HEADER CELL ADHESION 16-JAN-06 2CCL TITLE THE S45A, T46A MUTANT OF THE TYPE I COHESIN-DOCKERIN COMPLEX FROM THE TITLE 2 CELLULOSOME OF CLOSTRIDIUM THERMOCELLUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULOSOMAL SCAFFOLDING PROTEIN A; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: COHESIN 2 DOMAIN, RESIDUES 181-328; COMPND 5 SYNONYM: CELLULOSOMAL GLYCOPROTEIN S1/SL, CELLULOSE INTEGRATING COMPND 6 PROTEIN A, COHESIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ENDO-1,4-BETA-XYLANASE Y; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: RESIDUES 730-791; COMPND 12 SYNONYM: XYLANASE Y, XYLY, 1,4-BETA-D-XYLAN XYLANOHYDROLASE Y; COMPND 13 EC: 3.2.1.8; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_TAXID: 1515; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 8 ORGANISM_TAXID: 1515; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELL ADHESION, COHESIN-DOCKERIN COMPLEX, CELLULOSOME, COHESIN, KEYWDS 2 DOCKERIN, CLOSTRIDIUM THERMOCELLUM, SCAFFOLDING, CELLULOSE KEYWDS 3 DEGRADATION, HYDROLASE, GLYCOSIDASE EXPDTA X-RAY DIFFRACTION AUTHOR A.L.CARVALHO,F.M.V.DIAS,J.A.M.PRATES,L.M.A.FERREIRA,H.J.GILBERT, AUTHOR 2 G.J.DAVIES,M.J.ROMAO,C.M.G.A.FONTES REVDAT 6 13-DEC-23 2CCL 1 LINK REVDAT 5 13-JUL-11 2CCL 1 VERSN REVDAT 4 24-FEB-09 2CCL 1 VERSN REVDAT 3 27-MAR-07 2CCL 1 JRNL REVDAT 2 27-FEB-07 2CCL 1 REMARK REVDAT 1 13-FEB-07 2CCL 0 JRNL AUTH A.L.CARVALHO,F.M.V.DIAS,T.NAGY,J.A.M.PRATES,M.R.PROCTOR, JRNL AUTH 2 N.SMITH,E.A.BAYER,G.J.DAVIES,L.M.A.FERREIRA,M.J.ROMAO, JRNL AUTH 3 C.M.G.A.FONTES,H.J.GILBERT JRNL TITL EVIDENCE FOR A DUAL BINDING MODE OF DOCKERIN MODULES TO JRNL TITL 2 COHESINS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 3089 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17360613 JRNL DOI 10.1073/PNAS.0611173104 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 25478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2837 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1718 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 165 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3164 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 496 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : -0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.221 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.266 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3249 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4421 ; 0.973 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 5.441 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;33.175 ;24.697 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 534 ;12.191 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;15.974 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 532 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2418 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1575 ; 0.171 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2253 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 391 ; 0.114 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 118 ; 0.153 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 44 ; 0.126 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2155 ; 0.306 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3400 ; 0.529 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1212 ; 0.772 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1017 ; 1.291 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 152 REMARK 3 ORIGIN FOR THE GROUP (A): 18.3580 0.6050 12.7660 REMARK 3 T TENSOR REMARK 3 T11: 0.0611 T22: -0.0377 REMARK 3 T33: -0.0503 T12: 0.0079 REMARK 3 T13: -0.0127 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.4700 L22: 1.1962 REMARK 3 L33: 0.4477 L12: 0.4872 REMARK 3 L13: -0.2897 L23: -0.5070 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: 0.0077 S13: 0.0155 REMARK 3 S21: -0.0502 S22: 0.0185 S23: 0.0004 REMARK 3 S31: 0.0211 S32: -0.0221 S33: -0.0200 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 59 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3960 29.3050 14.1900 REMARK 3 T TENSOR REMARK 3 T11: -0.0229 T22: -0.0003 REMARK 3 T33: -0.0579 T12: 0.0107 REMARK 3 T13: -0.0035 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 0.3789 L22: 1.4036 REMARK 3 L33: 0.2266 L12: 0.6443 REMARK 3 L13: -0.2888 L23: -0.4465 REMARK 3 S TENSOR REMARK 3 S11: 0.1647 S12: -0.0729 S13: -0.0160 REMARK 3 S21: 0.2250 S22: -0.1014 S23: -0.0380 REMARK 3 S31: 0.0244 S32: 0.0412 S33: -0.0633 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 59 REMARK 3 ORIGIN FOR THE GROUP (A): -2.7460 -9.5930 16.9830 REMARK 3 T TENSOR REMARK 3 T11: -0.0325 T22: -0.0086 REMARK 3 T33: -0.0673 T12: 0.0110 REMARK 3 T13: -0.0008 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.0032 L22: 0.5967 REMARK 3 L33: 0.0649 L12: -0.0436 REMARK 3 L13: -0.0144 L23: 0.1969 REMARK 3 S TENSOR REMARK 3 S11: 0.0883 S12: -0.0064 S13: 0.1759 REMARK 3 S21: 0.2220 S22: -0.0621 S23: 0.2502 REMARK 3 S31: -0.0888 S32: -0.0066 S33: -0.0262 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D -1 D 59 REMARK 3 ORIGIN FOR THE GROUP (A): -3.7460 37.4260 7.7190 REMARK 3 T TENSOR REMARK 3 T11: 0.0482 T22: -0.0026 REMARK 3 T33: -0.0571 T12: -0.0067 REMARK 3 T13: -0.0129 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.6530 L22: 0.8161 REMARK 3 L33: 1.1641 L12: -0.4355 REMARK 3 L13: 0.6821 L23: -0.0381 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: -0.0667 S13: -0.0014 REMARK 3 S21: -0.0602 S22: -0.0373 S23: 0.0203 REMARK 3 S31: -0.0295 S32: -0.0644 S33: 0.0360 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2CCL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1290027245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 227515 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 28.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.02000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 29.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1OHZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.32350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN B, SER 777 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, THR 778 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN D, SER 777 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN D, THR 778 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 ASP A 4 REMARK 465 HIS A 154 REMARK 465 HIS A 155 REMARK 465 HIS A 156 REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 465 MET B -3 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 SER C 3 REMARK 465 ASP C 4 REMARK 465 HIS C 154 REMARK 465 HIS C 155 REMARK 465 HIS C 156 REMARK 465 HIS C 157 REMARK 465 HIS C 158 REMARK 465 MET D -3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL B -2 CG1 CG2 REMARK 470 ARG C 43 NH1 NH2 REMARK 470 VAL D -2 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE C 124 81.67 -155.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C2027 DISTANCE = 6.31 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1060 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 2 OD1 REMARK 620 2 ASN B 4 OD1 83.6 REMARK 620 3 ASP B 6 OD1 84.5 76.8 REMARK 620 4 THR B 8 O 82.4 154.7 81.0 REMARK 620 5 ASP B 13 OD1 95.4 71.9 148.5 130.3 REMARK 620 6 ASP B 13 OD2 110.9 122.8 155.2 82.0 52.4 REMARK 620 7 HOH B2022 O 165.9 88.6 82.3 100.5 93.2 83.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1061 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 36 OD1 REMARK 620 2 ASP B 38 OD1 81.4 REMARK 620 3 ASN B 40 OD1 86.9 77.7 REMARK 620 4 SER B 42 O 85.4 161.1 88.2 REMARK 620 5 ASP B 47 OD1 88.1 76.6 154.2 116.6 REMARK 620 6 ASP B 47 OD2 113.4 123.1 151.7 74.7 51.1 REMARK 620 7 HOH B2071 O 163.2 82.4 85.6 109.3 92.2 79.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D1061 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 2 OD1 REMARK 620 2 ASN D 4 OD1 84.3 REMARK 620 3 ASP D 6 OD1 84.0 75.9 REMARK 620 4 THR D 8 O 84.8 154.8 80.3 REMARK 620 5 ASP D 13 OD1 95.2 74.5 150.4 129.2 REMARK 620 6 ASP D 13 OD2 112.4 125.6 152.7 79.6 53.4 REMARK 620 7 HOH D2023 O 168.4 87.2 86.3 99.7 90.1 79.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D1060 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 36 OD1 REMARK 620 2 ASP D 38 OD1 81.4 REMARK 620 3 ASN D 40 OD1 81.8 75.2 REMARK 620 4 SER D 42 O 85.0 155.6 82.9 REMARK 620 5 ASP D 47 OD1 91.8 82.2 157.2 118.5 REMARK 620 6 ASP D 47 OD2 120.3 128.3 147.3 76.2 53.4 REMARK 620 7 HOH D2065 O 157.2 78.8 82.4 109.2 96.6 81.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A1154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A1155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B1060 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B1061 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D1060 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D1061 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DYO RELATED DB: PDB REMARK 900 XYLAN-BINDING DOMAIN FROM CBM 22, FORMALLY X6B DOMAIN REMARK 900 RELATED ID: 1GKK RELATED DB: PDB REMARK 900 FERULOYL ESTERASE DOMAIN OF XYNY FROM CLOSTRIDIUM THERMOCELLUM REMARK 900 RELATED ID: 1GKL RELATED DB: PDB REMARK 900 S954A MUTANT OF THE FERULOYL ESTERASE MODULE FROM CLOSTRIDIUM REMARK 900 THERMOCELLUM COMPLEXED WITH FERULIC ACID REMARK 900 RELATED ID: 1H6X RELATED DB: PDB REMARK 900 THE ROLE OF CONSERVED AMONI ACIDS IN THE CLEFT OF THE C-TERMINAL REMARK 900 FAMILY 22 CARBOHYDRATE BINDING MODULE OF CLOSTRIDIUM THERMOCELLUM REMARK 900 XYN10B IN LIGAND BINDING REMARK 900 RELATED ID: 1H6Y RELATED DB: PDB REMARK 900 THE ROLE OF CONSERVED AMONI ACIDS IN THE CLEFT OF THE C-TERMINAL REMARK 900 FAMILY 22 CARBOHYDRATE BINDING MODULE OF CLOSTRIDIUM THERMOCELLUM REMARK 900 XYN10B IN LIGAND BINDING REMARK 900 RELATED ID: 1OHZ RELATED DB: PDB REMARK 900 COHESIN-DOCKERIN COMPLEX FROM THE CELLULOSOME OF CLOSTRIDIUM REMARK 900 THERMOCELLUM REMARK 900 RELATED ID: 1WB4 RELATED DB: PDB REMARK 900 S954A MUTANT OF THE FERULOYL ESTERASE MODULE FROM CLOSTRIDIUM REMARK 900 THERMOCELLUM COMPLEXED WITH SINAPINATE REMARK 900 RELATED ID: 1WB5 RELATED DB: PDB REMARK 900 S954A MUTANT OF THE FERULOYL ESTERASE MODULE FROM CLOSTRIDIUM REMARK 900 THERMOCELLUM COMPLEXED WITH SYRINGATE REMARK 900 RELATED ID: 1WB6 RELATED DB: PDB REMARK 900 S954A MUTANT OF THE FERULOYL ESTERASE MODULE FROM CLOSTRIDIUM REMARK 900 THERMOCELLUM COMPLEXED WITH VANILLATE REMARK 900 RELATED ID: 1ANU RELATED DB: PDB REMARK 900 COHESIN-2 DOMAIN OF THE CELLULOSOME FROM CLOSTRIDIUM THERMOCELLUM REMARK 900 RELATED ID: 1AOH RELATED DB: PDB REMARK 900 SINGLE COHESIN DOMAIN FROM THE SCAFFOLDING PROTEIN CIPA OFTHE REMARK 900 CLOSTRIDIUM THERMOCELLUM CELLULOSOME REMARK 900 RELATED ID: 1NBC RELATED DB: PDB REMARK 900 BACTERIAL TYPE 3A CELLULOSE-BINDING DOMAIN DBREF 2CCL A 1 2 PDB 2CCL 2CCL 1 2 DBREF 2CCL A 3 150 UNP Q06851 CIPA_CLOTM 181 328 DBREF 2CCL A 151 158 PDB 2CCL 2CCL 151 158 DBREF 2CCL B -3 -3 PDB 2CCL 2CCL -3 -3 DBREF 2CCL B -2 59 UNP P51584 XYNY_CLOTM 730 791 DBREF 2CCL C 1 2 PDB 2CCL 2CCL 1 2 DBREF 2CCL C 3 150 UNP Q06851 CIPA_CLOTM 181 328 DBREF 2CCL C 151 158 PDB 2CCL 2CCL 151 158 DBREF 2CCL D -3 -3 PDB 2CCL 2CCL -3 -3 DBREF 2CCL D -2 59 UNP P51584 XYNY_CLOTM 730 791 SEQADV 2CCL ALA B 45 UNP P51584 SER 777 ENGINEERED MUTATION SEQADV 2CCL ALA B 46 UNP P51584 THR 778 ENGINEERED MUTATION SEQADV 2CCL ALA D 45 UNP P51584 SER 777 ENGINEERED MUTATION SEQADV 2CCL ALA D 46 UNP P51584 THR 778 ENGINEERED MUTATION SEQRES 1 A 158 MET ALA SER ASP GLY VAL VAL VAL GLU ILE GLY LYS VAL SEQRES 2 A 158 THR GLY SER VAL GLY THR THR VAL GLU ILE PRO VAL TYR SEQRES 3 A 158 PHE ARG GLY VAL PRO SER LYS GLY ILE ALA ASN CYS ASP SEQRES 4 A 158 PHE VAL PHE ARG TYR ASP PRO ASN VAL LEU GLU ILE ILE SEQRES 5 A 158 GLY ILE ASP PRO GLY ASP ILE ILE VAL ASP PRO ASN PRO SEQRES 6 A 158 THR LYS SER PHE ASP THR ALA ILE TYR PRO ASP ARG LYS SEQRES 7 A 158 ILE ILE VAL PHE LEU PHE ALA GLU ASP SER GLY THR GLY SEQRES 8 A 158 ALA TYR ALA ILE THR LYS ASP GLY VAL PHE ALA LYS ILE SEQRES 9 A 158 ARG ALA THR VAL LYS SER SER ALA PRO GLY TYR ILE THR SEQRES 10 A 158 PHE ASP GLU VAL GLY GLY PHE ALA ASP ASN ASP LEU VAL SEQRES 11 A 158 GLU GLN LYS VAL SER PHE ILE ASP GLY GLY VAL ASN VAL SEQRES 12 A 158 GLY ASN ALA THR PRO THR LYS LEU GLU HIS HIS HIS HIS SEQRES 13 A 158 HIS HIS SEQRES 1 B 63 MET VAL LEU LEU GLY ASP VAL ASN GLY ASP GLY THR ILE SEQRES 2 B 63 ASN SER THR ASP LEU THR MET LEU LYS ARG SER VAL LEU SEQRES 3 B 63 ARG ALA ILE THR LEU THR ASP ASP ALA LYS ALA ARG ALA SEQRES 4 B 63 ASP VAL ASP LYS ASN GLY SER ILE ASN ALA ALA ASP VAL SEQRES 5 B 63 LEU LEU LEU SER ARG TYR LEU LEU ARG VAL ILE SEQRES 1 C 158 MET ALA SER ASP GLY VAL VAL VAL GLU ILE GLY LYS VAL SEQRES 2 C 158 THR GLY SER VAL GLY THR THR VAL GLU ILE PRO VAL TYR SEQRES 3 C 158 PHE ARG GLY VAL PRO SER LYS GLY ILE ALA ASN CYS ASP SEQRES 4 C 158 PHE VAL PHE ARG TYR ASP PRO ASN VAL LEU GLU ILE ILE SEQRES 5 C 158 GLY ILE ASP PRO GLY ASP ILE ILE VAL ASP PRO ASN PRO SEQRES 6 C 158 THR LYS SER PHE ASP THR ALA ILE TYR PRO ASP ARG LYS SEQRES 7 C 158 ILE ILE VAL PHE LEU PHE ALA GLU ASP SER GLY THR GLY SEQRES 8 C 158 ALA TYR ALA ILE THR LYS ASP GLY VAL PHE ALA LYS ILE SEQRES 9 C 158 ARG ALA THR VAL LYS SER SER ALA PRO GLY TYR ILE THR SEQRES 10 C 158 PHE ASP GLU VAL GLY GLY PHE ALA ASP ASN ASP LEU VAL SEQRES 11 C 158 GLU GLN LYS VAL SER PHE ILE ASP GLY GLY VAL ASN VAL SEQRES 12 C 158 GLY ASN ALA THR PRO THR LYS LEU GLU HIS HIS HIS HIS SEQRES 13 C 158 HIS HIS SEQRES 1 D 63 MET VAL LEU LEU GLY ASP VAL ASN GLY ASP GLY THR ILE SEQRES 2 D 63 ASN SER THR ASP LEU THR MET LEU LYS ARG SER VAL LEU SEQRES 3 D 63 ARG ALA ILE THR LEU THR ASP ASP ALA LYS ALA ARG ALA SEQRES 4 D 63 ASP VAL ASP LYS ASN GLY SER ILE ASN ALA ALA ASP VAL SEQRES 5 D 63 LEU LEU LEU SER ARG TYR LEU LEU ARG VAL ILE HET PO4 A1154 5 HET PO4 A1155 5 HET CA B1060 1 HET CA B1061 1 HET CA D1060 1 HET CA D1061 1 HETNAM PO4 PHOSPHATE ION HETNAM CA CALCIUM ION FORMUL 5 PO4 2(O4 P 3-) FORMUL 7 CA 4(CA 2+) FORMUL 11 HOH *496(H2 O) HELIX 1 1 ASN A 64 LYS A 67 5 4 HELIX 2 2 ASN B 10 LEU B 22 1 13 HELIX 3 3 THR B 28 ASP B 36 1 9 HELIX 4 4 ASN B 44 LEU B 56 1 13 HELIX 5 5 ASN C 64 LYS C 67 5 4 HELIX 6 6 ASN D 10 LEU D 22 1 13 HELIX 7 7 THR D 28 ASP D 36 1 9 HELIX 8 8 ASN D 44 LEU D 56 1 13 SHEET 1 AA 5 LEU A 49 PRO A 56 0 SHEET 2 AA 5 GLY A 99 VAL A 108 -1 O LYS A 103 N ASP A 55 SHEET 3 AA 5 THR A 20 ARG A 28 -1 O VAL A 21 N ALA A 106 SHEET 4 AA 5 VAL A 6 ILE A 10 -1 O VAL A 7 N ARG A 28 SHEET 5 AA 5 VAL A 134 ILE A 137 1 O SER A 135 N VAL A 8 SHEET 1 AB 6 LYS A 12 VAL A 13 0 SHEET 2 AB 6 GLY A 139 VAL A 141 1 O GLY A 140 N VAL A 13 SHEET 3 AB 6 GLY A 114 ALA A 125 -1 O GLY A 114 N VAL A 141 SHEET 4 AB 6 ASN A 37 ARG A 43 -1 O ASN A 37 N ALA A 125 SHEET 5 AB 6 ILE A 79 ALA A 85 -1 O ILE A 80 N PHE A 42 SHEET 6 AB 6 PHE A 69 TYR A 74 -1 O ASP A 70 N LEU A 83 SHEET 1 CA 5 LEU C 49 PRO C 56 0 SHEET 2 CA 5 GLY C 99 VAL C 108 -1 O LYS C 103 N ASP C 55 SHEET 3 CA 5 THR C 20 ARG C 28 -1 O VAL C 21 N ALA C 106 SHEET 4 CA 5 VAL C 6 ILE C 10 -1 O VAL C 7 N ARG C 28 SHEET 5 CA 5 VAL C 134 ILE C 137 1 O SER C 135 N VAL C 8 SHEET 1 CB 6 LYS C 12 VAL C 13 0 SHEET 2 CB 6 GLY C 139 VAL C 141 1 O GLY C 140 N VAL C 13 SHEET 3 CB 6 GLY C 114 ASP C 126 -1 O GLY C 114 N VAL C 141 SHEET 4 CB 6 ILE C 35 ARG C 43 -1 N ALA C 36 O ALA C 125 SHEET 5 CB 6 ILE C 79 ALA C 85 -1 O ILE C 80 N PHE C 42 SHEET 6 CB 6 PHE C 69 TYR C 74 -1 O ASP C 70 N LEU C 83 LINK OD1 ASP B 2 CA CA B1060 1555 1555 2.31 LINK OD1 ASN B 4 CA CA B1060 1555 1555 2.48 LINK OD1 ASP B 6 CA CA B1060 1555 1555 2.41 LINK O THR B 8 CA CA B1060 1555 1555 2.31 LINK OD1 ASP B 13 CA CA B1060 1555 1555 2.54 LINK OD2 ASP B 13 CA CA B1060 1555 1555 2.43 LINK OD1 ASP B 36 CA CA B1061 1555 1555 2.35 LINK OD1 ASP B 38 CA CA B1061 1555 1555 2.41 LINK OD1 ASN B 40 CA CA B1061 1555 1555 2.41 LINK O SER B 42 CA CA B1061 1555 1555 2.23 LINK OD1 ASP B 47 CA CA B1061 1555 1555 2.60 LINK OD2 ASP B 47 CA CA B1061 1555 1555 2.45 LINK CA CA B1060 O HOH B2022 1555 1555 2.48 LINK CA CA B1061 O HOH B2071 1555 1555 2.42 LINK OD1 ASP D 2 CA CA D1061 1555 1555 2.24 LINK OD1 ASN D 4 CA CA D1061 1555 1555 2.40 LINK OD1 ASP D 6 CA CA D1061 1555 1555 2.39 LINK O THR D 8 CA CA D1061 1555 1555 2.30 LINK OD1 ASP D 13 CA CA D1061 1555 1555 2.41 LINK OD2 ASP D 13 CA CA D1061 1555 1555 2.47 LINK OD1 ASP D 36 CA CA D1060 1555 1555 2.36 LINK OD1 ASP D 38 CA CA D1060 1555 1555 2.44 LINK OD1 ASN D 40 CA CA D1060 1555 1555 2.39 LINK O SER D 42 CA CA D1060 1555 1555 2.31 LINK OD1 ASP D 47 CA CA D1060 1555 1555 2.47 LINK OD2 ASP D 47 CA CA D1060 1555 1555 2.43 LINK CA CA D1060 O HOH D2065 1555 1555 2.37 LINK CA CA D1061 O HOH D2023 1555 1555 2.48 SITE 1 AC1 6 GLY A 29 ASP A 98 HOH A2163 HOH A2164 SITE 2 AC1 6 HOH A2165 HOH A2166 SITE 1 AC2 6 PRO A 31 SER A 32 LYS A 33 ASP A 126 SITE 2 AC2 6 GLN A 132 HOH A2167 SITE 1 AC3 6 ASP B 2 ASN B 4 ASP B 6 THR B 8 SITE 2 AC3 6 ASP B 13 HOH B2022 SITE 1 AC4 6 ASP B 36 ASP B 38 ASN B 40 SER B 42 SITE 2 AC4 6 ASP B 47 HOH B2071 SITE 1 AC5 6 ASP D 36 ASP D 38 ASN D 40 SER D 42 SITE 2 AC5 6 ASP D 47 HOH D2065 SITE 1 AC6 6 ASP D 2 ASN D 4 ASP D 6 THR D 8 SITE 2 AC6 6 ASP D 13 HOH D2023 CRYST1 48.550 92.647 49.859 90.00 93.95 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020597 0.000000 0.001422 0.00000 SCALE2 0.000000 0.010794 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020104 0.00000