HEADER OXIDOREDUCTASE 03-FEB-06 2CE4 TITLE MANGANESE SUPEROXIDE DISMUTASE (MN-SOD) FROM DEINOCOCCUS RADIODURANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [MN]; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MNSOD; COMPND 5 EC: 1.15.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 243230; SOURCE 4 STRAIN: R1; SOURCE 5 ATCC: 13939; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: GATEWAY PDEST17 KEYWDS MANGANESE SUPEROXIDE DISMUTASE, DEINOCOCCUS RADIODURANS, RADIATION KEYWDS 2 RESISTANCE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.DENNIS,E.MICOSSI,J.MCCARTHY,E.MOE,E.GORDON,G.LEONARD,S.MCSWEENEY REVDAT 5 13-DEC-23 2CE4 1 LINK REVDAT 4 28-FEB-18 2CE4 1 SOURCE AUTHOR JRNL REVDAT 3 24-FEB-09 2CE4 1 VERSN REVDAT 2 05-APR-06 2CE4 1 JRNL REVDAT 1 13-FEB-06 2CE4 0 JRNL AUTH R.J.DENNIS,E.MICOSSI,J.MCCARTHY,E.MOE,E.J.GORDON, JRNL AUTH 2 S.KOZIELSKI-STUHRMANN,G.A.LEONARD,S.MCSWEENEY JRNL TITL STRUCTURE OF THE MANGANESE SUPEROXIDE DISMUTASE FROM JRNL TITL 2 DEINOCOCCUS RADIODURANS IN TWO CRYSTAL FORMS. JRNL REF ACTA CRYSTALLOGR. SECT. F V. 62 325 2006 JRNL REF 2 STRUCT. BIOL. CRYST. COMMUN. JRNL REFN ESSN 1744-3091 JRNL PMID 16582477 JRNL DOI 10.1107/S1744309106008402 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 996 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1391 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3207 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 365 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.58000 REMARK 3 B22 (A**2) : 2.34000 REMARK 3 B33 (A**2) : -2.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.28000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.312 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.227 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.144 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3305 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2816 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4497 ; 1.308 ; 1.908 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6539 ; 0.846 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 404 ; 6.007 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 467 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3781 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 690 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 718 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3308 ; 0.233 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1765 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 269 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.128 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 23 ; 0.267 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.214 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2028 ; 0.642 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3225 ; 1.160 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1277 ; 1.624 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1272 ; 2.628 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 45 6 REMARK 3 1 B 1 B 45 6 REMARK 3 2 A 46 A 90 6 REMARK 3 2 B 46 B 90 6 REMARK 3 3 A 97 A 210 6 REMARK 3 3 B 97 B 210 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 2942 ; 0.38 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 2942 ; 2.46 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ELECTRON DENSITY FOR RESIDUES A90-A95 AND B91-B95 IS REMARK 3 POOR. THEY ARE NOT INCLUDED IN THE MODEL. REMARK 4 REMARK 4 2CE4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1290027551. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20567 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 29.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.16000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1VEW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM TRIS-HCL PH 8.5, 20MM MNCL2, 30% REMARK 280 PEG 4000, PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.60500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 SER A -20 REMARK 465 TYR A -19 REMARK 465 TYR A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 LEU A -11 REMARK 465 GLU A -10 REMARK 465 SER A -9 REMARK 465 THR A -8 REMARK 465 SER A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 LYS A -4 REMARK 465 LYS A -3 REMARK 465 ALA A -2 REMARK 465 LEU A -1 REMARK 465 GLY A 44 REMARK 465 GLY A 90 REMARK 465 GLN A 91 REMARK 465 GLY A 92 REMARK 465 GLN A 93 REMARK 465 ASN A 94 REMARK 465 GLY A 95 REMARK 465 MET B -21 REMARK 465 SER B -20 REMARK 465 TYR B -19 REMARK 465 TYR B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 LEU B -11 REMARK 465 GLU B -10 REMARK 465 SER B -9 REMARK 465 THR B -8 REMARK 465 SER B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 LYS B -4 REMARK 465 LYS B -3 REMARK 465 ALA B -2 REMARK 465 GLN B 91 REMARK 465 GLY B 92 REMARK 465 GLN B 93 REMARK 465 ASN B 94 REMARK 465 GLY B 95 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 40 CD CE NZ REMARK 470 THR A 45 O REMARK 470 ALA A 64 CB REMARK 470 LEU A 104 CD1 CD2 REMARK 470 LYS A 126 CE NZ REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 LEU B -1 CD1 CD2 REMARK 470 LYS B 40 CD CE NZ REMARK 470 GLU B 43 CD OE1 OE2 REMARK 470 LYS B 66 CE NZ REMARK 470 LYS B 120 CE NZ REMARK 470 LYS B 142 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 61 -46.25 168.61 REMARK 500 PRO A 63 152.78 -47.12 REMARK 500 ASN A 150 -128.03 57.51 REMARK 500 GLN A 183 -128.70 43.36 REMARK 500 SER B 109 -72.01 -65.41 REMARK 500 ASN B 150 -125.57 54.76 REMARK 500 TYR B 178 -5.25 -146.54 REMARK 500 GLN B 183 -125.37 50.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2078 DISTANCE = 5.82 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1211 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 26 NE2 REMARK 620 2 HIS A 80 NE2 92.9 REMARK 620 3 ASP A 172 OD2 86.2 110.0 REMARK 620 4 HIS A 176 NE2 94.7 139.1 110.6 REMARK 620 5 HOH A2198 O 167.7 94.3 82.0 86.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1211 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 26 NE2 REMARK 620 2 HIS B 80 NE2 86.9 REMARK 620 3 ASP B 172 OD2 85.1 105.2 REMARK 620 4 HIS B 176 NE2 93.8 139.4 115.3 REMARK 620 5 HOH B2167 O 168.9 96.4 83.8 90.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A1211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B1211 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Y67 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MANGANESE SUPEROXIDE DISMUTASE FROMDEINOCOCCUS REMARK 900 RADIODURANS REMARK 900 RELATED ID: 2CDY RELATED DB: PDB REMARK 900 MANGANESE SUPEROXIDE DISMUTASE (MN-SOD) FROM DEINOCOCCUS RADIODURANS REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE CRYSTALLISED CONTAINS AN N-TERMINAL REMARK 999 PURIFICATION TAG. WHERE RESIDUES FROM THIS ARE SEEN IN THE REMARK 999 CRYSTAL THE NUMBERING IS -1, -2 ETC... DBREF 2CE4 A -21 -1 PDB 2CE4 2CE4 -21 -1 DBREF 2CE4 A 1 210 UNP Q9RUV2 SODM_DEIRA 1 210 DBREF 2CE4 B -21 -1 PDB 2CE4 2CE4 -21 -1 DBREF 2CE4 B 1 210 UNP Q9RUV2 SODM_DEIRA 1 210 SEQRES 1 A 231 MET SER TYR TYR HIS HIS HIS HIS HIS HIS LEU GLU SER SEQRES 2 A 231 THR SER LEU TYR LYS LYS ALA LEU ALA TYR THR LEU PRO SEQRES 3 A 231 GLN LEU PRO TYR ALA TYR ASP ALA LEU GLU PRO HIS ILE SEQRES 4 A 231 ASP ALA ARG THR MET GLU ILE HIS HIS THR LYS HIS HIS SEQRES 5 A 231 GLN THR TYR VAL ASP ASN ALA ASN LYS ALA LEU GLU GLY SEQRES 6 A 231 THR GLU PHE ALA ASP LEU PRO VAL GLU GLN LEU ILE GLN SEQRES 7 A 231 GLN LEU ASP ARG VAL PRO ALA ASP LYS LYS GLY ALA LEU SEQRES 8 A 231 ARG ASN ASN ALA GLY GLY HIS ALA ASN HIS SER MET PHE SEQRES 9 A 231 TRP GLN ILE MET GLY GLN GLY GLN GLY GLN ASN GLY ALA SEQRES 10 A 231 ASN GLN PRO SER GLY GLU LEU LEU ASP ALA ILE ASN SER SEQRES 11 A 231 ALA PHE GLY SER PHE ASP ALA PHE LYS GLN LYS PHE GLU SEQRES 12 A 231 ASP ALA ALA LYS THR ARG PHE GLY SER GLY TRP ALA TRP SEQRES 13 A 231 LEU VAL VAL LYS ASP GLY LYS LEU ASP VAL VAL SER THR SEQRES 14 A 231 ALA ASN GLN ASP ASN PRO LEU MET GLY GLU ALA ILE ALA SEQRES 15 A 231 GLY VAL SER GLY THR PRO ILE LEU GLY VAL ASP VAL TRP SEQRES 16 A 231 GLU HIS ALA TYR TYR LEU ASN TYR GLN ASN ARG ARG PRO SEQRES 17 A 231 ASP TYR LEU ALA ALA PHE TRP ASN VAL VAL ASN TRP ASP SEQRES 18 A 231 GLU VAL SER LYS ARG TYR ALA ALA ALA LYS SEQRES 1 B 231 MET SER TYR TYR HIS HIS HIS HIS HIS HIS LEU GLU SER SEQRES 2 B 231 THR SER LEU TYR LYS LYS ALA LEU ALA TYR THR LEU PRO SEQRES 3 B 231 GLN LEU PRO TYR ALA TYR ASP ALA LEU GLU PRO HIS ILE SEQRES 4 B 231 ASP ALA ARG THR MET GLU ILE HIS HIS THR LYS HIS HIS SEQRES 5 B 231 GLN THR TYR VAL ASP ASN ALA ASN LYS ALA LEU GLU GLY SEQRES 6 B 231 THR GLU PHE ALA ASP LEU PRO VAL GLU GLN LEU ILE GLN SEQRES 7 B 231 GLN LEU ASP ARG VAL PRO ALA ASP LYS LYS GLY ALA LEU SEQRES 8 B 231 ARG ASN ASN ALA GLY GLY HIS ALA ASN HIS SER MET PHE SEQRES 9 B 231 TRP GLN ILE MET GLY GLN GLY GLN GLY GLN ASN GLY ALA SEQRES 10 B 231 ASN GLN PRO SER GLY GLU LEU LEU ASP ALA ILE ASN SER SEQRES 11 B 231 ALA PHE GLY SER PHE ASP ALA PHE LYS GLN LYS PHE GLU SEQRES 12 B 231 ASP ALA ALA LYS THR ARG PHE GLY SER GLY TRP ALA TRP SEQRES 13 B 231 LEU VAL VAL LYS ASP GLY LYS LEU ASP VAL VAL SER THR SEQRES 14 B 231 ALA ASN GLN ASP ASN PRO LEU MET GLY GLU ALA ILE ALA SEQRES 15 B 231 GLY VAL SER GLY THR PRO ILE LEU GLY VAL ASP VAL TRP SEQRES 16 B 231 GLU HIS ALA TYR TYR LEU ASN TYR GLN ASN ARG ARG PRO SEQRES 17 B 231 ASP TYR LEU ALA ALA PHE TRP ASN VAL VAL ASN TRP ASP SEQRES 18 B 231 GLU VAL SER LYS ARG TYR ALA ALA ALA LYS HET MN A1211 1 HET MN B1211 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 2(MN 2+) FORMUL 5 HOH *365(H2 O) HELIX 1 1 ASP A 19 LYS A 29 1 11 HELIX 2 2 LYS A 29 GLU A 43 1 15 HELIX 3 3 PRO A 51 ILE A 56 1 6 HELIX 4 4 LYS A 66 ILE A 86 1 21 HELIX 5 5 SER A 100 GLY A 112 1 13 HELIX 6 6 SER A 113 THR A 127 1 15 HELIX 7 7 ASN A 153 MET A 156 5 4 HELIX 8 8 GLY A 157 GLY A 162 1 6 HELIX 9 9 TRP A 174 ALA A 177 5 4 HELIX 10 10 TYR A 178 GLN A 183 1 6 HELIX 11 11 ARG A 185 TRP A 194 1 10 HELIX 12 12 ASN A 198 LYS A 210 1 13 HELIX 13 13 ASP B 19 LYS B 29 1 11 HELIX 14 14 LYS B 29 GLU B 43 1 15 HELIX 15 15 PRO B 51 ILE B 56 1 6 HELIX 16 16 GLN B 57 VAL B 62 5 6 HELIX 17 17 PRO B 63 ILE B 86 1 24 HELIX 18 18 SER B 100 GLY B 112 1 13 HELIX 19 19 SER B 113 THR B 127 1 15 HELIX 20 20 ASN B 153 MET B 156 5 4 HELIX 21 21 GLY B 157 GLY B 162 1 6 HELIX 22 22 TRP B 174 ALA B 177 5 4 HELIX 23 23 TYR B 178 GLN B 183 1 6 HELIX 24 24 ARG B 185 TRP B 194 1 10 HELIX 25 25 ASN B 198 LYS B 210 1 13 SHEET 1 AA 3 LYS A 142 ALA A 149 0 SHEET 2 AA 3 GLY A 132 LYS A 139 -1 O TRP A 133 N THR A 148 SHEET 3 AA 3 THR A 166 ASP A 172 -1 O THR A 166 N VAL A 138 SHEET 1 BA 3 LYS B 142 ALA B 149 0 SHEET 2 BA 3 GLY B 132 LYS B 139 -1 O TRP B 133 N THR B 148 SHEET 3 BA 3 THR B 166 ASP B 172 -1 O THR B 166 N VAL B 138 LINK NE2 HIS A 26 MN MN A1211 1555 1555 2.22 LINK NE2 HIS A 80 MN MN A1211 1555 1555 2.03 LINK OD2 ASP A 172 MN MN A1211 1555 1555 1.90 LINK NE2 HIS A 176 MN MN A1211 1555 1555 2.21 LINK MN MN A1211 O HOH A2198 1555 1555 2.18 LINK NE2 HIS B 26 MN MN B1211 1555 1555 2.15 LINK NE2 HIS B 80 MN MN B1211 1555 1555 2.16 LINK OD2 ASP B 172 MN MN B1211 1555 1555 1.96 LINK NE2 HIS B 176 MN MN B1211 1555 1555 2.10 LINK MN MN B1211 O HOH B2167 1555 1555 2.20 CISPEP 1 GLU A 15 PRO A 16 0 -7.98 CISPEP 2 GLU B 15 PRO B 16 0 -2.08 SITE 1 AC1 5 HIS A 26 HIS A 80 ASP A 172 HIS A 176 SITE 2 AC1 5 HOH A2198 SITE 1 AC2 5 HIS B 26 HIS B 80 ASP B 172 HIS B 176 SITE 2 AC2 5 HOH B2167 CRYST1 44.280 83.210 59.520 90.00 110.18 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022584 0.000000 0.008300 0.00000 SCALE2 0.000000 0.012018 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017900 0.00000 MTRIX1 1 0.995000 -0.091000 -0.043000 42.89740 1 MTRIX2 1 0.088000 0.994000 -0.061000 17.99276 1 MTRIX3 1 0.048000 0.057000 0.997000 56.18528 1