HEADER OXIDOREDUCTASE 23-JAN-06 2CDA TITLE SULFOLOBUS SOLFATARICUS GLUCOSE DEHYDROGENASE 1 IN COMPLEX WITH NADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLUCOSE 1-DEHYDROGENASE, DHG-1; COMPND 5 EC: 1.1.1.47; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: JM109; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PREC7 KEYWDS OXIDOREDUCTASE, GLUCOSE DEHYDROGENASE, MEDIUM CHAIN DEHYDROGENASE KEYWDS 2 FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR C.C.MILBURN,H.J.LAMBLE,A.THEODOSSIS,D.W.HOUGH,M.J.DANSON,G.L.TAYLOR REVDAT 6 13-NOV-24 2CDA 1 REMARK REVDAT 5 13-DEC-23 2CDA 1 LINK REVDAT 4 10-APR-19 2CDA 1 SOURCE REVDAT 3 24-FEB-09 2CDA 1 VERSN REVDAT 2 24-MAY-06 2CDA 1 JRNL REVDAT 1 22-MAR-06 2CDA 0 JRNL AUTH C.C.MILBURN,H.J.LAMBLE,A.THEODOSSIS,S.D.BULL,D.W.HOUGH, JRNL AUTH 2 M.J.DANSON,G.L.TAYLOR JRNL TITL THE STRUCTURAL BASIS OF SUBSTRATE PROMISCUITY IN GLUCOSE JRNL TITL 2 DEHYDROGENASE FROM THE HYPERTHERMOPHILIC ARCHAEON SULFOLOBUS JRNL TITL 3 SOLFATARICUS. JRNL REF J.BIOL.CHEM. V. 281 14796 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16556607 JRNL DOI 10.1074/JBC.M601334200 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 138.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 38076 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2819 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5657 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 156 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : 1.60000 REMARK 3 B33 (A**2) : -1.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.292 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.227 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.894 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5869 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7951 ; 1.817 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 715 ; 7.531 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 246 ;40.148 ;24.715 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1066 ;16.962 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;20.855 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 905 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4286 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2610 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3930 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 311 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 105 ; 0.201 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.219 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3680 ; 1.034 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5758 ; 1.688 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2541 ; 2.512 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2193 ; 3.782 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. DISORDERED LOOP REGION IS DELETED FROM THE COORDINATES REMARK 4 REMARK 4 2CDA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1290027407. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38690 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 51.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2CD9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8 % PEG 8000, 0.1 MM TRIS (PH 8.0), REMARK 280 4.5 % PROPAN-2-OL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 34.31000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.14800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.31000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.14800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 68.62000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 51 REMARK 465 LEU A 52 REMARK 465 SER A 53 REMARK 465 THR A 54 REMARK 465 LEU A 55 REMARK 465 PRO A 56 REMARK 465 THR B 51 REMARK 465 LEU B 52 REMARK 465 SER B 53 REMARK 465 THR B 54 REMARK 465 LEU B 55 REMARK 465 PRO B 56 REMARK 465 LYS B 57 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2027 O HOH A 2073 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 8 C - N - CA ANGL. DEV. = 13.0 DEGREES REMARK 500 PRO A 9 C - N - CA ANGL. DEV. = -13.3 DEGREES REMARK 500 ASP A 176 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 83 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 8 -6.26 -20.22 REMARK 500 TYR A 76 -151.71 -120.21 REMARK 500 GLN A 81 121.17 -33.78 REMARK 500 ILE A 117 -46.56 -141.59 REMARK 500 HIS A 118 114.52 -170.89 REMARK 500 LYS A 119 -4.67 83.79 REMARK 500 THR A 178 -169.36 -105.84 REMARK 500 THR A 189 -162.57 -112.72 REMARK 500 ARG A 213 166.67 174.35 REMARK 500 ALA A 256 -150.55 -79.93 REMARK 500 ASN A 307 119.40 70.27 REMARK 500 HIS B 77 -109.82 42.41 REMARK 500 GLU B 111 30.03 -95.27 REMARK 500 ILE B 117 -51.20 -135.27 REMARK 500 MET B 120 110.93 -166.90 REMARK 500 PRO B 132 -36.00 -37.90 REMARK 500 THR B 189 -143.33 -99.42 REMARK 500 ARG B 213 176.39 172.92 REMARK 500 ASN B 307 122.93 75.66 REMARK 500 GLN B 309 -166.09 -109.86 REMARK 500 ILE B 359 -69.53 -94.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 255 ALA B 256 -149.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1368 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 39 SG REMARK 620 2 HIS A 66 NE2 103.3 REMARK 620 3 GLU A 67 OE2 115.6 129.3 REMARK 620 4 HOH A2075 O 138.2 100.3 71.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1369 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 93 SG REMARK 620 2 CYS A 96 SG 111.1 REMARK 620 3 CYS A 99 SG 113.2 98.3 REMARK 620 4 CYS A 107 SG 110.0 121.1 102.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1368 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 39 SG REMARK 620 2 HIS B 66 NE2 91.2 REMARK 620 3 GLU B 67 OE2 93.3 126.7 REMARK 620 4 HOH B2081 O 121.9 117.4 104.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1369 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 93 SG REMARK 620 2 CYS B 96 SG 107.1 REMARK 620 3 CYS B 99 SG 113.8 103.0 REMARK 620 4 CYS B 107 SG 110.8 115.8 106.3 REMARK 620 N 1 2 3 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1368 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1368 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A1367 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B1367 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CD9 RELATED DB: PDB REMARK 900 SULFOLOBUS SOLFATARICUS GLUCOSE DEHYDROGENASE 1 - APO FORM REMARK 900 RELATED ID: 2CDB RELATED DB: PDB REMARK 900 SULFOLOBUS SOLFATARICUS GLUCOSE DEHYDROGENASE 1 IN COMPLEX WITH REMARK 900 NADP AND GLUCOSE REMARK 900 RELATED ID: 2CDC RELATED DB: PDB REMARK 900 SULFOLOBUS SOLFATARICUS GLUCOSE DEHYDROGENASE 1 IN COMPLEX WITH REMARK 900 NADP AND XYLOSE DBREF 2CDA A 1 366 UNP O93715 O93715_SULSO 1 366 DBREF 2CDA B 1 366 UNP O93715 O93715_SULSO 1 366 SEQRES 1 A 366 MET LYS ALA ILE ILE VAL LYS PRO PRO ASN ALA GLY VAL SEQRES 2 A 366 GLN VAL LYS ASP VAL ASP GLU LYS LYS LEU ASP SER TYR SEQRES 3 A 366 GLY LYS ILE LYS ILE ARG THR ILE TYR ASN GLY ILE CYS SEQRES 4 A 366 GLY THR ASP ARG GLU ILE VAL ASN GLY LYS LEU THR LEU SEQRES 5 A 366 SER THR LEU PRO LYS GLY LYS ASP PHE LEU VAL LEU GLY SEQRES 6 A 366 HIS GLU ALA ILE GLY VAL VAL GLU GLU SER TYR HIS GLY SEQRES 7 A 366 PHE SER GLN GLY ASP LEU VAL MET PRO VAL ASN ARG ARG SEQRES 8 A 366 GLY CYS GLY ILE CYS ARG ASN CYS LEU VAL GLY ARG PRO SEQRES 9 A 366 ASP PHE CYS GLU THR GLY GLU PHE GLY GLU ALA GLY ILE SEQRES 10 A 366 HIS LYS MET ASP GLY PHE MET ARG GLU TRP TRP TYR ASP SEQRES 11 A 366 ASP PRO LYS TYR LEU VAL LYS ILE PRO LYS SER ILE GLU SEQRES 12 A 366 ASP ILE GLY ILE LEU ALA GLN PRO LEU ALA ASP ILE GLU SEQRES 13 A 366 LYS SER ILE GLU GLU ILE LEU GLU VAL GLN LYS ARG VAL SEQRES 14 A 366 PRO VAL TRP THR CYS ASP ASP GLY THR LEU ASN CYS ARG SEQRES 15 A 366 LYS VAL LEU VAL VAL GLY THR GLY PRO ILE GLY VAL LEU SEQRES 16 A 366 PHE THR LEU LEU PHE ARG THR TYR GLY LEU GLU VAL TRP SEQRES 17 A 366 MET ALA ASN ARG ARG GLU PRO THR GLU VAL GLU GLN THR SEQRES 18 A 366 VAL ILE GLU GLU THR LYS THR ASN TYR TYR ASN SER SER SEQRES 19 A 366 ASN GLY TYR ASP LYS LEU LYS ASP SER VAL GLY LYS PHE SEQRES 20 A 366 ASP VAL ILE ILE ASP ALA THR GLY ALA ASP VAL ASN ILE SEQRES 21 A 366 LEU GLY ASN VAL ILE PRO LEU LEU GLY ARG ASN GLY VAL SEQRES 22 A 366 LEU GLY LEU PHE GLY PHE SER THR SER GLY SER VAL PRO SEQRES 23 A 366 LEU ASP TYR LYS THR LEU GLN GLU ILE VAL HIS THR ASN SEQRES 24 A 366 LYS THR ILE ILE GLY LEU VAL ASN GLY GLN LYS PRO HIS SEQRES 25 A 366 PHE GLN GLN ALA VAL VAL HIS LEU ALA SER TRP LYS THR SEQRES 26 A 366 LEU TYR PRO LYS ALA ALA LYS MET LEU ILE THR LYS THR SEQRES 27 A 366 VAL SER ILE ASN ASP GLU LYS GLU LEU LEU LYS VAL LEU SEQRES 28 A 366 ARG GLU LYS GLU HIS GLY GLU ILE LYS ILE ARG ILE LEU SEQRES 29 A 366 TRP GLU SEQRES 1 B 366 MET LYS ALA ILE ILE VAL LYS PRO PRO ASN ALA GLY VAL SEQRES 2 B 366 GLN VAL LYS ASP VAL ASP GLU LYS LYS LEU ASP SER TYR SEQRES 3 B 366 GLY LYS ILE LYS ILE ARG THR ILE TYR ASN GLY ILE CYS SEQRES 4 B 366 GLY THR ASP ARG GLU ILE VAL ASN GLY LYS LEU THR LEU SEQRES 5 B 366 SER THR LEU PRO LYS GLY LYS ASP PHE LEU VAL LEU GLY SEQRES 6 B 366 HIS GLU ALA ILE GLY VAL VAL GLU GLU SER TYR HIS GLY SEQRES 7 B 366 PHE SER GLN GLY ASP LEU VAL MET PRO VAL ASN ARG ARG SEQRES 8 B 366 GLY CYS GLY ILE CYS ARG ASN CYS LEU VAL GLY ARG PRO SEQRES 9 B 366 ASP PHE CYS GLU THR GLY GLU PHE GLY GLU ALA GLY ILE SEQRES 10 B 366 HIS LYS MET ASP GLY PHE MET ARG GLU TRP TRP TYR ASP SEQRES 11 B 366 ASP PRO LYS TYR LEU VAL LYS ILE PRO LYS SER ILE GLU SEQRES 12 B 366 ASP ILE GLY ILE LEU ALA GLN PRO LEU ALA ASP ILE GLU SEQRES 13 B 366 LYS SER ILE GLU GLU ILE LEU GLU VAL GLN LYS ARG VAL SEQRES 14 B 366 PRO VAL TRP THR CYS ASP ASP GLY THR LEU ASN CYS ARG SEQRES 15 B 366 LYS VAL LEU VAL VAL GLY THR GLY PRO ILE GLY VAL LEU SEQRES 16 B 366 PHE THR LEU LEU PHE ARG THR TYR GLY LEU GLU VAL TRP SEQRES 17 B 366 MET ALA ASN ARG ARG GLU PRO THR GLU VAL GLU GLN THR SEQRES 18 B 366 VAL ILE GLU GLU THR LYS THR ASN TYR TYR ASN SER SER SEQRES 19 B 366 ASN GLY TYR ASP LYS LEU LYS ASP SER VAL GLY LYS PHE SEQRES 20 B 366 ASP VAL ILE ILE ASP ALA THR GLY ALA ASP VAL ASN ILE SEQRES 21 B 366 LEU GLY ASN VAL ILE PRO LEU LEU GLY ARG ASN GLY VAL SEQRES 22 B 366 LEU GLY LEU PHE GLY PHE SER THR SER GLY SER VAL PRO SEQRES 23 B 366 LEU ASP TYR LYS THR LEU GLN GLU ILE VAL HIS THR ASN SEQRES 24 B 366 LYS THR ILE ILE GLY LEU VAL ASN GLY GLN LYS PRO HIS SEQRES 25 B 366 PHE GLN GLN ALA VAL VAL HIS LEU ALA SER TRP LYS THR SEQRES 26 B 366 LEU TYR PRO LYS ALA ALA LYS MET LEU ILE THR LYS THR SEQRES 27 B 366 VAL SER ILE ASN ASP GLU LYS GLU LEU LEU LYS VAL LEU SEQRES 28 B 366 ARG GLU LYS GLU HIS GLY GLU ILE LYS ILE ARG ILE LEU SEQRES 29 B 366 TRP GLU HET NAP A1367 48 HET ZN A1368 1 HET ZN A1369 1 HET NAP B1367 48 HET ZN B1368 1 HET ZN B1369 1 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM ZN ZINC ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 ZN 4(ZN 2+) FORMUL 9 HOH *156(H2 O) HELIX 1 1 ASP A 19 LEU A 23 5 5 HELIX 2 2 CYS A 39 ASN A 47 1 9 HELIX 3 3 CYS A 96 VAL A 101 1 6 HELIX 4 4 ARG A 103 CYS A 107 5 5 HELIX 5 5 ASP A 131 LYS A 133 5 3 HELIX 6 6 PRO A 139 GLU A 143 5 5 HELIX 7 7 ILE A 145 ILE A 147 5 3 HELIX 8 8 LEU A 148 GLN A 166 1 19 HELIX 9 9 LYS A 167 VAL A 169 5 3 HELIX 10 10 THR A 189 TYR A 203 1 15 HELIX 11 11 THR A 216 LYS A 227 1 12 HELIX 12 12 TYR A 237 VAL A 244 1 8 HELIX 13 13 VAL A 258 ILE A 265 1 8 HELIX 14 14 ASP A 288 THR A 298 1 11 HELIX 15 15 GLN A 309 TYR A 327 1 19 HELIX 16 16 TYR A 327 LYS A 332 1 6 HELIX 17 17 ASP A 343 GLU A 353 1 11 HELIX 18 18 CYS B 39 ASN B 47 1 9 HELIX 19 19 CYS B 96 VAL B 101 1 6 HELIX 20 20 ARG B 103 CYS B 107 5 5 HELIX 21 21 ASP B 131 LYS B 133 5 3 HELIX 22 22 PRO B 139 GLU B 143 5 5 HELIX 23 23 ILE B 145 ILE B 147 5 3 HELIX 24 24 LEU B 148 GLN B 166 1 19 HELIX 25 25 LYS B 167 VAL B 169 5 3 HELIX 26 26 THR B 189 TYR B 203 1 15 HELIX 27 27 THR B 216 LYS B 227 1 12 HELIX 28 28 TYR B 237 GLY B 245 1 9 HELIX 29 29 VAL B 258 ILE B 265 1 8 HELIX 30 30 ASP B 288 THR B 298 1 11 HELIX 31 31 GLN B 309 TYR B 327 1 19 HELIX 32 32 TYR B 327 LEU B 334 1 8 HELIX 33 33 ASP B 343 GLU B 353 1 11 SHEET 1 AA 3 ASN A 10 ASP A 17 0 SHEET 2 AA 3 LYS A 2 LYS A 7 -1 O ALA A 3 N LYS A 16 SHEET 3 AA 3 LEU A 62 VAL A 63 -1 O LEU A 62 N VAL A 6 SHEET 1 AB 5 TRP A 127 ASP A 130 0 SHEET 2 AB 5 ILE A 29 ILE A 38 -1 O ILE A 29 N ASP A 130 SHEET 3 AB 5 GLU A 67 VAL A 72 -1 O GLU A 67 N GLY A 37 SHEET 4 AB 5 LEU A 84 PRO A 87 -1 O VAL A 85 N GLY A 70 SHEET 5 AB 5 LEU A 135 ILE A 138 -1 O VAL A 136 N MET A 86 SHEET 1 AC 4 TRP A 127 ASP A 130 0 SHEET 2 AC 4 ILE A 29 ILE A 38 -1 O ILE A 29 N ASP A 130 SHEET 3 AC 4 ILE A 361 LEU A 364 -1 O ILE A 361 N ILE A 38 SHEET 4 AC 4 LYS A 337 SER A 340 1 O LYS A 337 N ARG A 362 SHEET 1 AD 2 ARG A 90 ARG A 91 0 SHEET 2 AD 2 GLY A 113 GLU A 114 -1 O GLY A 113 N ARG A 91 SHEET 1 AE 6 ASN A 229 ASN A 232 0 SHEET 2 AE 6 GLU A 206 ASN A 211 1 O VAL A 207 N ASN A 229 SHEET 3 AE 6 LYS A 183 VAL A 187 1 O VAL A 184 N TRP A 208 SHEET 4 AE 6 PHE A 247 ASP A 252 1 N ASP A 248 O LYS A 183 SHEET 5 AE 6 LEU A 268 LEU A 276 1 N GLY A 269 O PHE A 247 SHEET 6 AE 6 THR A 301 GLY A 304 1 O THR A 301 N LEU A 274 SHEET 1 BA 3 VAL B 13 ASP B 17 0 SHEET 2 BA 3 LYS B 2 VAL B 6 -1 O ALA B 3 N LYS B 16 SHEET 3 BA 3 LEU B 62 VAL B 63 -1 O LEU B 62 N VAL B 6 SHEET 1 BB 5 TRP B 127 ASP B 130 0 SHEET 2 BB 5 ILE B 29 ILE B 38 -1 O ILE B 29 N ASP B 130 SHEET 3 BB 5 ALA B 68 VAL B 72 -1 O ILE B 69 N ILE B 34 SHEET 4 BB 5 LEU B 84 PRO B 87 -1 O VAL B 85 N GLY B 70 SHEET 5 BB 5 LEU B 135 ILE B 138 -1 O VAL B 136 N MET B 86 SHEET 1 BC 4 TRP B 127 ASP B 130 0 SHEET 2 BC 4 ILE B 29 ILE B 38 -1 O ILE B 29 N ASP B 130 SHEET 3 BC 4 LYS B 360 LEU B 364 -1 O ILE B 361 N ILE B 38 SHEET 4 BC 4 ILE B 335 SER B 340 1 N THR B 336 O LYS B 360 SHEET 1 BD 2 ARG B 90 ARG B 91 0 SHEET 2 BD 2 GLY B 113 GLU B 114 -1 O GLY B 113 N ARG B 91 SHEET 1 BE 6 ASN B 229 ASN B 232 0 SHEET 2 BE 6 GLU B 206 ASN B 211 1 O VAL B 207 N ASN B 229 SHEET 3 BE 6 LYS B 183 VAL B 187 1 O VAL B 184 N TRP B 208 SHEET 4 BE 6 PHE B 247 ASP B 252 1 N ASP B 248 O LYS B 183 SHEET 5 BE 6 LEU B 268 LEU B 276 1 N GLY B 269 O PHE B 247 SHEET 6 BE 6 THR B 301 GLY B 304 1 O THR B 301 N LEU B 274 SSBOND 1 CYS A 174 CYS A 181 1555 1555 2.02 SSBOND 2 CYS B 174 CYS B 181 1555 1555 2.03 LINK SG CYS A 39 ZN ZN A1368 1555 1555 2.35 LINK NE2 HIS A 66 ZN ZN A1368 1555 1555 2.17 LINK OE2 GLU A 67 ZN ZN A1368 1555 1555 2.19 LINK SG CYS A 93 ZN ZN A1369 1555 1555 2.47 LINK SG CYS A 96 ZN ZN A1369 1555 1555 2.45 LINK SG CYS A 99 ZN ZN A1369 1555 1555 2.33 LINK SG CYS A 107 ZN ZN A1369 1555 1555 2.33 LINK ZN ZN A1368 O HOH A2075 1555 1555 1.75 LINK SG CYS B 39 ZN ZN B1368 1555 1555 2.51 LINK NE2 HIS B 66 ZN ZN B1368 1555 1555 2.23 LINK OE2 GLU B 67 ZN ZN B1368 1555 1555 1.92 LINK SG CYS B 93 ZN ZN B1369 1555 1555 2.41 LINK SG CYS B 96 ZN ZN B1369 1555 1555 2.46 LINK SG CYS B 99 ZN ZN B1369 1555 1555 2.29 LINK SG CYS B 107 ZN ZN B1369 1555 1555 2.29 LINK ZN ZN B1368 O HOH B2081 1555 1555 1.72 CISPEP 1 PRO B 8 PRO B 9 0 -5.25 SITE 1 AC1 5 CYS A 39 HIS A 66 GLU A 67 GLN A 150 SITE 2 AC1 5 HOH A2075 SITE 1 AC2 4 CYS A 93 CYS A 96 CYS A 99 CYS A 107 SITE 1 AC3 5 CYS B 39 HIS B 66 GLU B 67 GLN B 150 SITE 2 AC3 5 HOH B2081 SITE 1 AC4 4 CYS B 93 CYS B 96 CYS B 99 CYS B 107 SITE 1 AC5 25 ASP A 154 VAL A 187 GLY A 188 THR A 189 SITE 2 AC5 25 PRO A 191 ILE A 192 ASN A 211 ARG A 212 SITE 3 AC5 25 ARG A 213 ALA A 253 THR A 254 GLY A 255 SITE 4 AC5 25 ALA A 256 PHE A 277 GLY A 278 PHE A 279 SITE 5 AC5 25 LEU A 305 VAL A 306 ASN A 307 LYS A 354 SITE 6 AC5 25 HOH A2043 HOH A2071 HOH A2072 HOH A2073 SITE 7 AC5 25 HOH A2074 SITE 1 AC6 25 ASP B 154 VAL B 187 GLY B 188 THR B 189 SITE 2 AC6 25 GLY B 190 PRO B 191 ILE B 192 ASN B 211 SITE 3 AC6 25 ARG B 212 ARG B 213 ALA B 253 THR B 254 SITE 4 AC6 25 GLY B 255 ILE B 260 PHE B 277 GLY B 278 SITE 5 AC6 25 PHE B 279 LEU B 305 VAL B 306 ASN B 307 SITE 6 AC6 25 LYS B 354 HIS B 356 HOH B2076 HOH B2077 SITE 7 AC6 25 HOH B2078 CRYST1 68.620 92.296 138.264 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014573 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010835 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007233 0.00000