HEADER NUCLEIC ACID 19-JAN-06 2CD6 TITLE REFINEMENT OF RNASE P P4 STEMLOOP STRUCTURE USING RESIDUAL TITLE 2 DIPOLAR COUPLING DATA, C70U MUTANT COBALT(III) HEXAMMINE TITLE 3 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(*GP*GP*AP*AP*GP*UP*UP*CP*CP*GP COMPND 3 *UP*CP*UP*UP*CP*GP*GP*AP*CP*CP*GP*GP*CP*UP*UP*CP*C)-3'; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: RNASE P RIBOZYME, P4 DOMAIN MUTANT; COMPND 6 OTHER_DETAILS: MUTATION CYTOSINE 70 URACIL SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562 KEYWDS C70U MUTANT, COBALT (III HEXAMMINE COMPLEX, METAL BINDING KEYWDS 2 SITE, METAL COMPLEX, P4 STEM, RIBONUCLEASE P, RIBONUCLEIC KEYWDS 3 ACID, RIBOZYME, TRANSFER RNA PROCESSING, NUCLEIC ACID EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR M.SCHMITZ REVDAT 4 27-JAN-16 2CD6 1 REMARK VERSN REVDAT 3 16-JUN-09 2CD6 1 JRNL REMARK REVDAT 2 24-FEB-09 2CD6 1 VERSN REVDAT 1 01-MAY-07 2CD6 0 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.SCHMITZ,I.TINOCO JUNIOR REMARK 1 TITL SOLUTION STRUCTURE AND METAL-ION BINDING OF THE P4 REMARK 1 TITL 2 ELEMENT FROM BACTERIAL RNASE P RNA REMARK 1 REF RNA V. 6 1212 2000 REMARK 1 REFN ISSN 1355-8382 REMARK 1 PMID 10999599 REMARK 1 DOI 10.1017/S1355838200000881 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.843 NIH REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DETAILS OF THE REFINEMENT PROCEDURE REMARK 3 AGAINST RESIDUAL DIPOLAR COUPLINGS ARE GIVEN IN THE PRIMARY REMARK 3 CITATION ABOVE REMARK 4 REMARK 4 2CD6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JAN-06. REMARK 100 THE PDBE ID CODE IS EBI-27330. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288.0 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 MM REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 90% WATER/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1H-15N HSCQ REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.843 NIH REMARK 210 METHOD USED : RESTRAINED MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 9 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING CONSTRAINTS FROM REMARK 210 HOMONUCLEAR NMR EXPERIMENTS AS DESCRIBED IN ENTRY 17F9, REMARK 210 AND ADDITIONAL RESIDUAL DIPOLAR COUPLINGS FOR IMINO REMARK 210 RESONANCES AQCUIRED WITH AND WITHOUT 30 MG PER ML PF1 REMARK 210 PHAGE PRESENT IN SOLUTION REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NCO A1028 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 NCO A1028 N2 REMARK 620 2 NCO A1028 N6 90.1 REMARK 620 3 NCO A1028 N1 180.0 89.9 REMARK 620 4 NCO A1028 N3 89.8 90.1 90.1 REMARK 620 5 NCO A1028 N4 90.1 89.9 89.9 180.0 REMARK 620 6 NCO A1028 N5 89.8 180.0 90.1 89.8 90.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO A1028 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CD1 RELATED DB: PDB REMARK 900 REFINEMENT OF P4 STEMLOOP STRUCTURE USING REMARK 900 RESIDUAL DIPOLAR COUPLING DATA REMARK 900 RELATED ID: 2CD3 RELATED DB: PDB REMARK 900 REFINEMENT OF RNASE P P4 STEMLOOP STRUCTURE REMARK 900 USING RESIDUAL DIPOLAR COUPLING DATA - C70U REMARK 900 MUTANT REMARK 900 RELATED ID: 2CD5 RELATED DB: PDB REMARK 900 REFINEMENT OF RNASE P P4 STEMLOOP STRUCTURE REMARK 900 USING RESIDUAL DIPOLAR COUPLINGS - COBALT( REMARK 900 III) HEXAMMINE COMPLEX STRUCTURE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE CORRESPONDS TO NUCLEOTIDES 66 TO 73, AND REMARK 999 354 TO 360 OF THE E. COLI RNASE P RNA, WITH TWO G:C PAIRS REMARK 999 ADDED ON THE 5' SIDE OF THE HELIX, AND ONE U:A PAIR, REMARK 999 ONE C:G PAIR AND A UUCG LOOP ADDED ON THE OTHER REMARK 999 SIDE. IN THE PDB ENTRY,NUCLEOTIDES 3-10 CORRESPOND TO REMARK 999 66-73 IN E. COLI RNASE P RNA, AND NUCLEOTIDES 19-25 REMARK 999 CORRESPOND TO 334-360. DBREF 2CD6 A 1 27 PDB 2CD6 2CD6 1 27 SEQRES 1 A 27 G G A A G U U C G G U C U SEQRES 2 A 27 U C G G A C C G G C U U C SEQRES 3 A 27 C HET NCO A1028 21 HETNAM NCO COBALT HEXAMMINE(III) FORMUL 2 NCO CO H18 N6 3+ SITE 1 AC1 5 G A 5 U A 6 C A 20 G A 21 SITE 2 AC1 5 G A 22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000