HEADER LIGASE 22-FEB-06 2CFM TITLE ATP-DEPENDENT DNA LIGASE FROM PYROCOCCUS FURIOSUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOSTABLE DNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POLYDEOXYRIBONUCLEOTIDE SYNTHASE [ATP], PFU DNA LIGASE; COMPND 5 EC: 6.5.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: AMP IS BOUND IN THE POCKET NON-COVALENTLY SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21D KEYWDS LIGASE, PROTEIN-NUCLEOTIDE COMPLEX, CELL CYCLE, CELL DIVISION, DNA KEYWDS 2 DAMAGE, DNA RECOMBINATION, DNA REPAIR, DNA REPLICATION, NUCLEOTIDE- KEYWDS 3 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR H.NISHIDA,Y.ISHINO,K.MORIKAWA REVDAT 5 06-FEB-19 2CFM 1 REMARK REVDAT 4 30-JAN-19 2CFM 1 REMARK REVDAT 3 24-FEB-09 2CFM 1 VERSN REVDAT 2 26-JUL-06 2CFM 1 JRNL REVDAT 1 12-JUL-06 2CFM 0 JRNL AUTH H.NISHIDA,S.KIYONARI,Y.ISHINO,K.MORIKAWA JRNL TITL THE CLOSED STRUCTURE OF AN ARCHAEAL DNA LIGASE FROM JRNL TITL 2 PYROCOCCUS FURIOSUS. JRNL REF J.MOL.BIOL. V. 360 956 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16820169 JRNL DOI 10.1016/J.JMB.2006.05.062 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 56943 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4051 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4423 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.390 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CFM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1290027880. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797, 0.9791, 0.9787, 0.9587 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS-IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56984 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ETHANOL, PH 8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K, PH 8.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.69950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 2 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 GLN A 103 CG CD OE1 NE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 THR A 127 OG1 CG2 REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 ARG A 276 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 322 CG CD CE NZ REMARK 470 GLU A 327 CG CD OE1 OE2 REMARK 470 GLU A 330 CG CD OE1 OE2 REMARK 470 PRO A 514 CG CD REMARK 470 LYS A 515 CG CD CE NZ REMARK 470 TYR A 516 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 517 CG CD NE CZ NH1 NH2 REMARK 470 SER A 561 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 109 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 ARG A 358 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 358 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 55 -37.14 88.21 REMARK 500 GLU A 129 -89.01 -70.89 REMARK 500 ASP A 345 64.30 39.76 REMARK 500 ARG A 414 79.61 -106.76 REMARK 500 LYS A 515 -74.10 -44.23 REMARK 500 ARG A 531 64.03 -115.21 REMARK 500 GLU A 560 -155.60 77.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 43 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1562 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2253 O REMARK 620 2 HOH A2329 O 170.7 REMARK 620 3 HOH A2330 O 88.0 90.2 REMARK 620 4 HOH A2419 O 87.4 94.7 174.9 REMARK 620 5 HOH A2450 O 78.8 91.9 87.4 93.9 REMARK 620 6 HOH A2218 O 93.8 95.4 91.7 86.4 172.6 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1562 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A1563 DBREF 2CFM A 1 561 UNP P56709 DNLI_PYRFU 1 561 SEQRES 1 A 561 MSE ARG TYR LEU GLU LEU ALA GLN LEU TYR GLN LYS LEU SEQRES 2 A 561 GLU LYS THR THR MSE LYS LEU ILE LYS THR ARG LEU VAL SEQRES 3 A 561 ALA ASP PHE LEU LYS LYS VAL PRO ASP ASP HIS LEU GLU SEQRES 4 A 561 PHE ILE PRO TYR LEU ILE LEU GLY GLU VAL PHE PRO GLU SEQRES 5 A 561 TRP ASP GLU ARG GLU LEU GLY VAL GLY GLU LYS LEU LEU SEQRES 6 A 561 ILE LYS ALA VAL ALA MSE ALA THR GLY ILE ASP ALA LYS SEQRES 7 A 561 GLU ILE GLU GLU SER VAL LYS ASP THR GLY ASP LEU GLY SEQRES 8 A 561 GLU SER ILE ALA LEU ALA VAL LYS LYS LYS LYS GLN LYS SEQRES 9 A 561 SER PHE PHE SER GLN PRO LEU THR ILE LYS ARG VAL TYR SEQRES 10 A 561 GLN THR LEU VAL LYS VAL ALA GLU THR THR GLY GLU GLY SEQRES 11 A 561 SER GLN ASP LYS LYS VAL LYS TYR LEU ALA ASP LEU PHE SEQRES 12 A 561 MSE ASP ALA GLU PRO LEU GLU ALA LYS TYR LEU ALA ARG SEQRES 13 A 561 THR ILE LEU GLY THR MSE ARG THR GLY VAL ALA GLU GLY SEQRES 14 A 561 LEU LEU ARG ASP ALA ILE ALA MSE ALA PHE HIS VAL LYS SEQRES 15 A 561 VAL GLU LEU VAL GLU ARG ALA TYR MSE LEU THR SER ASP SEQRES 16 A 561 PHE GLY TYR VAL ALA LYS ILE ALA LYS LEU GLU GLY ASN SEQRES 17 A 561 GLU GLY LEU ALA LYS VAL GLN VAL GLN LEU GLY LYS PRO SEQRES 18 A 561 ILE LYS PRO MSE LEU ALA GLN GLN ALA ALA SER ILE ARG SEQRES 19 A 561 ASP ALA LEU LEU GLU MSE GLY GLY GLU ALA GLU PHE GLU SEQRES 20 A 561 ILE LYS TYR ASP GLY ALA ARG VAL GLN VAL HIS LYS ASP SEQRES 21 A 561 GLY SER LYS ILE ILE VAL TYR SER ARG ARG LEU GLU ASN SEQRES 22 A 561 VAL THR ARG ALA ILE PRO GLU ILE VAL GLU ALA LEU LYS SEQRES 23 A 561 GLU ALA ILE ILE PRO GLU LYS ALA ILE VAL GLU GLY GLU SEQRES 24 A 561 LEU VAL ALA ILE GLY GLU ASN GLY ARG PRO LEU PRO PHE SEQRES 25 A 561 GLN TYR VAL LEU ARG ARG PHE ARG ARG LYS HIS ASN ILE SEQRES 26 A 561 GLU GLU MSE MSE GLU LYS ILE PRO LEU GLU LEU ASN LEU SEQRES 27 A 561 PHE ASP VAL LEU TYR VAL ASP GLY GLN SER LEU ILE ASP SEQRES 28 A 561 THR LYS PHE ILE ASP ARG ARG ARG THR LEU GLU GLU ILE SEQRES 29 A 561 ILE LYS GLN ASN GLU LYS ILE LYS VAL ALA GLU ASN LEU SEQRES 30 A 561 ILE THR LYS LYS VAL GLU GLU ALA GLU ALA PHE TYR LYS SEQRES 31 A 561 ARG ALA LEU GLU MSE GLY HIS GLU GLY LEU MSE ALA LYS SEQRES 32 A 561 ARG LEU ASP ALA VAL TYR GLU PRO GLY ASN ARG GLY LYS SEQRES 33 A 561 LYS TRP LEU LYS ILE LYS PRO THR MSE GLU ASN LEU ASP SEQRES 34 A 561 LEU VAL ILE ILE GLY ALA GLU TRP GLY GLU GLY ARG ARG SEQRES 35 A 561 ALA HIS LEU PHE GLY SER PHE ILE LEU GLY ALA TYR ASP SEQRES 36 A 561 PRO GLU THR GLY GLU PHE LEU GLU VAL GLY LYS VAL GLY SEQRES 37 A 561 SER GLY PHE THR ASP ASP ASP LEU VAL GLU PHE THR LYS SEQRES 38 A 561 MSE LEU LYS PRO LEU ILE ILE LYS GLU GLU GLY LYS ARG SEQRES 39 A 561 VAL TRP LEU GLN PRO LYS VAL VAL ILE GLU VAL THR TYR SEQRES 40 A 561 GLN GLU ILE GLN LYS SER PRO LYS TYR ARG SER GLY PHE SEQRES 41 A 561 ALA LEU ARG PHE PRO ARG PHE VAL ALA LEU ARG ASP ASP SEQRES 42 A 561 LYS GLY PRO GLU ASP ALA ASP THR ILE GLU ARG ILE ALA SEQRES 43 A 561 GLN LEU TYR GLU LEU GLN GLU LYS MSE LYS GLY LYS VAL SEQRES 44 A 561 GLU SER MODRES 2CFM MSE A 1 MET SELENOMETHIONINE MODRES 2CFM MSE A 18 MET SELENOMETHIONINE MODRES 2CFM MSE A 71 MET SELENOMETHIONINE MODRES 2CFM MSE A 144 MET SELENOMETHIONINE MODRES 2CFM MSE A 162 MET SELENOMETHIONINE MODRES 2CFM MSE A 177 MET SELENOMETHIONINE MODRES 2CFM MSE A 191 MET SELENOMETHIONINE MODRES 2CFM MSE A 225 MET SELENOMETHIONINE MODRES 2CFM MSE A 240 MET SELENOMETHIONINE MODRES 2CFM MSE A 328 MET SELENOMETHIONINE MODRES 2CFM MSE A 329 MET SELENOMETHIONINE MODRES 2CFM MSE A 395 MET SELENOMETHIONINE MODRES 2CFM MSE A 401 MET SELENOMETHIONINE MODRES 2CFM MSE A 425 MET SELENOMETHIONINE MODRES 2CFM MSE A 482 MET SELENOMETHIONINE MODRES 2CFM MSE A 555 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 18 8 HET MSE A 71 8 HET MSE A 144 8 HET MSE A 162 8 HET MSE A 177 8 HET MSE A 191 8 HET MSE A 225 8 HET MSE A 240 8 HET MSE A 328 8 HET MSE A 329 8 HET MSE A 395 8 HET MSE A 401 8 HET MSE A 425 8 HET MSE A 482 8 HET MSE A 555 8 HET MG A1562 1 HET AMP A1563 23 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 2 MG MG 2+ FORMUL 3 AMP C10 H14 N5 O7 P FORMUL 4 HOH *450(H2 O) HELIX 1 1 ARG A 2 LYS A 15 1 14 HELIX 2 2 MSE A 18 VAL A 33 1 16 HELIX 3 3 PRO A 34 LEU A 38 5 5 HELIX 4 4 PHE A 40 LEU A 46 1 7 HELIX 5 5 GLY A 61 GLY A 74 1 14 HELIX 6 6 ASP A 76 GLY A 88 1 13 HELIX 7 7 ASP A 89 LYS A 102 1 14 HELIX 8 8 THR A 112 THR A 126 1 15 HELIX 9 9 GLY A 130 MSE A 144 1 15 HELIX 10 10 GLU A 147 GLY A 160 1 14 HELIX 11 11 ALA A 167 PHE A 179 1 13 HELIX 12 12 LYS A 182 SER A 194 1 13 HELIX 13 13 ASP A 195 VAL A 214 1 20 HELIX 14 14 SER A 232 MSE A 240 1 9 HELIX 15 15 VAL A 274 ALA A 277 5 4 HELIX 16 16 ILE A 278 ILE A 289 1 12 HELIX 17 17 PHE A 312 ARG A 321 1 10 HELIX 18 18 ASN A 324 ILE A 332 1 9 HELIX 19 19 LYS A 353 ILE A 365 1 13 HELIX 20 20 LYS A 381 MSE A 395 1 15 HELIX 21 21 GLU A 439 ALA A 443 5 5 HELIX 22 22 THR A 472 LYS A 484 1 13 HELIX 23 23 GLY A 535 ALA A 539 5 5 HELIX 24 24 THR A 541 LYS A 558 1 18 SHEET 1 AA 5 LEU A 226 ALA A 230 0 SHEET 2 AA 5 ARG A 414 ILE A 421 1 O GLY A 415 N GLN A 228 SHEET 3 AA 5 GLY A 399 LYS A 403 -1 O LEU A 400 N ILE A 421 SHEET 4 AA 5 ALA A 244 LYS A 249 -1 O GLU A 245 N LYS A 403 SHEET 5 AA 5 ASN A 376 THR A 379 -1 O LEU A 377 N PHE A 246 SHEET 1 AB 5 LYS A 263 TYR A 267 0 SHEET 2 AB 5 ALA A 253 ASP A 260 -1 O GLN A 256 N TYR A 267 SHEET 3 AB 5 LYS A 293 ALA A 302 -1 O ALA A 294 N LYS A 259 SHEET 4 AB 5 LEU A 334 VAL A 344 -1 O GLU A 335 N VAL A 301 SHEET 5 AB 5 ILE A 371 VAL A 373 1 O LYS A 372 N LEU A 338 SHEET 1 AC 5 LYS A 263 TYR A 267 0 SHEET 2 AC 5 ALA A 253 ASP A 260 -1 O GLN A 256 N TYR A 267 SHEET 3 AC 5 LYS A 293 ALA A 302 -1 O ALA A 294 N LYS A 259 SHEET 4 AC 5 LEU A 334 VAL A 344 -1 O GLU A 335 N VAL A 301 SHEET 5 AC 5 GLN A 347 SER A 348 -1 O GLN A 347 N VAL A 344 SHEET 1 AD 5 PHE A 461 VAL A 467 0 SHEET 2 AD 5 PHE A 446 TYR A 454 -1 O PHE A 449 N VAL A 467 SHEET 3 AD 5 LEU A 428 TRP A 437 -1 O VAL A 431 N GLY A 452 SHEET 4 AD 5 VAL A 502 THR A 506 -1 O ILE A 503 N LEU A 430 SHEET 5 AD 5 ARG A 526 LEU A 530 -1 O ARG A 526 N THR A 506 SHEET 1 AE 5 PHE A 461 VAL A 467 0 SHEET 2 AE 5 PHE A 446 TYR A 454 -1 O PHE A 449 N VAL A 467 SHEET 3 AE 5 LEU A 428 TRP A 437 -1 O VAL A 431 N GLY A 452 SHEET 4 AE 5 ARG A 494 LEU A 497 -1 O VAL A 495 N ALA A 435 SHEET 5 AE 5 ILE A 487 GLU A 491 -1 N ILE A 488 O TRP A 496 SHEET 1 AF 2 GLU A 509 GLN A 511 0 SHEET 2 AF 2 ALA A 521 ARG A 523 -1 O ALA A 521 N GLN A 511 LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C THR A 17 N MSE A 18 1555 1555 1.33 LINK C MSE A 18 N LYS A 19 1555 1555 1.32 LINK C ALA A 70 N MSE A 71 1555 1555 1.33 LINK C MSE A 71 N ALA A 72 1555 1555 1.32 LINK C PHE A 143 N MSE A 144 1555 1555 1.33 LINK C MSE A 144 N ASP A 145 1555 1555 1.33 LINK C THR A 161 N MSE A 162 1555 1555 1.33 LINK C MSE A 162 N ARG A 163 1555 1555 1.33 LINK C ALA A 176 N MSE A 177 1555 1555 1.33 LINK C MSE A 177 N ALA A 178 1555 1555 1.32 LINK C TYR A 190 N MSE A 191 1555 1555 1.33 LINK C MSE A 191 N LEU A 192 1555 1555 1.32 LINK C PRO A 224 N MSE A 225 1555 1555 1.33 LINK C MSE A 225 N LEU A 226 1555 1555 1.33 LINK C GLU A 239 N MSE A 240 1555 1555 1.33 LINK C MSE A 240 N GLY A 241 1555 1555 1.33 LINK C GLU A 327 N MSE A 328 1555 1555 1.33 LINK C MSE A 328 N MSE A 329 1555 1555 1.33 LINK C MSE A 329 N GLU A 330 1555 1555 1.33 LINK C GLU A 394 N MSE A 395 1555 1555 1.33 LINK C MSE A 395 N GLY A 396 1555 1555 1.33 LINK C LEU A 400 N MSE A 401 1555 1555 1.33 LINK C MSE A 401 N ALA A 402 1555 1555 1.32 LINK C THR A 424 N MSE A 425 1555 1555 1.33 LINK C MSE A 425 N GLU A 426 1555 1555 1.32 LINK C LYS A 481 N MSE A 482 1555 1555 1.33 LINK C MSE A 482 N LEU A 483 1555 1555 1.33 LINK C LYS A 554 N MSE A 555 1555 1555 1.33 LINK C MSE A 555 N LYS A 556 1555 1555 1.33 LINK MG MG A1562 O HOH A2253 1555 1555 2.19 LINK MG MG A1562 O HOH A2329 1555 1555 2.13 LINK MG MG A1562 O HOH A2330 1555 1555 2.23 LINK MG MG A1562 O HOH A2419 1555 1555 2.39 LINK MG MG A1562 O HOH A2450 1555 1555 2.21 LINK MG MG A1562 O HOH A2218 1555 1555 2.08 SITE 1 AC1 7 GLU A 299 HOH A2218 HOH A2253 HOH A2329 SITE 2 AC1 7 HOH A2330 HOH A2419 HOH A2450 SITE 1 AC2 20 LEU A 226 ALA A 227 GLU A 247 ILE A 248 SITE 2 AC2 20 LYS A 249 TYR A 250 ARG A 254 ARG A 269 SITE 3 AC2 20 GLU A 299 PHE A 339 MSE A 401 LYS A 403 SITE 4 AC2 20 LYS A 420 HOH A2233 HOH A2253 HOH A2356 SITE 5 AC2 20 HOH A2447 HOH A2448 HOH A2449 HOH A2450 CRYST1 60.866 87.399 62.648 90.00 109.22 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016430 0.000000 0.005728 0.00000 SCALE2 0.000000 0.011442 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016904 0.00000 HETATM 1 N MSE A 1 75.671 3.214 25.121 1.00 22.62 N HETATM 2 CA MSE A 1 75.465 4.668 24.886 1.00 23.05 C HETATM 3 C MSE A 1 74.480 5.221 25.912 1.00 21.14 C HETATM 4 O MSE A 1 73.441 4.614 26.183 1.00 18.08 O HETATM 5 CB MSE A 1 74.922 4.909 23.476 1.00 25.66 C HETATM 6 CG MSE A 1 74.621 6.359 23.186 1.00 30.20 C HETATM 7 SE MSE A 1 73.938 6.574 21.389 1.00 41.58 SE HETATM 8 CE MSE A 1 75.333 7.721 20.698 1.00 34.98 C