HEADER TRANSFERASE 11-JAN-06 2CC2 TITLE X-RAY CRYSTAL STRUCTURE OF 5'-FLUORODEOXYADENOSINE SYNTHASE FROM TITLE 2 STREPTOMYCES CATTLEYA COMPLEXED WITH 5'DEOXYADENOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-FLUORO-5'-DEOXYADENOSINE SYNTHASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: FLUORINASE; COMPND 5 EC: 2.5.1.63; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES CATTLEYA; SOURCE 3 ORGANISM_TAXID: 29303; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: PEHISTEV; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PEHISTEV-FLA KEYWDS FLUORINASE, 5'DEOXYADENOSINE, TRANSFERASE, FLA EXPDTA X-RAY DIFFRACTION AUTHOR A.R.MCEWAN,H.DENG,R.P.MCGLINCHEY,D.R.ROBINSON,D.O'HAGAN,J.SPENCER, AUTHOR 2 J.H.NAISMITH REVDAT 5 13-DEC-23 2CC2 1 REMARK REVDAT 4 28-MAR-18 2CC2 1 SOURCE AUTHOR JRNL REVDAT 3 24-FEB-09 2CC2 1 VERSN REVDAT 2 03-APR-07 2CC2 1 REMARK REVDAT 1 20-MAR-07 2CC2 0 JRNL AUTH S.L.COBB,H.DENG,A.R.MCEWAN,J.H.NAISMITH,D.O'HAGAN, JRNL AUTH 2 D.A.ROBINSON JRNL TITL SUBSTRATE SPECIFICITY IN ENZYMATIC FLUORINATION. THE JRNL TITL 2 FLUORINASE FROM STREPTOMYCES CATTLEYA ACCEPTS JRNL TITL 3 2'-DEOXYADENOSINE SUBSTRATES. JRNL REF ORG. BIOMOL. CHEM. V. 4 1458 2006 JRNL REFN ISSN 1477-0520 JRNL PMID 16604208 JRNL DOI 10.1039/B600574H REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 74.0 REMARK 3 NUMBER OF REFLECTIONS : 43477 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2275 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2981 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 152 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6621 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 336 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.57000 REMARK 3 B22 (A**2) : -2.29000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.225 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.360 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6847 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9352 ; 1.120 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 862 ; 6.743 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 295 ;33.515 ;23.220 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1008 ;14.070 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;17.962 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1047 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5301 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2953 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4573 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 357 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 64 ; 0.212 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.211 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4453 ; 0.837 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6952 ; 1.266 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2789 ; 0.848 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2400 ; 1.175 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 20 A 290 6 REMARK 3 1 B 20 B 290 6 REMARK 3 1 C 20 C 290 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 290 REMARK 3 RESIDUE RANGE : B 12 B 290 REMARK 3 RESIDUE RANGE : C 12 C 290 REMARK 3 ORIGIN FOR THE GROUP (A): 4.3005 36.4511 -21.2139 REMARK 3 T TENSOR REMARK 3 T11: -0.0934 T22: -0.0477 REMARK 3 T33: -0.1096 T12: -0.0030 REMARK 3 T13: 0.0021 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.5790 L22: 0.5032 REMARK 3 L33: 0.7160 L12: 0.0575 REMARK 3 L13: 0.0006 L23: -0.1553 REMARK 3 S TENSOR REMARK 3 S11: -0.0173 S12: 0.0069 S13: 0.0201 REMARK 3 S21: -0.0099 S22: -0.0266 S23: 0.0106 REMARK 3 S31: 0.0370 S32: 0.0034 S33: 0.0439 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. DISORDERED REGIONS WERE MODELED STEREOCHEMICALLY REMARK 4 REMARK 4 2CC2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1290027159. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND 111-GE-20 REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45862 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 44.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 74.1 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2C2W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 1K, 100MM PHOSPHATE CITRATE REMARK 280 PH4.4, 200MM LI2SO4, 20MM NACL, PH 4.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.25250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.25250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.99500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.83800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.99500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.83800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.25250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.99500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.83800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 92.25250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.99500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.83800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -92.25250 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ASN A 4 REMARK 465 SER A 5 REMARK 465 THR A 6 REMARK 465 ARG A 7 REMARK 465 ARG A 100 REMARK 465 ARG A 299 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 ASN B 4 REMARK 465 SER B 5 REMARK 465 THR B 6 REMARK 465 ARG B 7 REMARK 465 ARG B 299 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 ALA C 3 REMARK 465 ASN C 4 REMARK 465 SER C 5 REMARK 465 THR C 6 REMARK 465 ARG C 7 REMARK 465 GLY C 97 REMARK 465 GLY C 98 REMARK 465 ALA C 99 REMARK 465 ARG C 100 REMARK 465 GLY C 101 REMARK 465 ARG C 299 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 43 -70.61 -79.59 REMARK 500 ALA A 95 134.07 69.53 REMARK 500 VAL A 162 -66.85 -129.71 REMARK 500 ASP A 241 16.52 57.90 REMARK 500 VAL B 43 -73.91 -79.25 REMARK 500 LYS B 92 -77.49 -95.30 REMARK 500 ALA B 95 121.33 67.35 REMARK 500 LYS B 96 -173.48 -62.47 REMARK 500 VAL B 162 -58.72 -133.50 REMARK 500 VAL C 43 -74.53 -84.78 REMARK 500 LYS C 92 -83.87 -92.62 REMARK 500 ALA C 95 121.27 74.88 REMARK 500 PHE C 156 53.21 -140.91 REMARK 500 VAL C 162 -64.69 -130.04 REMARK 500 ALA C 208 147.31 -170.68 REMARK 500 TYR C 232 0.68 -56.71 REMARK 500 VAL C 243 -56.10 -130.62 REMARK 500 SER C 269 13.07 -68.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "CB" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5AD A1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5AD B1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5AD B1300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RQP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE AND MECHANISM OF A BACTERIAL FLUORINATING ENZYME REMARK 900 RELATED ID: 1RQR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE AND MECHANISM OF A BACTERIAL FLUORINATINGENZYME, REMARK 900 PRODUCT COMPLEX REMARK 900 RELATED ID: 2C2W RELATED DB: PDB REMARK 900 THE FLUORINASE FROM STREPTOMYCES CATTLEYA IS ALSO A CHLORINASE. REMARK 900 STRUCTURE OF 5'-CHLORO- 5'-DEOXYADENOSINE CRSTALLISED IN THE REMARK 900 FLUORINASE. REMARK 900 RELATED ID: 2C4T RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF 5'- FLUORODEOXYADENOSINE SYNTHASE FROM REMARK 900 STREPTOMYCES CATTLEYA COMPLEXED WITH AN INHIBITOR, AN ANALOGUE OF S- REMARK 900 ADENOSYL METHIONINE REMARK 900 RELATED ID: 2C4U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE APO FORM OF THE 5'-FLUORO-5'- REMARK 900 DEOXYADENOSINE SYNTHASE ENZYME FROM STREPTOMYCES CATTLEYA REMARK 900 RELATED ID: 2C5B RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTUE OF 5'- FLUORODEOXYADENOSINE SYNTHASE FROM REMARK 900 STREPTOMYCES CATTLEYA COMPLEXED WITH 2'DEOXY-5'DEOXY- REMARK 900 FLUOROADENOSINE. REMARK 900 RELATED ID: 2C5H RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF 5- FLUORODEOXYADENOSINE SYNTHASE FROM REMARK 900 STREPTOMYCES CATTLEYA COMPLEXED WITH 5-DEOXY-ADENOSINE REMARK 900 RELATED ID: 2CBX RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF 5'- FLUORODEOXYADENOSINE SYNTHASE FROM REMARK 900 STREPTOMYCES CATTLEYA COMPLEXED WITH BETA-D-ERYTHROFURANOSYL- REMARK 900 ADENOSINE DBREF 2CC2 A 1 299 UNP Q70GK9 Q70GK9_STRCT 1 299 DBREF 2CC2 B 1 299 UNP Q70GK9 Q70GK9_STRCT 1 299 DBREF 2CC2 C 1 299 UNP Q70GK9 Q70GK9_STRCT 1 299 SEQRES 1 A 299 MET ALA ALA ASN SER THR ARG ARG PRO ILE ILE ALA PHE SEQRES 2 A 299 MET SER ASP LEU GLY THR THR ASP ASP SER VAL ALA GLN SEQRES 3 A 299 CYS LYS GLY LEU MET TYR SER ILE CYS PRO ASP VAL THR SEQRES 4 A 299 VAL VAL ASP VAL CYS HIS SER MET THR PRO TRP ASP VAL SEQRES 5 A 299 GLU GLU GLY ALA ARG TYR ILE VAL ASP LEU PRO ARG PHE SEQRES 6 A 299 PHE PRO GLU GLY THR VAL PHE ALA THR THR THR TYR PRO SEQRES 7 A 299 ALA THR GLY THR THR THR ARG SER VAL ALA VAL ARG ILE SEQRES 8 A 299 LYS GLN ALA ALA LYS GLY GLY ALA ARG GLY GLN TRP ALA SEQRES 9 A 299 GLY SER GLY ALA GLY PHE GLU ARG ALA GLU GLY SER TYR SEQRES 10 A 299 ILE TYR ILE ALA PRO ASN ASN GLY LEU LEU THR THR VAL SEQRES 11 A 299 LEU GLU GLU HIS GLY TYR LEU GLU ALA TYR GLU VAL THR SEQRES 12 A 299 SER PRO LYS VAL ILE PRO GLU GLN PRO GLU PRO THR PHE SEQRES 13 A 299 TYR SER ARG GLU MET VAL ALA ILE PRO SER ALA HIS LEU SEQRES 14 A 299 ALA ALA GLY PHE PRO LEU SER GLU VAL GLY ARG PRO LEU SEQRES 15 A 299 GLU ASP HIS GLU ILE VAL ARG PHE ASN ARG PRO ALA VAL SEQRES 16 A 299 GLU GLN ASP GLY GLU ALA LEU VAL GLY VAL VAL SER ALA SEQRES 17 A 299 ILE ASP HIS PRO PHE GLY ASN VAL TRP THR ASN ILE HIS SEQRES 18 A 299 ARG THR ASP LEU GLU LYS ALA GLY ILE GLY TYR GLY ALA SEQRES 19 A 299 ARG LEU ARG LEU THR LEU ASP GLY VAL LEU PRO PHE GLU SEQRES 20 A 299 ALA PRO LEU THR PRO THR PHE ALA ASP ALA GLY GLU ILE SEQRES 21 A 299 GLY ASN ILE ALA ILE TYR LEU ASN SER ARG GLY TYR LEU SEQRES 22 A 299 SER ILE ALA ARG ASN ALA ALA SER LEU ALA TYR PRO TYR SEQRES 23 A 299 HIS LEU LYS GLU GLY MET SER ALA ARG VAL GLU ALA ARG SEQRES 1 B 299 MET ALA ALA ASN SER THR ARG ARG PRO ILE ILE ALA PHE SEQRES 2 B 299 MET SER ASP LEU GLY THR THR ASP ASP SER VAL ALA GLN SEQRES 3 B 299 CYS LYS GLY LEU MET TYR SER ILE CYS PRO ASP VAL THR SEQRES 4 B 299 VAL VAL ASP VAL CYS HIS SER MET THR PRO TRP ASP VAL SEQRES 5 B 299 GLU GLU GLY ALA ARG TYR ILE VAL ASP LEU PRO ARG PHE SEQRES 6 B 299 PHE PRO GLU GLY THR VAL PHE ALA THR THR THR TYR PRO SEQRES 7 B 299 ALA THR GLY THR THR THR ARG SER VAL ALA VAL ARG ILE SEQRES 8 B 299 LYS GLN ALA ALA LYS GLY GLY ALA ARG GLY GLN TRP ALA SEQRES 9 B 299 GLY SER GLY ALA GLY PHE GLU ARG ALA GLU GLY SER TYR SEQRES 10 B 299 ILE TYR ILE ALA PRO ASN ASN GLY LEU LEU THR THR VAL SEQRES 11 B 299 LEU GLU GLU HIS GLY TYR LEU GLU ALA TYR GLU VAL THR SEQRES 12 B 299 SER PRO LYS VAL ILE PRO GLU GLN PRO GLU PRO THR PHE SEQRES 13 B 299 TYR SER ARG GLU MET VAL ALA ILE PRO SER ALA HIS LEU SEQRES 14 B 299 ALA ALA GLY PHE PRO LEU SER GLU VAL GLY ARG PRO LEU SEQRES 15 B 299 GLU ASP HIS GLU ILE VAL ARG PHE ASN ARG PRO ALA VAL SEQRES 16 B 299 GLU GLN ASP GLY GLU ALA LEU VAL GLY VAL VAL SER ALA SEQRES 17 B 299 ILE ASP HIS PRO PHE GLY ASN VAL TRP THR ASN ILE HIS SEQRES 18 B 299 ARG THR ASP LEU GLU LYS ALA GLY ILE GLY TYR GLY ALA SEQRES 19 B 299 ARG LEU ARG LEU THR LEU ASP GLY VAL LEU PRO PHE GLU SEQRES 20 B 299 ALA PRO LEU THR PRO THR PHE ALA ASP ALA GLY GLU ILE SEQRES 21 B 299 GLY ASN ILE ALA ILE TYR LEU ASN SER ARG GLY TYR LEU SEQRES 22 B 299 SER ILE ALA ARG ASN ALA ALA SER LEU ALA TYR PRO TYR SEQRES 23 B 299 HIS LEU LYS GLU GLY MET SER ALA ARG VAL GLU ALA ARG SEQRES 1 C 299 MET ALA ALA ASN SER THR ARG ARG PRO ILE ILE ALA PHE SEQRES 2 C 299 MET SER ASP LEU GLY THR THR ASP ASP SER VAL ALA GLN SEQRES 3 C 299 CYS LYS GLY LEU MET TYR SER ILE CYS PRO ASP VAL THR SEQRES 4 C 299 VAL VAL ASP VAL CYS HIS SER MET THR PRO TRP ASP VAL SEQRES 5 C 299 GLU GLU GLY ALA ARG TYR ILE VAL ASP LEU PRO ARG PHE SEQRES 6 C 299 PHE PRO GLU GLY THR VAL PHE ALA THR THR THR TYR PRO SEQRES 7 C 299 ALA THR GLY THR THR THR ARG SER VAL ALA VAL ARG ILE SEQRES 8 C 299 LYS GLN ALA ALA LYS GLY GLY ALA ARG GLY GLN TRP ALA SEQRES 9 C 299 GLY SER GLY ALA GLY PHE GLU ARG ALA GLU GLY SER TYR SEQRES 10 C 299 ILE TYR ILE ALA PRO ASN ASN GLY LEU LEU THR THR VAL SEQRES 11 C 299 LEU GLU GLU HIS GLY TYR LEU GLU ALA TYR GLU VAL THR SEQRES 12 C 299 SER PRO LYS VAL ILE PRO GLU GLN PRO GLU PRO THR PHE SEQRES 13 C 299 TYR SER ARG GLU MET VAL ALA ILE PRO SER ALA HIS LEU SEQRES 14 C 299 ALA ALA GLY PHE PRO LEU SER GLU VAL GLY ARG PRO LEU SEQRES 15 C 299 GLU ASP HIS GLU ILE VAL ARG PHE ASN ARG PRO ALA VAL SEQRES 16 C 299 GLU GLN ASP GLY GLU ALA LEU VAL GLY VAL VAL SER ALA SEQRES 17 C 299 ILE ASP HIS PRO PHE GLY ASN VAL TRP THR ASN ILE HIS SEQRES 18 C 299 ARG THR ASP LEU GLU LYS ALA GLY ILE GLY TYR GLY ALA SEQRES 19 C 299 ARG LEU ARG LEU THR LEU ASP GLY VAL LEU PRO PHE GLU SEQRES 20 C 299 ALA PRO LEU THR PRO THR PHE ALA ASP ALA GLY GLU ILE SEQRES 21 C 299 GLY ASN ILE ALA ILE TYR LEU ASN SER ARG GLY TYR LEU SEQRES 22 C 299 SER ILE ALA ARG ASN ALA ALA SER LEU ALA TYR PRO TYR SEQRES 23 C 299 HIS LEU LYS GLU GLY MET SER ALA ARG VAL GLU ALA ARG HET 5AD A1299 18 HET 5AD B1299 18 HET 5AD B1300 18 HET CL C1299 1 HETNAM 5AD 5'-DEOXYADENOSINE HETNAM CL CHLORIDE ION FORMUL 4 5AD 3(C10 H13 N5 O3) FORMUL 7 CL CL 1- FORMUL 8 HOH *336(H2 O) HELIX 1 1 ASP A 22 CYS A 35 1 14 HELIX 2 2 ASP A 51 TYR A 58 1 8 HELIX 3 3 LEU A 62 PHE A 66 5 5 HELIX 4 4 LEU A 127 GLY A 135 1 9 HELIX 5 5 PHE A 156 MET A 161 1 6 HELIX 6 6 VAL A 162 GLY A 172 1 11 HELIX 7 7 PRO A 174 VAL A 178 5 5 HELIX 8 8 GLU A 183 ILE A 187 5 5 HELIX 9 9 ARG A 222 ALA A 228 1 7 HELIX 10 10 THR A 253 GLY A 258 5 6 HELIX 11 11 ASP B 22 CYS B 35 1 14 HELIX 12 12 ASP B 51 TYR B 58 1 8 HELIX 13 13 LEU B 62 PHE B 66 5 5 HELIX 14 14 LEU B 127 GLY B 135 1 9 HELIX 15 15 PHE B 156 MET B 161 1 6 HELIX 16 16 VAL B 162 ALA B 171 1 10 HELIX 17 17 PRO B 174 VAL B 178 5 5 HELIX 18 18 GLU B 183 ILE B 187 5 5 HELIX 19 19 ARG B 222 GLU B 226 1 5 HELIX 20 20 THR B 253 GLY B 258 5 6 HELIX 21 21 ASP C 22 CYS C 35 1 14 HELIX 22 22 ASP C 51 VAL C 60 1 10 HELIX 23 23 LEU C 62 PHE C 66 5 5 HELIX 24 24 LEU C 127 GLY C 135 1 9 HELIX 25 25 PHE C 156 MET C 161 1 6 HELIX 26 26 VAL C 162 ALA C 171 1 10 HELIX 27 27 PRO C 174 VAL C 178 5 5 HELIX 28 28 GLU C 183 ILE C 187 5 5 HELIX 29 29 ARG C 222 ALA C 228 1 7 HELIX 30 30 THR C 253 GLY C 258 5 6 HELIX 31 31 LEU C 282 HIS C 287 1 6 SHEET 1 AA 6 THR A 39 CYS A 44 0 SHEET 2 AA 6 ILE A 10 SER A 15 1 O ILE A 11 N VAL A 41 SHEET 3 AA 6 VAL A 71 THR A 75 1 O VAL A 71 N ALA A 12 SHEET 4 AA 6 ILE A 118 ALA A 121 1 O ILE A 118 N PHE A 72 SHEET 5 AA 6 VAL A 87 ILE A 91 -1 O VAL A 87 N ALA A 121 SHEET 6 AA 6 TYR A 136 GLU A 141 -1 N LEU A 137 O ARG A 90 SHEET 1 AB 5 GLU A 196 ASP A 198 0 SHEET 2 AB 5 ALA A 201 ASP A 210 -1 O ALA A 201 N ASP A 198 SHEET 3 AB 5 SER A 293 GLU A 297 -1 O ALA A 294 N GLY A 204 SHEET 4 AB 5 ARG A 235 LEU A 240 -1 O ARG A 237 N GLU A 297 SHEET 5 AB 5 LEU A 244 PRO A 249 -1 O LEU A 244 N LEU A 240 SHEET 1 AC 5 GLU A 196 ASP A 198 0 SHEET 2 AC 5 ALA A 201 ASP A 210 -1 O ALA A 201 N ASP A 198 SHEET 3 AC 5 ASN A 215 HIS A 221 -1 O ASN A 215 N ASP A 210 SHEET 4 AC 5 TYR A 272 ARG A 277 -1 O LEU A 273 N THR A 218 SHEET 5 AC 5 ILE A 263 LEU A 267 -1 O ALA A 264 N ALA A 276 SHEET 1 BA 6 THR B 39 CYS B 44 0 SHEET 2 BA 6 ILE B 10 SER B 15 1 O ILE B 11 N VAL B 41 SHEET 3 BA 6 VAL B 71 THR B 75 1 O VAL B 71 N ALA B 12 SHEET 4 BA 6 ILE B 118 ALA B 121 1 O ILE B 118 N PHE B 72 SHEET 5 BA 6 VAL B 87 ILE B 91 -1 O VAL B 87 N ALA B 121 SHEET 6 BA 6 TYR B 136 GLU B 141 -1 N LEU B 137 O ARG B 90 SHEET 1 BB 5 GLU B 196 ASP B 198 0 SHEET 2 BB 5 ALA B 201 ASP B 210 -1 O ALA B 201 N ASP B 198 SHEET 3 BB 5 SER B 293 GLU B 297 -1 O ALA B 294 N GLY B 204 SHEET 4 BB 5 ARG B 235 LEU B 240 -1 O ARG B 237 N GLU B 297 SHEET 5 BB 5 LEU B 244 PRO B 249 -1 O LEU B 244 N LEU B 240 SHEET 1 BC 5 GLU B 196 ASP B 198 0 SHEET 2 BC 5 ALA B 201 ASP B 210 -1 O ALA B 201 N ASP B 198 SHEET 3 BC 5 ASN B 215 HIS B 221 -1 O ASN B 215 N ASP B 210 SHEET 4 BC 5 TYR B 272 ARG B 277 -1 O LEU B 273 N THR B 218 SHEET 5 BC 5 ILE B 263 LEU B 267 -1 O ALA B 264 N ALA B 276 SHEET 1 CA 6 THR C 39 ASP C 42 0 SHEET 2 CA 6 ILE C 10 SER C 15 1 O ILE C 11 N VAL C 41 SHEET 3 CA 6 VAL C 71 THR C 75 1 O VAL C 71 N ALA C 12 SHEET 4 CA 6 TYR C 117 ALA C 121 1 O ILE C 118 N PHE C 72 SHEET 5 CA 6 VAL C 87 ILE C 91 -1 O VAL C 87 N ALA C 121 SHEET 6 CA 6 TYR C 136 GLU C 141 -1 N LEU C 137 O ARG C 90 SHEET 1 CB 9 GLU C 196 ASP C 198 0 SHEET 2 CB 9 ALA C 201 ASP C 210 -1 O ALA C 201 N ASP C 198 SHEET 3 CB 9 ASN C 215 HIS C 221 -1 O ASN C 215 N ASP C 210 SHEET 4 CB 9 TYR C 272 ARG C 277 -1 O LEU C 273 N THR C 218 SHEET 5 CB 9 ILE C 263 LEU C 267 -1 O ALA C 264 N ALA C 276 SHEET 6 CB 9 LEU C 244 THR C 251 1 O PRO C 249 N ILE C 265 SHEET 7 CB 9 ARG C 235 LEU C 240 -1 O LEU C 236 N ALA C 248 SHEET 8 CB 9 SER C 293 GLU C 297 -1 O ARG C 295 N THR C 239 SHEET 9 CB 9 GLU C 196 ASP C 198 0 CISPEP 1 HIS A 211 PRO A 212 0 4.31 CISPEP 2 HIS B 211 PRO B 212 0 3.18 CISPEP 3 HIS C 211 PRO C 212 0 6.73 SITE 1 AC1 13 PHE A 213 ASN A 215 PHE A 254 ARG A 277 SITE 2 AC1 13 ALA A 279 ASP C 16 TRP C 50 THR C 76 SITE 3 AC1 13 TYR C 77 PRO C 78 THR C 80 THR C 155 SITE 4 AC1 13 SER C 158 SITE 1 AC2 13 ASP A 16 TRP A 50 TYR A 77 PRO A 78 SITE 2 AC2 13 THR A 80 THR A 155 TYR A 157 SER A 158 SITE 3 AC2 13 PHE B 213 ASN B 215 PHE B 254 ARG B 277 SITE 4 AC2 13 ALA B 279 SITE 1 AC3 14 ASP B 16 TRP B 50 TYR B 77 PRO B 78 SITE 2 AC3 14 THR B 80 THR B 155 PHE B 156 TYR B 157 SITE 3 AC3 14 SER B 158 PHE C 213 ASN C 215 PHE C 254 SITE 4 AC3 14 ARG C 277 ALA C 279 CRYST1 75.990 129.676 184.505 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013160 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007712 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005420 0.00000