O THR B 375 N GLU B 395 SHEET 6 D 6 HIS B 55 ALA B 56 -1 O HIS B 55 N VAL B 379 SHEET 1 E11 PHE B 332 ASN B 333 0 SHEET 2 E11 LEU B 338 SER B 339 -1 O LEU B 338 N ASN B 333 SHEET 3 E11 TYR B 407 THR B 411 1 O CYS B 409 N SER B 339 SHEET 4 E11 PHE B 389 GLU B 395 -1 N TRP B 392 O MET B 410 SHEET 5 E11 HIS B 372 GLU B 381 -1 O THR B 375 N GLU B 395 SHEET 6 E11 VAL B 322 CYS B 326 -1 O VAL B 322 N PHE B 376 SHEET 7 E11 VAL B 419 ASP B 425 -1 N TYR B 420 O GLY B 325 SHEET 8 E11 LYS B 267 VAL B 271 -1 N ILE B 268 O VAL B 424 SHEET 9 E11 TYR B 300 ASN B 302 1 O ASN B 301 N VAL B 271 SHEET 10 E11 LYS B 282 VAL B 286 -1 O LYS B 282 N ASN B 302 SHEET 11 E11 ILE B 442 LEU B 444 1 N ILE B 442 O LEU B 283 SHEET 1 F 2 PHE B 231 ARG B 236 0 SHEET 2 F 2 TYR B 242 ILE B 248 -1 N GLU B 243 O TYR B 235 CISPEP 1 LYS A 62 PRO A 63 0 -0.19 CISPEP 2 GLY A 246 PRO A 247 0 0.18 CISPEP 3 LYS B 62 PRO B 63 0 -0.36 CISPEP 4 GLY B 246 PRO B 247 0 0.32 CRYST1 179.512 179.512 164.148 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005571 0.003216 0.000000 0.00000 SCALE2 0.000000 0.006432 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006092 0.00000 MTRIX1 1 1.000000 -0.000019 -0.000017 -0.00192 1 MTRIX2 1 -0.000019 -1.000000 -0.000003 0.00322 1 MTRIX3 1 -0.000017 0.000003 -1.000000 0.00266 1