data_2CCV # _entry.id 2CCV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2CCV PDBE EBI-27256 WWPDB D_1290027256 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2CE6 _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'STRUCTURE OF HELIX POMATIA AGGLUTININ WITH NO LIGANDS' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CCV _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2006-01-18 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sanchez, J.-F.' 1 'Lescar, J.' 2 'Chazalet, V.' 3 'Audfray, A.' 4 'Gautier, C.' 5 'Gagnon, J.' 6 'Breton, C.' 7 'Imberty, A.' 8 'Mitchell, E.P.' 9 # _citation.id primary _citation.title 'Biochemical and Structural Analysis of Helix Pomatia Agglutinin. A Hexameric Lectin with a Novel Fold.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 281 _citation.page_first 20171 _citation.page_last ? _citation.year 2006 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16704980 _citation.pdbx_database_id_DOI 10.1074/JBC.M603452200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sanchez, J.-F.' 1 ? primary 'Lescar, J.' 2 ? primary 'Chazalet, V.' 3 ? primary 'Audfray, A.' 4 ? primary 'Gagnon, J.' 5 ? primary 'Alvarez, R.' 6 ? primary 'Breton, C.' 7 ? primary 'Imberty, A.' 8 ? primary 'Mitchell, E.P.' 9 ? # _cell.entry_id 2CCV _cell.length_a 48.450 _cell.length_b 48.450 _cell.length_c 286.120 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CCV _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'HELIX POMATIA AGGLUTININ' 11326.722 1 ? ? ? 'GLYCOLYSIS SITE AT N34 WITH GLUCOSEAMINE BOUND' 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-alpha-D-galactopyranose 221.208 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 6 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 7 water nat water 18.015 99 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;RVQSGKIDCGDDAGWAKVPSDDPGRDNTRELAKNITFASPYCRPPVVLLSITQLDVEQSQNLRVIARLYSVSPSGFKASC YTWHNTKVYSMSISWISIENY ; _entity_poly.pdbx_seq_one_letter_code_can ;RVQSGKIDCGDDAGWAKVPSDDPGRDNTRELAKNITFASPYCRPPVVLLSITQLDVEQSQNLRVIARLYSVSPSGFKASC YTWHNTKVYSMSISWISIENY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 VAL n 1 3 GLN n 1 4 SER n 1 5 GLY n 1 6 LYS n 1 7 ILE n 1 8 ASP n 1 9 CYS n 1 10 GLY n 1 11 ASP n 1 12 ASP n 1 13 ALA n 1 14 GLY n 1 15 TRP n 1 16 ALA n 1 17 LYS n 1 18 VAL n 1 19 PRO n 1 20 SER n 1 21 ASP n 1 22 ASP n 1 23 PRO n 1 24 GLY n 1 25 ARG n 1 26 ASP n 1 27 ASN n 1 28 THR n 1 29 ARG n 1 30 GLU n 1 31 LEU n 1 32 ALA n 1 33 LYS n 1 34 ASN n 1 35 ILE n 1 36 THR n 1 37 PHE n 1 38 ALA n 1 39 SER n 1 40 PRO n 1 41 TYR n 1 42 CYS n 1 43 ARG n 1 44 PRO n 1 45 PRO n 1 46 VAL n 1 47 VAL n 1 48 LEU n 1 49 LEU n 1 50 SER n 1 51 ILE n 1 52 THR n 1 53 GLN n 1 54 LEU n 1 55 ASP n 1 56 VAL n 1 57 GLU n 1 58 GLN n 1 59 SER n 1 60 GLN n 1 61 ASN n 1 62 LEU n 1 63 ARG n 1 64 VAL n 1 65 ILE n 1 66 ALA n 1 67 ARG n 1 68 LEU n 1 69 TYR n 1 70 SER n 1 71 VAL n 1 72 SER n 1 73 PRO n 1 74 SER n 1 75 GLY n 1 76 PHE n 1 77 LYS n 1 78 ALA n 1 79 SER n 1 80 CYS n 1 81 TYR n 1 82 THR n 1 83 TRP n 1 84 HIS n 1 85 ASN n 1 86 THR n 1 87 LYS n 1 88 VAL n 1 89 TYR n 1 90 SER n 1 91 MET n 1 92 SER n 1 93 ILE n 1 94 SER n 1 95 TRP n 1 96 ILE n 1 97 SER n 1 98 ILE n 1 99 GLU n 1 100 ASN n 1 101 TYR n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name 'ROMAN SNAIL' _entity_src_nat.pdbx_organism_scientific 'HELIX POMATIA' _entity_src_nat.pdbx_ncbi_taxonomy_id 6536 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ 'ALBUMIN GLAND' _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q2F1K8_HELPO _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q2F1K8 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2CCV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 101 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q2F1K8 _struct_ref_seq.db_align_beg 21 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 121 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 101 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2CCV ASP A 11 ? UNP Q2F1K8 ASN 31 conflict 11 1 1 2CCV SER A 74 ? UNP Q2F1K8 THR 94 conflict 74 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A2G 'D-saccharide, alpha linking' . 2-acetamido-2-deoxy-alpha-D-galactopyranose ? 'C8 H15 N O6' 221.208 ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 2CCV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.9 _exptl_crystal.density_percent_sol 57 _exptl_crystal.description ;HYSS WAS USED TO DETERMINE THE POSITION OF THE ZINC ION AND THEN PHASES WERE GROWN USING ACORN AND ALL DATA TO 1.15A. THE DATA SET WAS SUBSEQUENTLY CUT TO 1.3A FOR REFINEMENT OF THE STRUCTURE. ; # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;HANGING DROP METHOD WITH PRECIPITATION SOLUTION CONTAINING LITHIUM SULPHATE (2 M) AND AMMONIUM SULPHATE (3.5 M) IN SODIUM CITRATE BUFFER (1.5 M, PH 6.5) ; # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2004-10-20 _diffrn_detector.details 'TOROIDAL MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator DIAMOND _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.933 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-2 _diffrn_source.pdbx_wavelength 0.933 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2CCV _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 11.200 _reflns.d_resolution_high 1.300 _reflns.number_obs 32736 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.05000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 22.4000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.440 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.30 _reflns_shell.d_res_low 1.33 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.31000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.270 _reflns_shell.pdbx_redundancy 5.25 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2CCV _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 30995 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.00 _refine.ls_d_res_high 1.30 _refine.ls_percent_reflns_obs 94.7 _refine.ls_R_factor_obs 0.1443 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.1790 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5 _refine.ls_number_reflns_R_free 1643 _refine.ls_number_parameters 8627 _refine.ls_number_restraints 11315 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ;THE ASN34 GLYCOLYSATION SITE HAS SOME WEAK DENSITY FOR THE FIRST GLCNAC RESIDUE OF THE SUGAR BUT NO FURTHER. THE FIRST SUGAR WAS THEREFORE MODELLED TO GIVE AN INDICATION OF THE LOCATION. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 2CCV _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 7 _refine_analyze.occupancy_sum_hydrogen 754.00 _refine_analyze.occupancy_sum_non_hydrogen 898.48 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 771 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 40 _refine_hist.number_atoms_solvent 99 _refine_hist.number_atoms_total 910 _refine_hist.d_res_high 1.30 _refine_hist.d_res_low 40.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.032 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0325 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.081 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.086 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.054 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.057 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.115 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 2CCV _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.1443 _pdbx_refine.free_R_factor_no_cutoff 0.1790 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 1643 _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff 0.1401 _pdbx_refine.free_R_factor_4sig_cutoff 0.1745 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 1467 _pdbx_refine.number_reflns_obs_4sig_cutoff 27631 # _struct.entry_id 2CCV _struct.title 'Structure of Helix Pomatia agglutinin with zinc and N-acetyl-alpha-D- galactoseamine (GalNAc)' _struct.pdbx_descriptor 'HELIX POMATIA AGGLUTININ' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CCV _struct_keywords.pdbx_keywords LECTIN _struct_keywords.text 'LECTIN, SNAIL, HELIX POMATIA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASP _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 11 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 16 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASP _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 11 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 16 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 80 SG ? ? A CYS 9 A CYS 80 1_555 ? ? ? ? ? ? ? 2.093 ? ? disulf2 disulf ? ? A CYS 42 SG ? ? ? 1_555 A CYS 42 SG ? ? A CYS 42 A CYS 42 5_556 ? ? ? ? ? ? ? 1.925 ? ? covale1 covale one ? A ASN 34 ND2 ? ? ? 1_555 F NAG . C1 ? ? A ASN 34 A NAG 1104 1_555 ? ? ? ? ? ? ? 1.326 ? N-Glycosylation metalc1 metalc ? ? A HIS 84 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 84 A ZN 1100 1_555 ? ? ? ? ? ? ? 2.015 ? ? metalc2 metalc ? ? A HIS 84 NE2 ? ? ? 16_545 B ZN . ZN ? ? A HIS 84 A ZN 1100 1_555 ? ? ? ? ? ? ? 2.059 ? ? metalc3 metalc ? ? B ZN . ZN ? ? ? 16_545 E ACT . O A ? A ZN 1100 A ACT 1103 1_555 ? ? ? ? ? ? ? 2.017 ? ? metalc4 metalc ? ? B ZN . ZN ? ? ? 1_555 E ACT . O A ? A ZN 1100 A ACT 1103 1_555 ? ? ? ? ? ? ? 2.010 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 3 ? AB ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 VAL A 2 ? CYS A 9 ? VAL A 2 CYS A 9 AA 2 VAL A 88 ? GLU A 99 ? VAL A 88 GLU A 99 AA 3 VAL A 46 ? GLU A 57 ? VAL A 46 GLU A 57 AB 1 ALA A 16 ? VAL A 18 ? ALA A 16 VAL A 18 AB 2 THR A 28 ? PHE A 37 ? THR A 28 PHE A 37 AB 3 GLY A 75 ? TRP A 83 ? GLY A 75 TRP A 83 AB 4 VAL A 64 ? SER A 72 ? VAL A 64 SER A 72 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ILE A 7 ? N ILE A 7 O ILE A 93 ? O ILE A 93 AA 2 3 N ILE A 98 ? N ILE A 98 O VAL A 46 ? O VAL A 46 AB 1 2 N ALA A 16 ? N ALA A 16 O GLU A 30 ? O GLU A 30 AB 2 3 O ILE A 35 ? O ILE A 35 N PHE A 76 ? N PHE A 76 AB 3 4 N TYR A 81 ? N TYR A 81 O ILE A 65 ? O ILE A 65 # _database_PDB_matrix.entry_id 2CCV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2CCV _atom_sites.fract_transf_matrix[1][1] 0.020640 _atom_sites.fract_transf_matrix[1][2] 0.011916 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023833 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003495 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 1 1 ARG ARG A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 TRP 15 15 15 TRP TRP A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 PRO 23 23 23 PRO PRO A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 PHE 37 37 37 PHE PHE A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 CYS 42 42 42 CYS CYS A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 GLN 60 60 60 GLN GLN A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 PRO 73 73 73 PRO PRO A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 PHE 76 76 76 PHE PHE A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 CYS 80 80 80 CYS CYS A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 TRP 83 83 83 TRP TRP A . n A 1 84 HIS 84 84 84 HIS HIS A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 TYR 89 89 89 TYR TYR A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 MET 91 91 91 MET MET A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 TRP 95 95 95 TRP TRP A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 SER 97 97 97 SER SER A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 ASN 100 100 ? ? ? A . n A 1 101 TYR 101 101 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 1100 1100 ZN ZN A . C 3 A2G 1 1101 1101 A2G A2G A . D 4 GOL 1 1102 1102 GOL GOL A . E 5 ACT 1 1103 1103 ACT ACT A . F 6 NAG 1 1104 1104 NAG NAG A . G 7 HOH 1 2001 2001 HOH HOH A . G 7 HOH 2 2002 2002 HOH HOH A . G 7 HOH 3 2003 2003 HOH HOH A . G 7 HOH 4 2004 2004 HOH HOH A . G 7 HOH 5 2005 2005 HOH HOH A . G 7 HOH 6 2006 2006 HOH HOH A . G 7 HOH 7 2007 2007 HOH HOH A . G 7 HOH 8 2008 2008 HOH HOH A . G 7 HOH 9 2009 2009 HOH HOH A . G 7 HOH 10 2010 2010 HOH HOH A . G 7 HOH 11 2011 2011 HOH HOH A . G 7 HOH 12 2012 2012 HOH HOH A . G 7 HOH 13 2013 2013 HOH HOH A . G 7 HOH 14 2014 2014 HOH HOH A . G 7 HOH 15 2015 2015 HOH HOH A . G 7 HOH 16 2016 2016 HOH HOH A . G 7 HOH 17 2017 2017 HOH HOH A . G 7 HOH 18 2018 2018 HOH HOH A . G 7 HOH 19 2019 2019 HOH HOH A . G 7 HOH 20 2020 2020 HOH HOH A . G 7 HOH 21 2021 2021 HOH HOH A . G 7 HOH 22 2022 2022 HOH HOH A . G 7 HOH 23 2023 2023 HOH HOH A . G 7 HOH 24 2024 2024 HOH HOH A . G 7 HOH 25 2025 2025 HOH HOH A . G 7 HOH 26 2026 2026 HOH HOH A . G 7 HOH 27 2027 2027 HOH HOH A . G 7 HOH 28 2028 2028 HOH HOH A . G 7 HOH 29 2029 2029 HOH HOH A . G 7 HOH 30 2030 2030 HOH HOH A . G 7 HOH 31 2031 2031 HOH HOH A . G 7 HOH 32 2032 2032 HOH HOH A . G 7 HOH 33 2033 2033 HOH HOH A . G 7 HOH 34 2034 2034 HOH HOH A . G 7 HOH 35 2035 2035 HOH HOH A . G 7 HOH 36 2036 2036 HOH HOH A . G 7 HOH 37 2037 2037 HOH HOH A . G 7 HOH 38 2038 2038 HOH HOH A . G 7 HOH 39 2039 2039 HOH HOH A . G 7 HOH 40 2040 2040 HOH HOH A . G 7 HOH 41 2041 2041 HOH HOH A . G 7 HOH 42 2042 2042 HOH HOH A . G 7 HOH 43 2043 2043 HOH HOH A . G 7 HOH 44 2044 2044 HOH HOH A . G 7 HOH 45 2045 2045 HOH HOH A . G 7 HOH 46 2046 2046 HOH HOH A . G 7 HOH 47 2047 2047 HOH HOH A . G 7 HOH 48 2048 2048 HOH HOH A . G 7 HOH 49 2049 2049 HOH HOH A . G 7 HOH 50 2050 2050 HOH HOH A . G 7 HOH 51 2051 2051 HOH HOH A . G 7 HOH 52 2052 2052 HOH HOH A . G 7 HOH 53 2053 2053 HOH HOH A . G 7 HOH 54 2054 2054 HOH HOH A . G 7 HOH 55 2055 2055 HOH HOH A . G 7 HOH 56 2056 2056 HOH HOH A . G 7 HOH 57 2057 2057 HOH HOH A . G 7 HOH 58 2058 2058 HOH HOH A . G 7 HOH 59 2059 2059 HOH HOH A . G 7 HOH 60 2060 2060 HOH HOH A . G 7 HOH 61 2061 2061 HOH HOH A . G 7 HOH 62 2062 2062 HOH HOH A . G 7 HOH 63 2063 2063 HOH HOH A . G 7 HOH 64 2064 2064 HOH HOH A . G 7 HOH 65 2065 2065 HOH HOH A . G 7 HOH 66 2066 2066 HOH HOH A . G 7 HOH 67 2067 2067 HOH HOH A . G 7 HOH 68 2068 2068 HOH HOH A . G 7 HOH 69 2069 2069 HOH HOH A . G 7 HOH 70 2070 2070 HOH HOH A . G 7 HOH 71 2071 2071 HOH HOH A . G 7 HOH 72 2072 2072 HOH HOH A . G 7 HOH 73 2073 2073 HOH HOH A . G 7 HOH 74 2074 2074 HOH HOH A . G 7 HOH 75 2075 2075 HOH HOH A . G 7 HOH 76 2076 2076 HOH HOH A . G 7 HOH 77 2077 2077 HOH HOH A . G 7 HOH 78 2078 2078 HOH HOH A . G 7 HOH 79 2079 2079 HOH HOH A . G 7 HOH 80 2080 2080 HOH HOH A . G 7 HOH 81 2081 2081 HOH HOH A . G 7 HOH 82 2082 2082 HOH HOH A . G 7 HOH 83 2083 2083 HOH HOH A . G 7 HOH 84 2084 2084 HOH HOH A . G 7 HOH 85 2085 2085 HOH HOH A . G 7 HOH 86 2086 2086 HOH HOH A . G 7 HOH 87 2087 2087 HOH HOH A . G 7 HOH 88 2088 2088 HOH HOH A . G 7 HOH 89 2089 2089 HOH HOH A . G 7 HOH 90 2090 2090 HOH HOH A . G 7 HOH 91 2091 2091 HOH HOH A . G 7 HOH 92 2092 2092 HOH HOH A . G 7 HOH 93 2093 2093 HOH HOH A . G 7 HOH 94 2094 2094 HOH HOH A . G 7 HOH 95 2095 2095 HOH HOH A . G 7 HOH 96 2096 2096 HOH HOH A . G 7 HOH 97 2097 2097 HOH HOH A . G 7 HOH 98 2098 2098 HOH HOH A . G 7 HOH 99 2099 2099 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 34 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 34 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 286.1200000000 5 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 286.1200000000 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 286.1200000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A ZN 1100 ? B ZN . 2 1 A HOH 2030 ? G HOH . 3 1 A HOH 2032 ? G HOH . 4 1 A HOH 2072 ? G HOH . 5 1 A HOH 2074 ? G HOH . 6 1 A HOH 2075 ? G HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 84 ? A HIS 84 ? 1_555 ZN ? B ZN . ? A ZN 1100 ? 1_555 NE2 ? A HIS 84 ? A HIS 84 ? 16_545 124.4 ? 2 NE2 ? A HIS 84 ? A HIS 84 ? 1_555 ZN ? B ZN . ? A ZN 1100 ? 1_555 O A E ACT . ? A ACT 1103 ? 1_555 114.5 ? 3 NE2 ? A HIS 84 ? A HIS 84 ? 16_545 ZN ? B ZN . ? A ZN 1100 ? 1_555 O A E ACT . ? A ACT 1103 ? 1_555 113.3 ? 4 NE2 ? A HIS 84 ? A HIS 84 ? 1_555 ZN ? B ZN . ? A ZN 1100 ? 1_555 O A E ACT . ? A ACT 1103 ? 1_555 114.5 ? 5 NE2 ? A HIS 84 ? A HIS 84 ? 16_545 ZN ? B ZN . ? A ZN 1100 ? 1_555 O A E ACT . ? A ACT 1103 ? 1_555 113.3 ? 6 O A E ACT . ? A ACT 1103 ? 1_555 ZN ? B ZN . ? A ZN 1100 ? 1_555 O A E ACT . ? A ACT 1103 ? 1_555 0.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-05-15 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-05-08 5 'Structure model' 1 4 2019-05-22 6 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 6 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Experimental preparation' 6 4 'Structure model' Other 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Refinement description' 9 6 'Structure model' 'Atomic model' 10 6 'Structure model' 'Data collection' 11 6 'Structure model' 'Derived calculations' 12 6 'Structure model' Other 13 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_PDB_rev 2 4 'Structure model' database_PDB_rev_record 3 4 'Structure model' exptl_crystal_grow 4 4 'Structure model' pdbx_database_proc 5 4 'Structure model' pdbx_database_status 6 4 'Structure model' struct_conn 7 5 'Structure model' refine 8 6 'Structure model' atom_site 9 6 'Structure model' atom_site_anisotrop 10 6 'Structure model' chem_comp 11 6 'Structure model' entity 12 6 'Structure model' pdbx_chem_comp_identifier 13 6 'Structure model' pdbx_database_status 14 6 'Structure model' pdbx_entity_nonpoly 15 6 'Structure model' pdbx_struct_conn_angle 16 6 'Structure model' struct_conn 17 6 'Structure model' struct_site 18 6 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.method' 2 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_refine.pdbx_ls_cross_valid_method' 5 6 'Structure model' '_atom_site.auth_atom_id' 6 6 'Structure model' '_atom_site.label_atom_id' 7 6 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 8 6 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 9 6 'Structure model' '_chem_comp.name' 10 6 'Structure model' '_chem_comp.type' 11 6 'Structure model' '_entity.pdbx_description' 12 6 'Structure model' '_pdbx_database_status.status_code_sf' 13 6 'Structure model' '_pdbx_entity_nonpoly.name' 14 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 15 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 16 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 17 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 18 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 19 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 20 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 21 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 22 6 'Structure model' '_pdbx_struct_conn_angle.ptnr2_symmetry' 23 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 24 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 25 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 26 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 27 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 28 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 29 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 30 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 31 6 'Structure model' '_pdbx_struct_conn_angle.value' 32 6 'Structure model' '_struct_conn.pdbx_dist_value' 33 6 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 34 6 'Structure model' '_struct_conn.pdbx_role' 35 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 36 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 37 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 38 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 39 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 40 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 41 6 'Structure model' '_struct_conn.ptnr1_symmetry' 42 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 43 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 44 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 45 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 46 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 47 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' 48 6 'Structure model' '_struct_conn.ptnr2_symmetry' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 HYSS phasing . ? 4 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ; HELIX DETERMINATION METHOD: AUTHOR PROVIDED. ; 700 ; SHEET DETERMINATION METHOD: AUTHOR PROVIDED. ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CG A ASN 34 ? ? C1 A NAG 1104 ? ? 2.10 2 1 OD1 A ASN 34 ? ? C1 A NAG 1104 ? ? 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 25 ? ? CZ A ARG 25 ? ? NH2 A ARG 25 ? ? 113.95 120.30 -6.35 0.50 N 2 1 NE A ARG 29 ? ? CZ A ARG 29 ? ? NH1 A ARG 29 ? ? 124.73 120.30 4.43 0.50 N 3 1 CA A CYS 42 ? ? CB A CYS 42 ? ? SG A CYS 42 ? ? 121.12 114.20 6.92 1.10 N 4 1 CB A TYR 81 ? ? CG A TYR 81 ? ? CD2 A TYR 81 ? ? 124.61 121.00 3.61 0.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 39 ? ? 142.48 103.78 2 1 HIS A 84 ? ? 51.08 -136.64 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 99 ? CG ? A GLU 99 CG 2 1 Y 1 A GLU 99 ? CD ? A GLU 99 CD 3 1 Y 1 A GLU 99 ? OE1 ? A GLU 99 OE1 4 1 Y 1 A GLU 99 ? OE2 ? A GLU 99 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASN 100 ? A ASN 100 2 1 Y 1 A TYR 101 ? A TYR 101 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A2G 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpNAca A2G 'COMMON NAME' GMML 1.0 N-acetyl-a-D-galactopyranosamine A2G 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GalpNAc A2G 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GalNAc NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 2-acetamido-2-deoxy-alpha-D-galactopyranose A2G 4 GLYCEROL GOL 5 'ACETATE ION' ACT 6 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 7 water HOH #