HEADER LIGASE 06-MAR-06 2CGH TITLE CRYSTAL STRUCTURE OF BIOTIN LIGASE FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOTIN LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 6.3.4.15; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS BIOTIN LIGASE, MYCOBACTERIUM TUBERCULOSIS, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.MA,M.WILMANNS REVDAT 9 13-DEC-23 2CGH 1 REMARK REVDAT 8 24-JUL-19 2CGH 1 REMARK REVDAT 7 07-MAR-18 2CGH 1 SOURCE REVDAT 6 12-JUL-17 2CGH 1 REVDAT 5 02-JUL-14 2CGH 1 JRNL REVDAT 4 23-APR-14 2CGH 1 TITLE JRNL REMARK REVDAT 3 13-JUL-11 2CGH 1 VERSN REVDAT 2 24-FEB-09 2CGH 1 VERSN REVDAT 1 01-MAY-07 2CGH 0 JRNL AUTH Q.MA,Y.AKHTER,M.WILMANNS,M.T.EHEBAUER JRNL TITL ACTIVE SITE CONFORMATIONAL CHANGES UPON REACTION JRNL TITL 2 INTERMEDIATE BIOTINYL-5'-AMP BINDING IN BIOTIN PROTEIN JRNL TITL 3 LIGASE FROM MYCOBACTERIUM TUBERCULOSIS. JRNL REF PROTEIN SCI. V. 23 932 2014 JRNL REFN ISSN 0961-8368 JRNL PMID 24723382 JRNL DOI 10.1002/PRO.2475 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 45951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2326 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3532 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3503 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 342 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 29.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.77000 REMARK 3 B22 (A**2) : 1.48000 REMARK 3 B33 (A**2) : -0.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.069 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3571 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3515 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4874 ; 1.775 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8047 ; 0.903 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 474 ;10.836 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;35.377 ;23.050 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 557 ;14.005 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;19.492 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 599 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4026 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 688 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 671 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3539 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1742 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2395 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 267 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.126 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 74 ; 0.334 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.185 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2525 ; 1.178 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3784 ; 1.659 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1287 ; 2.590 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1090 ; 3.937 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 218 REMARK 3 ORIGIN FOR THE GROUP (A): 38.2813 71.8882 14.0874 REMARK 3 T TENSOR REMARK 3 T11: -0.0637 T22: -0.0731 REMARK 3 T33: -0.0830 T12: 0.0618 REMARK 3 T13: -0.0099 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 1.2434 L22: 1.8146 REMARK 3 L33: 3.5045 L12: 0.0948 REMARK 3 L13: 0.2976 L23: -1.0258 REMARK 3 S TENSOR REMARK 3 S11: 0.0874 S12: 0.0710 S13: -0.0673 REMARK 3 S21: -0.2460 S22: -0.1340 S23: -0.1146 REMARK 3 S31: 0.2485 S32: 0.2173 S33: 0.0465 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 219 A 265 REMARK 3 ORIGIN FOR THE GROUP (A): 32.6183 55.1238 32.2716 REMARK 3 T TENSOR REMARK 3 T11: -0.0192 T22: -0.0576 REMARK 3 T33: -0.0776 T12: -0.0284 REMARK 3 T13: -0.0072 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 2.3119 L22: 3.4396 REMARK 3 L33: 2.3949 L12: 0.4550 REMARK 3 L13: 1.1396 L23: -2.0934 REMARK 3 S TENSOR REMARK 3 S11: -0.0700 S12: 0.2459 S13: -0.1021 REMARK 3 S21: -0.2696 S22: 0.0604 S23: 0.0557 REMARK 3 S31: 0.0610 S32: -0.0890 S33: 0.0096 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 218 REMARK 3 ORIGIN FOR THE GROUP (A): 41.1501 55.6113 64.9394 REMARK 3 T TENSOR REMARK 3 T11: -0.0863 T22: -0.0179 REMARK 3 T33: -0.0588 T12: 0.0400 REMARK 3 T13: 0.0095 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 2.0885 L22: 0.9064 REMARK 3 L33: 2.2059 L12: 0.1076 REMARK 3 L13: -0.5563 L23: -0.3695 REMARK 3 S TENSOR REMARK 3 S11: -0.0948 S12: -0.4103 S13: -0.1564 REMARK 3 S21: 0.0392 S22: 0.0242 S23: 0.0935 REMARK 3 S31: 0.1460 S32: 0.1862 S33: 0.0706 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 219 B 265 REMARK 3 ORIGIN FOR THE GROUP (A): 42.2549 50.0105 41.1266 REMARK 3 T TENSOR REMARK 3 T11: -0.0182 T22: -0.0807 REMARK 3 T33: -0.0286 T12: 0.0120 REMARK 3 T13: 0.0067 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 1.3208 L22: 2.5121 REMARK 3 L33: 3.2685 L12: 0.6074 REMARK 3 L13: 0.5143 L23: 0.0847 REMARK 3 S TENSOR REMARK 3 S11: -0.1312 S12: 0.1370 S13: -0.1414 REMARK 3 S21: 0.0227 S22: 0.0403 S23: -0.1464 REMARK 3 S31: -0.0059 S32: 0.0795 S33: 0.0909 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES WITH CLEAR ELECTRON DENSITY ARE MODELED. REMARK 4 REMARK 4 2CGH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1290028037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9364 REMARK 200 MONOCHROMATOR : FOCUSING DOUBLE SILICON REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48344 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 39.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 16.00 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CASPR REMARK 200 STARTING MODEL: PDB ENTRY 1HXD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS HCL PH8.5, 0.2M REMARK 280 TRIMETHYLAMINE N-OXIDE, 20%(W/V) MPEG 2000, PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.04950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.94050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.50350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.94050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.04950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.50350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 ARG A 4 REMARK 465 ASP A 5 REMARK 465 ARG A 6 REMARK 465 LEU A 7 REMARK 465 ALA A 65 REMARK 465 GLY A 66 REMARK 465 ARG A 67 REMARK 465 GLY A 68 REMARK 465 ARG A 69 REMARK 465 HIS A 70 REMARK 465 GLY A 71 REMARK 465 ARG A 72 REMARK 465 GLY A 73 REMARK 465 TRP A 74 REMARK 465 ALA A 75 REMARK 465 ALA A 76 REMARK 465 ALA A 162 REMARK 465 PRO A 163 REMARK 465 GLU A 164 REMARK 465 GLU A 165 REMARK 465 VAL A 166 REMARK 465 ASP A 167 REMARK 465 PRO A 168 REMARK 465 ASP A 169 REMARK 465 ARG A 266 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 ARG B 4 REMARK 465 ASP B 5 REMARK 465 ARG B 6 REMARK 465 LEU B 7 REMARK 465 GLY B 66 REMARK 465 ARG B 67 REMARK 465 GLY B 68 REMARK 465 ARG B 69 REMARK 465 HIS B 70 REMARK 465 GLY B 71 REMARK 465 ARG B 72 REMARK 465 GLY B 73 REMARK 465 TRP B 74 REMARK 465 ALA B 75 REMARK 465 ALA B 76 REMARK 465 PRO B 163 REMARK 465 GLU B 164 REMARK 465 GLU B 165 REMARK 465 VAL B 166 REMARK 465 ASP B 167 REMARK 465 ARG B 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 14 CD NE CZ NH1 NH2 REMARK 470 GLN A 35 CG CD OE1 NE2 REMARK 470 ARG A 89 NE CZ NH1 NH2 REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 ARG A 135 CD NE CZ NH1 NH2 REMARK 470 GLN A 161 CG CD OE1 NE2 REMARK 470 ARG B 14 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 135 NE CZ NH1 NH2 REMARK 470 GLN B 161 CG CD OE1 NE2 REMARK 470 ASP B 169 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2131 O HOH B 2100 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP B 100 CB TRP B 100 CG -0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 183 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 215 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 215 NE - CZ - NH2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 238 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP B 111 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 LEU B 176 N - CA - C ANGL. DEV. = 24.3 DEGREES REMARK 500 GLY B 177 N - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 ARG B 238 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 238 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 23 -69.10 -25.82 REMARK 500 ALA A 118 54.54 -95.50 REMARK 500 ALA A 122 -32.69 -25.38 REMARK 500 GLU A 123 -14.02 -145.92 REMARK 500 VAL A 159 -61.80 -99.62 REMARK 500 ALA B 23 132.21 -38.30 REMARK 500 ALA B 118 41.93 -89.83 REMARK 500 LEU B 176 -5.36 -52.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 122 GLU A 123 -104.72 REMARK 500 ASP B 175 LEU B 176 107.40 REMARK 500 LEU B 176 GLY B 177 130.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2008 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH B2024 DISTANCE = 7.60 ANGSTROMS REMARK 525 HOH B2051 DISTANCE = 6.18 ANGSTROMS REMARK 999 REMARK 999 SEQUENCE REMARK 999 OWING TO PLASMID CONSTRUCTION, THE SECOND AMINO ACID IS REMARK 999 CHANGED FROM THR TO ALA. AND GLY AND ALA ARE ADDED TO THE REMARK 999 N-TERMINAL OF THE PROTEIN. DBREF 2CGH A -1 0 PDB 2CGH 2CGH -1 0 DBREF 2CGH A 1 266 UNP P96884 P96884_MYCTU 1 266 DBREF 2CGH B -1 0 PDB 2CGH 2CGH -1 0 DBREF 2CGH B 1 266 UNP P96884 P96884_MYCTU 1 266 SEQRES 1 A 268 GLY ALA MET ALA ASP ARG ASP ARG LEU ARG PRO PRO LEU SEQRES 2 A 268 ASP GLU ARG SER LEU ARG ASP GLN LEU ILE GLY ALA GLY SEQRES 3 A 268 SER GLY TRP ARG GLN LEU ASP VAL VAL ALA GLN THR GLY SEQRES 4 A 268 SER THR ASN ALA ASP LEU LEU ALA ARG ALA ALA SER GLY SEQRES 5 A 268 ALA ASP ILE ASP GLY VAL VAL LEU ILE ALA GLU HIS GLN SEQRES 6 A 268 THR ALA GLY ARG GLY ARG HIS GLY ARG GLY TRP ALA ALA SEQRES 7 A 268 THR ALA ARG ALA GLN ILE ILE LEU SER VAL GLY VAL ARG SEQRES 8 A 268 VAL VAL ASP VAL PRO VAL GLN ALA TRP GLY TRP LEU SER SEQRES 9 A 268 LEU ALA ALA GLY LEU ALA VAL LEU ASP SER VAL ALA PRO SEQRES 10 A 268 LEU ILE ALA VAL PRO PRO ALA GLU THR GLY LEU LYS TRP SEQRES 11 A 268 PRO ASN ASP VAL LEU ALA ARG GLY GLY LYS LEU ALA GLY SEQRES 12 A 268 ILE LEU ALA GLU VAL ALA GLN PRO PHE VAL VAL LEU GLY SEQRES 13 A 268 VAL GLY LEU ASN VAL THR GLN ALA PRO GLU GLU VAL ASP SEQRES 14 A 268 PRO ASP ALA THR SER LEU LEU ASP LEU GLY VAL ALA ALA SEQRES 15 A 268 PRO ASP ARG ASN ARG ILE ALA SER ARG LEU LEU ARG GLU SEQRES 16 A 268 LEU GLU ALA ARG ILE ILE GLN TRP ARG ASN ALA ASN PRO SEQRES 17 A 268 GLN LEU ALA ALA ASP TYR ARG ALA ARG SER LEU THR ILE SEQRES 18 A 268 GLY SER ARG VAL ARG VAL GLU LEU PRO GLY GLY GLN ASP SEQRES 19 A 268 VAL VAL GLY ILE ALA ARG ASP ILE ASP ASP GLN GLY ARG SEQRES 20 A 268 LEU CYS LEU ASP VAL GLY GLY ARG THR VAL VAL VAL SER SEQRES 21 A 268 ALA GLY ASP VAL VAL HIS LEU ARG SEQRES 1 B 268 GLY ALA MET ALA ASP ARG ASP ARG LEU ARG PRO PRO LEU SEQRES 2 B 268 ASP GLU ARG SER LEU ARG ASP GLN LEU ILE GLY ALA GLY SEQRES 3 B 268 SER GLY TRP ARG GLN LEU ASP VAL VAL ALA GLN THR GLY SEQRES 4 B 268 SER THR ASN ALA ASP LEU LEU ALA ARG ALA ALA SER GLY SEQRES 5 B 268 ALA ASP ILE ASP GLY VAL VAL LEU ILE ALA GLU HIS GLN SEQRES 6 B 268 THR ALA GLY ARG GLY ARG HIS GLY ARG GLY TRP ALA ALA SEQRES 7 B 268 THR ALA ARG ALA GLN ILE ILE LEU SER VAL GLY VAL ARG SEQRES 8 B 268 VAL VAL ASP VAL PRO VAL GLN ALA TRP GLY TRP LEU SER SEQRES 9 B 268 LEU ALA ALA GLY LEU ALA VAL LEU ASP SER VAL ALA PRO SEQRES 10 B 268 LEU ILE ALA VAL PRO PRO ALA GLU THR GLY LEU LYS TRP SEQRES 11 B 268 PRO ASN ASP VAL LEU ALA ARG GLY GLY LYS LEU ALA GLY SEQRES 12 B 268 ILE LEU ALA GLU VAL ALA GLN PRO PHE VAL VAL LEU GLY SEQRES 13 B 268 VAL GLY LEU ASN VAL THR GLN ALA PRO GLU GLU VAL ASP SEQRES 14 B 268 PRO ASP ALA THR SER LEU LEU ASP LEU GLY VAL ALA ALA SEQRES 15 B 268 PRO ASP ARG ASN ARG ILE ALA SER ARG LEU LEU ARG GLU SEQRES 16 B 268 LEU GLU ALA ARG ILE ILE GLN TRP ARG ASN ALA ASN PRO SEQRES 17 B 268 GLN LEU ALA ALA ASP TYR ARG ALA ARG SER LEU THR ILE SEQRES 18 B 268 GLY SER ARG VAL ARG VAL GLU LEU PRO GLY GLY GLN ASP SEQRES 19 B 268 VAL VAL GLY ILE ALA ARG ASP ILE ASP ASP GLN GLY ARG SEQRES 20 B 268 LEU CYS LEU ASP VAL GLY GLY ARG THR VAL VAL VAL SER SEQRES 21 B 268 ALA GLY ASP VAL VAL HIS LEU ARG FORMUL 3 HOH *342(H2 O) HELIX 1 1 ASP A 12 ILE A 21 1 10 HELIX 2 2 SER A 38 SER A 49 1 12 HELIX 3 3 PRO A 94 TRP A 98 5 5 HELIX 4 4 GLY A 99 ALA A 114 1 16 HELIX 5 5 PRO A 115 ILE A 117 5 3 HELIX 6 6 PRO A 120 ALA A 122 5 3 HELIX 7 7 LEU A 173 GLY A 177 5 5 HELIX 8 8 ASP A 182 ASN A 203 1 22 HELIX 9 9 ASN A 205 ARG A 215 1 11 HELIX 10 10 ASP B 12 ILE B 21 1 10 HELIX 11 11 SER B 38 SER B 49 1 12 HELIX 12 12 PRO B 94 TRP B 98 5 5 HELIX 13 13 GLY B 99 ALA B 114 1 16 HELIX 14 14 PRO B 115 ILE B 117 5 3 HELIX 15 15 PRO B 120 ALA B 122 5 3 HELIX 16 16 SER B 172 GLY B 177 1 6 HELIX 17 17 ASP B 182 ASN B 203 1 22 HELIX 18 18 ASN B 205 SER B 216 1 12 SHEET 1 AA 7 GLN A 29 VAL A 33 0 SHEET 2 AA 7 VAL A 56 ALA A 60 1 O VAL A 57 N ASP A 31 SHEET 3 AA 7 GLN A 81 ARG A 89 -1 O ILE A 83 N ALA A 60 SHEET 4 AA 7 PHE A 150 ASN A 158 -1 O VAL A 151 N VAL A 88 SHEET 5 AA 7 GLY A 137 ALA A 147 -1 O LEU A 139 N ASN A 158 SHEET 6 AA 7 ASP A 131 ALA A 134 -1 O VAL A 132 N LEU A 139 SHEET 7 AA 7 THR A 124 LYS A 127 -1 O GLY A 125 N LEU A 133 SHEET 1 AB10 VAL A 263 LEU A 265 0 SHEET 2 AB10 ARG A 222 LEU A 227 -1 O ARG A 222 N LEU A 265 SHEET 3 AB10 GLN A 231 ILE A 240 -1 O GLN A 231 N LEU A 227 SHEET 4 AB10 LEU A 246 VAL A 250 -1 O CYS A 247 N ARG A 238 SHEET 5 AB10 ARG A 253 VAL A 257 -1 O ARG A 253 N VAL A 250 SHEET 6 AB10 ARG B 253 VAL B 257 -1 O VAL B 256 N VAL A 256 SHEET 7 AB10 LEU B 246 VAL B 250 -1 O LEU B 246 N VAL B 257 SHEET 8 AB10 GLN B 231 ILE B 240 -1 O ILE B 236 N ASP B 249 SHEET 9 AB10 ARG B 222 LEU B 227 -1 O VAL B 223 N GLY B 235 SHEET 10 AB10 VAL B 262 HIS B 264 -1 O VAL B 263 N ARG B 224 SHEET 1 BA 7 GLN B 29 VAL B 33 0 SHEET 2 BA 7 VAL B 56 ALA B 60 1 O VAL B 57 N ASP B 31 SHEET 3 BA 7 GLN B 81 ARG B 89 -1 O ILE B 83 N ALA B 60 SHEET 4 BA 7 PHE B 150 ASN B 158 -1 O VAL B 151 N VAL B 88 SHEET 5 BA 7 GLY B 137 ALA B 147 -1 O LEU B 139 N ASN B 158 SHEET 6 BA 7 ASP B 131 ALA B 134 -1 O VAL B 132 N LEU B 139 SHEET 7 BA 7 THR B 124 LYS B 127 -1 O GLY B 125 N LEU B 133 CISPEP 1 TRP A 128 PRO A 129 0 -2.65 CISPEP 2 GLN A 148 PRO A 149 0 6.87 CISPEP 3 TRP B 128 PRO B 129 0 -5.75 CISPEP 4 GLN B 148 PRO B 149 0 17.52 CRYST1 62.099 81.007 101.881 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016103 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012345 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009815 0.00000