HEADER ISOMERASE 17-FEB-06 2CFB TITLE GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE FROM THERMOSYNECHOCOCCUS TITLE 2 ELONGATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GSA, GLUTAMATE-1-SEMIALDEHYDE AMINOTRANSFERASE, GSA-AT; COMPND 5 EC: 5.4.3.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS; SOURCE 3 ORGANISM_TAXID: 32046; SOURCE 4 STRAIN: BP-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETM30 KEYWDS TETRAPYRROLE BIOSYNTHESIS, PYRIDOXAL PHOSPHATE DEPENDENT, KEYWDS 2 AMINOTRANSFERASE, ISOMERASE, PORPHYRIN BIOSYNTHESIS, CHLOROPHYLL KEYWDS 3 BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR J.O.SCHULZE,W.-D.SCHUBERT,J.MOSER,D.JAHN,D.W.HEINZ REVDAT 6 13-DEC-23 2CFB 1 LINK REVDAT 5 13-JUL-11 2CFB 1 VERSN REVDAT 4 24-FEB-09 2CFB 1 VERSN REVDAT 3 03-MAY-06 2CFB 1 JRNL REVDAT 2 24-APR-06 2CFB 1 REMARK HELIX SHEET REVDAT 1 29-MAR-06 2CFB 0 JRNL AUTH J.O.SCHULZE,W.-D.SCHUBERT,J.MOSER,D.JAHN,D.W.HEINZ JRNL TITL EVOLUTIONARY RELATIONSHIP BETWEEN INITIAL ENZYMES OF JRNL TITL 2 TETRAPYRROLE BIOSYNTHESIS JRNL REF J.MOL.BIOL. V. 358 1212 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16564539 JRNL DOI 10.1016/J.JMB.2006.02.064 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 678 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 926 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.2230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2717 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 48.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.75000 REMARK 3 B22 (A**2) : -3.75000 REMARK 3 B33 (A**2) : 7.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.606 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.294 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.225 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.669 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2794 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2559 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3790 ; 1.826 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5928 ; 0.818 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 357 ; 5.007 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;37.656 ;23.793 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 436 ;16.811 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.853 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 420 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3146 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 568 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 675 ; 0.246 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2662 ; 0.207 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1432 ; 0.209 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1723 ; 0.100 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 76 ; 0.180 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.151 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 42 ; 0.211 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.264 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2187 ; 2.722 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2826 ; 3.658 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1170 ; 2.376 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 964 ; 3.666 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 411 REMARK 3 ORIGIN FOR THE GROUP (A): 29.1320 86.1210 39.4950 REMARK 3 T TENSOR REMARK 3 T11: 0.0974 T22: 0.2643 REMARK 3 T33: -0.0159 T12: -0.0098 REMARK 3 T13: -0.0558 T23: -0.0825 REMARK 3 L TENSOR REMARK 3 L11: 2.8818 L22: 1.6432 REMARK 3 L33: 0.9277 L12: -0.0683 REMARK 3 L13: -0.7584 L23: -0.0421 REMARK 3 S TENSOR REMARK 3 S11: 0.0822 S12: -0.4847 S13: 0.2496 REMARK 3 S21: 0.2421 S22: -0.0461 S23: -0.0034 REMARK 3 S31: -0.0592 S32: 0.0828 S33: -0.0362 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. 1-18, 132-159 AND 278-282 ARE DISORDERED. REMARK 4 REMARK 4 2CFB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1290027809. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU R-AXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24944 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 2GSA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM PIPES PH 6.5, 200 MM MAGNESIUM REMARK 280 SULFATE, 17% PEG 3350, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.69500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.46000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.46000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.34750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.46000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.46000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 70.04250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.46000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.46000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 23.34750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.46000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.46000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 70.04250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 46.69500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 108.92000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 108.92000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 46.69500 REMARK 400 REMARK 400 COMPOUND REMARK 400 CATALYTIC ACTIVITY: (S)-4-AMINO-5-OXOPENTANOATE = REMARK 400 5-AMINOLEVULINATE. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLY A 3 REMARK 465 GLY A 4 REMARK 465 VAL A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 PRO A 8 REMARK 465 VAL A 9 REMARK 465 ARG A 10 REMARK 465 ALA A 11 REMARK 465 PHE A 12 REMARK 465 LYS A 13 REMARK 465 SER A 14 REMARK 465 VAL A 15 REMARK 465 GLY A 16 REMARK 465 GLY A 17 REMARK 465 GLN A 18 REMARK 465 ALA A 132 REMARK 465 ASP A 133 REMARK 465 MET A 134 REMARK 465 PHE A 135 REMARK 465 LEU A 136 REMARK 465 VAL A 137 REMARK 465 LYS A 138 REMARK 465 ALA A 139 REMARK 465 GLY A 140 REMARK 465 SER A 141 REMARK 465 GLY A 142 REMARK 465 VAL A 143 REMARK 465 ALA A 144 REMARK 465 THR A 145 REMARK 465 LEU A 146 REMARK 465 GLY A 147 REMARK 465 LEU A 148 REMARK 465 PRO A 149 REMARK 465 ASP A 150 REMARK 465 SER A 151 REMARK 465 PRO A 152 REMARK 465 GLY A 153 REMARK 465 VAL A 154 REMARK 465 PRO A 155 REMARK 465 LYS A 156 REMARK 465 ALA A 157 REMARK 465 THR A 158 REMARK 465 THR A 159 REMARK 465 VAL A 278 REMARK 465 TYR A 279 REMARK 465 GLN A 280 REMARK 465 ALA A 281 REMARK 465 GLY A 282 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 218 O HOH A 2010 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 103 CB GLU A 103 CG -0.116 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 210 CG - CD - NE ANGL. DEV. = 13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 26 136.89 -170.56 REMARK 500 ALA A 48 47.51 -76.21 REMARK 500 PRO A 90 -72.70 -56.13 REMARK 500 ASN A 168 13.57 53.74 REMARK 500 PHE A 229 2.95 51.84 REMARK 500 LYS A 251 -93.86 34.57 REMARK 500 PRO A 274 78.25 -54.25 REMARK 500 ALA A 275 49.91 131.69 REMARK 500 SER A 338 -144.42 47.93 REMARK 500 ASP A 396 -37.07 -39.33 REMARK 500 SER A 409 36.56 -86.50 REMARK 500 GLN A 410 11.11 -150.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: PROVIDED BY DEPOSITIOR REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLR A1412 DBREF 2CFB A 1 411 UNP Q8DLK8 GSA_SYNEL 27 437 SEQRES 1 A 411 MET PRO GLY GLY VAL SER SER PRO VAL ARG ALA PHE LYS SEQRES 2 A 411 SER VAL GLY GLY GLN PRO ILE VAL PHE ASP HIS VAL LYS SEQRES 3 A 411 GLY ALA HIS ILE TRP ASP VAL ASP GLY ASN GLN TYR ILE SEQRES 4 A 411 ASP TYR VAL GLY SER TRP GLY PRO ALA ILE VAL GLY HIS SEQRES 5 A 411 ALA HIS PRO GLU VAL ILE ASP ALA LEU HIS ALA ALA LEU SEQRES 6 A 411 GLU LYS GLY THR SER PHE GLY ALA PRO CYS LEU LEU GLU SEQRES 7 A 411 ASN ILE LEU ALA GLU MET VAL ILE ALA ALA VAL PRO SER SEQRES 8 A 411 VAL GLU MET VAL ARG PHE VAL ASN SER GLY THR GLU ALA SEQRES 9 A 411 CYS MET ALA VAL LEU ARG LEU MET ARG ALA TYR THR GLN SEQRES 10 A 411 ARG GLU LYS VAL ILE LYS PHE GLU GLY CYS TYR HIS GLY SEQRES 11 A 411 HIS ALA ASP MET PHE LEU VAL LYS ALA GLY SER GLY VAL SEQRES 12 A 411 ALA THR LEU GLY LEU PRO ASP SER PRO GLY VAL PRO LYS SEQRES 13 A 411 ALA THR THR ALA ALA THR LEU THR ALA PRO TYR ASN ASP SEQRES 14 A 411 LEU GLU ALA VAL SER ARG LEU PHE GLU GLN TYR PRO ASN SEQRES 15 A 411 ASP ILE ALA GLY VAL ILE LEU GLU PRO VAL VAL GLY ASN SEQRES 16 A 411 ALA GLY PHE ILE PRO PRO ASP ALA GLY PHE LEU GLU GLY SEQRES 17 A 411 LEU ARG GLU LEU THR LYS GLN TYR GLY ALA LEU LEU VAL SEQRES 18 A 411 PHE ASP GLU VAL MET THR GLY PHE ARG ILE ALA TYR GLY SEQRES 19 A 411 GLY ALA GLN GLU LYS PHE GLY VAL THR PRO ASP LEU THR SEQRES 20 A 411 THR LEU GLY LYS VAL ILE GLY GLY GLY LEU PRO VAL GLY SEQRES 21 A 411 ALA TYR GLY GLY ARG ALA GLU ILE MET LYS MET VAL ALA SEQRES 22 A 411 PRO ALA GLY PRO VAL TYR GLN ALA GLY THR LEU SER GLY SEQRES 23 A 411 ASN PRO LEU ALA MET THR ALA GLY ILE LYS THR LEU GLU SEQRES 24 A 411 ILE LEU SER ARG PRO GLY SER TYR GLU HIS LEU ASP ARG SEQRES 25 A 411 ILE THR GLY LYS LEU VAL GLN GLY LEU LEU ASP ALA ALA SEQRES 26 A 411 ARG GLU PHE GLY HIS GLU VAL CYS GLY GLY HIS ILE SER SEQRES 27 A 411 GLY MET PHE GLY LEU PHE PHE THR ALA GLY PRO VAL THR SEQRES 28 A 411 ASN TYR GLU GLN ALA LYS GLN SER ASP LEU LYS LYS PHE SEQRES 29 A 411 ALA ALA PHE HIS ARG GLY MET LEU GLU GLN GLY ILE TYR SEQRES 30 A 411 LEU ALA PRO SER GLN PHE GLU ALA GLY PHE THR SER LEU SEQRES 31 A 411 ALA HIS THR GLU ALA ASP ILE GLU ARG THR ILE ALA ALA SEQRES 32 A 411 ALA ARG THR VAL LEU SER GLN LEU HET PLR A1412 15 HETNAM PLR (5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN HETNAM 2 PLR PHOSPHATE HETSYN PLR 4'-DEOXYPYRIDOXINE PHOSPHATE FORMUL 2 PLR C8 H12 N O5 P FORMUL 3 HOH *13(H2 O) HELIX 1 1 HIS A 54 GLU A 66 1 13 HELIX 2 2 LEU A 76 VAL A 89 1 14 HELIX 3 3 GLY A 101 THR A 116 1 16 HELIX 4 4 LEU A 170 TYR A 180 1 11 HELIX 5 5 PHE A 205 TYR A 216 1 12 HELIX 6 6 ALA A 236 GLY A 241 1 6 HELIX 7 7 LYS A 251 GLY A 255 5 5 HELIX 8 8 ALA A 266 LYS A 270 1 5 HELIX 9 9 PRO A 288 SER A 302 1 15 HELIX 10 10 SER A 306 GLU A 327 1 22 HELIX 11 11 ASN A 352 GLN A 358 1 7 HELIX 12 12 LEU A 361 GLN A 374 1 14 HELIX 13 13 GLU A 394 SER A 409 1 16 SHEET 1 AA 4 ASP A 23 LYS A 26 0 SHEET 2 AA 4 HIS A 29 ASP A 32 -1 O HIS A 29 N LYS A 26 SHEET 3 AA 4 GLY A 35 ASP A 40 -1 O TYR A 38 N ILE A 30 SHEET 4 AA 4 ILE A 376 TYR A 377 1 N TYR A 377 O ILE A 39 SHEET 1 AB 7 GLU A 93 VAL A 98 0 SHEET 2 AB 7 GLY A 260 GLY A 264 -1 O GLY A 260 N VAL A 98 SHEET 3 AB 7 LEU A 246 LEU A 249 -1 O THR A 247 N GLY A 263 SHEET 4 AB 7 LEU A 219 GLU A 224 1 O PHE A 222 N THR A 248 SHEET 5 AB 7 ILE A 184 LEU A 189 1 O ALA A 185 N LEU A 219 SHEET 6 AB 7 LYS A 120 GLU A 125 1 O LYS A 120 N ALA A 185 SHEET 7 AB 7 THR A 162 PRO A 166 1 O LEU A 163 N LYS A 123 SHEET 1 AC 3 CYS A 333 ILE A 337 0 SHEET 2 AC 3 MET A 340 PHE A 344 -1 O MET A 340 N ILE A 337 SHEET 3 AC 3 GLY A 386 SER A 389 -1 O GLY A 386 N PHE A 341 LINK NZ LYS A 251 C4A PLR A1412 1555 1555 1.37 CISPEP 1 GLY A 276 PRO A 277 0 -10.06 CISPEP 2 GLY A 348 PRO A 349 0 2.27 SITE 1 AC1 11 SER A 100 GLY A 101 THR A 102 TYR A 128 SITE 2 AC1 11 GLU A 190 ASN A 195 ASP A 223 VAL A 225 SITE 3 AC1 11 MET A 226 LYS A 251 HOH A2013 CRYST1 108.920 108.920 93.390 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009181 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009181 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010708 0.00000