HEADER HYDROLASE 03-JAN-06 2CBG TITLE CRYSTAL STRUCTURE OF THE PMSF-INHIBITED THIOESTERASE DOMAIN OF THE TITLE 2 FENGYCIN BIOSYNTHESIS CLUSTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: FENGYCIN SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THIOESTERASE DOMAIN, RESIDUES 1043-1274; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: RECOMBINANT FRAGMENT OF THE NRPS SYNTHETASE FENB COMPND 7 (Q1043-H1274), INHIBITED FORM GENERATED BY CRYSTALS SOAKED IN THE COMPND 8 PRESENCE OF PMSF SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: F29-3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PREP4; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PQE-60 KEYWDS FENGYCIN THIOESTERASE, NON-RIBOSOMAL PEPTIDE SYNTHESIS, ALPHA/BETA- KEYWDS 2 HYDROLASE, PHOSPHOPANTETHEINE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SAMEL,M.A.MARAHIEL,L.-O.ESSEN REVDAT 5 06-NOV-24 2CBG 1 REMARK REVDAT 4 13-DEC-23 2CBG 1 LINK REVDAT 3 05-JUL-17 2CBG 1 REMARK REVDAT 2 24-FEB-09 2CBG 1 VERSN REVDAT 1 06-MAR-07 2CBG 0 JRNL AUTH S.SAMEL,B.WAGNER,M.A.MARAHIEL,L.-O.ESSEN JRNL TITL THE THIOESTERASE DOMAIN OF THE FENGYCIN BIOSYNTHESIS JRNL TITL 2 CLUSTER: A STRUCTURAL BASE FOR THE MACROCYCLIZATION OF A JRNL TITL 3 NON-RIBOSOMAL LIPOPEPTIDE JRNL REF J.MOL.BIOL. V. 359 876 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16697411 JRNL DOI 10.1016/J.JMB.2006.03.062 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 8690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 489 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 424 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 20 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1665 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.53000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : -0.80000 REMARK 3 B12 (A**2) : 0.27000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.430 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.278 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.183 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.380 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.876 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1708 ; 0.041 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2302 ; 2.589 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 208 ; 8.721 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 244 ; 0.167 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1312 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 873 ; 0.238 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 113 ; 0.198 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.231 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.231 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1037 ; 1.608 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1655 ; 2.982 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 671 ; 4.495 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 647 ; 6.856 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THE RESIDUES T123-A131 WERE DISORDERED REMARK 4 REMARK 4 2CBG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1290026626. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9190 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 24.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : 3.760 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 54.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1JMK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NH4 ACETATE, 0.1 M NA CITRATE REMARK 280 (PH 5.6), 22.5 % PEG 8000, 10 MG/ML PROTEIN, PH 5.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.11100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.22200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.16650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 80.27750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.05550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 ARG A 2 REMARK 465 SER A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 5 REMARK 465 THR A 123 REMARK 465 GLU A 124 REMARK 465 ASN A 125 REMARK 465 ASP A 126 REMARK 465 ASP A 127 REMARK 465 SER A 128 REMARK 465 ALA A 129 REMARK 465 ALA A 130 REMARK 465 TYR A 131 REMARK 465 ASN A 225 REMARK 465 SER A 226 REMARK 465 ASP A 227 REMARK 465 GLN A 228 REMARK 465 LYS A 229 REMARK 465 VAL A 230 REMARK 465 LEU A 231 REMARK 465 PRO A 232 REMARK 465 ASN A 233 REMARK 465 LYS A 234 REMARK 465 HIS A 235 REMARK 465 GLY A 236 REMARK 465 SER A 237 REMARK 465 HIS A 238 REMARK 465 HIS A 239 REMARK 465 HIS A 240 REMARK 465 HIS A 241 REMARK 465 HIS A 242 REMARK 465 HIS A 243 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 36 O HOH A 2014 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 27 CG PHE A 27 CD2 0.093 REMARK 500 PHE A 27 CZ PHE A 27 CE2 0.117 REMARK 500 PHE A 53 CZ PHE A 53 CE2 0.118 REMARK 500 PHE A 55 CG PHE A 55 CD1 0.094 REMARK 500 PHE A 55 CE1 PHE A 55 CZ 0.114 REMARK 500 GLU A 63 CG GLU A 63 CD 0.094 REMARK 500 GLU A 63 CD GLU A 63 OE1 0.103 REMARK 500 TYR A 65 CZ TYR A 65 CE2 0.090 REMARK 500 PHE A 91 CG PHE A 91 CD2 0.094 REMARK 500 PHE A 91 CE1 PHE A 91 CZ 0.128 REMARK 500 GLN A 99 CG GLN A 99 CD 0.153 REMARK 500 MET A 141 SD MET A 141 CE 0.354 REMARK 500 GLN A 142 CB GLN A 142 CG -0.164 REMARK 500 GLU A 149 CD GLU A 149 OE1 0.077 REMARK 500 GLU A 149 CD GLU A 149 OE2 0.075 REMARK 500 MET A 179 SD MET A 179 CE 0.389 REMARK 500 LYS A 183 CE LYS A 183 NZ 0.361 REMARK 500 LYS A 212 CE LYS A 212 NZ 0.209 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 145 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 159 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 159 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 LYS A 183 CD - CE - NZ ANGL. DEV. = 21.2 DEGREES REMARK 500 ASP A 203 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 7 -70.27 -54.85 REMARK 500 GLN A 19 150.93 -48.63 REMARK 500 SER A 84 -131.80 61.14 REMARK 500 THR A 173 76.86 -119.81 REMARK 500 GLU A 174 -11.16 156.03 REMARK 500 THR A 175 88.83 -1.17 REMARK 500 TRP A 184 1.40 82.85 REMARK 500 GLU A 190 -100.45 -142.75 REMARK 500 HIS A 201 -82.87 -39.36 REMARK 500 LYS A 202 -47.02 -28.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PMS A1225 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CB9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE THIOESTERASE DOMAIN OF THE FENGYCIN REMARK 900 BIOSYNTHESIS CLUSTER DBREF 2CBG A 0 3 PDB 2CBG 2CBG 0 3 DBREF 2CBG A 4 235 UNP Q45563 Q45563_BACSU 1043 1274 DBREF 2CBG A 236 243 PDB 2CBG 2CBG 236 243 SEQRES 1 A 244 MET ALA ARG SER GLN LEU SER ALA ALA GLY GLU GLN HIS SEQRES 2 A 244 VAL ILE GLN LEU ASN GLN GLN GLY GLY LYS ASN LEU PHE SEQRES 3 A 244 CYS PHE PRO PRO ILE SER GLY PHE GLY ILE TYR PHE LYS SEQRES 4 A 244 ASP LEU ALA LEU GLN LEU ASN HIS LYS ALA ALA VAL TYR SEQRES 5 A 244 GLY PHE HIS PHE ILE GLU GLU ASP SER ARG ILE GLU GLN SEQRES 6 A 244 TYR VAL SER ARG ILE THR GLU ILE GLN PRO GLU GLY PRO SEQRES 7 A 244 TYR VAL LEU LEU GLY TYR SER ALA GLY GLY ASN LEU ALA SEQRES 8 A 244 PHE GLU VAL VAL GLN ALA MET GLU GLN LYS GLY LEU GLU SEQRES 9 A 244 VAL SER ASP PHE ILE ILE VAL ASP ALA TYR LYS LYS ASP SEQRES 10 A 244 GLN SER ILE THR ALA ASP THR GLU ASN ASP ASP SER ALA SEQRES 11 A 244 ALA TYR LEU PRO GLU ALA VAL ARG GLU THR VAL MET GLN SEQRES 12 A 244 LYS LYS ARG CYS TYR GLN GLU TYR TRP ALA GLN LEU ILE SEQRES 13 A 244 ASN GLU GLY ARG ILE LYS SER ASN ILE HIS PHE ILE GLU SEQRES 14 A 244 ALA GLY ILE GLN THR GLU THR SER GLY ALA MET VAL LEU SEQRES 15 A 244 GLN LYS TRP GLN ASP ALA ALA GLU GLU GLY TYR ALA GLU SEQRES 16 A 244 TYR THR GLY TYR GLY ALA HIS LYS ASP MET LEU GLU GLY SEQRES 17 A 244 GLU PHE ALA GLU LYS ASN ALA ASN ILE ILE LEU ASN ILE SEQRES 18 A 244 LEU ASP LYS ILE ASN SER ASP GLN LYS VAL LEU PRO ASN SEQRES 19 A 244 LYS HIS GLY SER HIS HIS HIS HIS HIS HIS HET PMS A1225 10 HETNAM PMS PHENYLMETHANESULFONIC ACID FORMUL 2 PMS C7 H8 O3 S FORMUL 3 HOH *75(H2 O) HELIX 1 1 PHE A 33 TYR A 36 5 4 HELIX 2 2 PHE A 37 LEU A 44 1 8 HELIX 3 3 SER A 60 GLN A 73 1 14 HELIX 4 4 SER A 84 LYS A 100 1 17 HELIX 5 5 PRO A 133 MET A 141 1 9 HELIX 6 6 MET A 141 LEU A 154 1 14 HELIX 7 7 MET A 179 LYS A 183 5 5 HELIX 8 8 TRP A 184 ALA A 187 5 4 HELIX 9 9 ALA A 200 MET A 204 5 5 HELIX 10 10 GLU A 208 ILE A 224 1 17 SHEET 1 AA 7 VAL A 13 GLN A 15 0 SHEET 2 AA 7 ALA A 49 PHE A 53 -1 O GLY A 52 N ILE A 14 SHEET 3 AA 7 ASN A 23 PHE A 27 1 O LEU A 24 N TYR A 51 SHEET 4 AA 7 TYR A 78 TYR A 83 1 O VAL A 79 N PHE A 25 SHEET 5 AA 7 VAL A 104 VAL A 110 1 N SER A 105 O TYR A 78 SHEET 6 AA 7 ASN A 163 GLU A 168 1 O ASN A 163 N PHE A 107 SHEET 7 AA 7 TYR A 192 THR A 196 1 O ALA A 193 N PHE A 166 LINK OG SER A 84 S PMS A1225 1555 1555 1.84 CISPEP 1 GLY A 76 PRO A 77 0 -4.59 SITE 1 AC1 5 PRO A 29 ILE A 30 SER A 84 ALA A 85 SITE 2 AC1 5 TRP A 151 CRYST1 72.354 72.354 96.333 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013821 0.007980 0.000000 0.00000 SCALE2 0.000000 0.015959 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010381 0.00000