data_2CH9 # _entry.id 2CH9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2CH9 PDBE EBI-28124 WWPDB D_1290028124 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CH9 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2006-03-13 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schuettelkopf, A.W.' 1 'van Aalten, D.M.F.' 2 # _citation.id primary _citation.title 'Structural Basis of Reduction-Dependent Activation of Human Cystatin F.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 281 _citation.page_first 16570 _citation.page_last ? _citation.year 2006 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16601115 _citation.pdbx_database_id_DOI 10.1074/JBC.M601033200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schuttelkopf, A.W.' 1 ? primary 'Hamilton, G.' 2 ? primary 'Watts, C.' 3 ? primary 'Van Aalten, D.M.F.' 4 ? # _cell.entry_id 2CH9 _cell.length_a 65.345 _cell.length_b 65.345 _cell.length_c 123.183 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CH9 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'CYSTATIN F' 15255.487 1 ? ? ? ? 2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose' 570.542 1 ? ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 5 ? ? ? ? 5 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 6 water nat water 18.015 65 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'LEUKOCYSTATIN, CYSTATIN-7, CMAP, CYSTATIN-LIKE METASTASIS-ASSOCIATED PROTEIN' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPSPDTCSQDLNSRVKPGFPKTIKTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTC KKNQHLRLDDCDFQTNHTLKQTLSCYSEVWVVPWLQHFEVPVLRCHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;GPSPDTCSQDLNSRVKPGFPKTIKTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTC KKNQHLRLDDCDFQTNHTLKQTLSCYSEVWVVPWLQHFEVPVLRCHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 SER n 1 4 PRO n 1 5 ASP n 1 6 THR n 1 7 CYS n 1 8 SER n 1 9 GLN n 1 10 ASP n 1 11 LEU n 1 12 ASN n 1 13 SER n 1 14 ARG n 1 15 VAL n 1 16 LYS n 1 17 PRO n 1 18 GLY n 1 19 PHE n 1 20 PRO n 1 21 LYS n 1 22 THR n 1 23 ILE n 1 24 LYS n 1 25 THR n 1 26 ASN n 1 27 ASP n 1 28 PRO n 1 29 GLY n 1 30 VAL n 1 31 LEU n 1 32 GLN n 1 33 ALA n 1 34 ALA n 1 35 ARG n 1 36 TYR n 1 37 SER n 1 38 VAL n 1 39 GLU n 1 40 LYS n 1 41 PHE n 1 42 ASN n 1 43 ASN n 1 44 CYS n 1 45 THR n 1 46 ASN n 1 47 ASP n 1 48 MET n 1 49 PHE n 1 50 LEU n 1 51 PHE n 1 52 LYS n 1 53 GLU n 1 54 SER n 1 55 ARG n 1 56 ILE n 1 57 THR n 1 58 ARG n 1 59 ALA n 1 60 LEU n 1 61 VAL n 1 62 GLN n 1 63 ILE n 1 64 VAL n 1 65 LYS n 1 66 GLY n 1 67 LEU n 1 68 LYS n 1 69 TYR n 1 70 MET n 1 71 LEU n 1 72 GLU n 1 73 VAL n 1 74 GLU n 1 75 ILE n 1 76 GLY n 1 77 ARG n 1 78 THR n 1 79 THR n 1 80 CYS n 1 81 LYS n 1 82 LYS n 1 83 ASN n 1 84 GLN n 1 85 HIS n 1 86 LEU n 1 87 ARG n 1 88 LEU n 1 89 ASP n 1 90 ASP n 1 91 CYS n 1 92 ASP n 1 93 PHE n 1 94 GLN n 1 95 THR n 1 96 ASN n 1 97 HIS n 1 98 THR n 1 99 LEU n 1 100 LYS n 1 101 GLN n 1 102 THR n 1 103 LEU n 1 104 SER n 1 105 CYS n 1 106 TYR n 1 107 SER n 1 108 GLU n 1 109 VAL n 1 110 TRP n 1 111 VAL n 1 112 VAL n 1 113 PRO n 1 114 TRP n 1 115 LEU n 1 116 GLN n 1 117 HIS n 1 118 PHE n 1 119 GLU n 1 120 VAL n 1 121 PRO n 1 122 VAL n 1 123 LEU n 1 124 ARG n 1 125 CYS n 1 126 HIS n 1 127 HIS n 1 128 HIS n 1 129 HIS n 1 130 HIS n 1 131 HIS n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name HUMAN _entity_src_nat.pdbx_organism_scientific 'HOMO SAPIENS' _entity_src_nat.pdbx_ncbi_taxonomy_id 9606 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CYTF_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession O76096 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2CH9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 126 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O76096 _struct_ref_seq.db_align_beg 20 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 145 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 20 _struct_ref_seq.pdbx_auth_seq_align_end 145 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2CH9 HIS A 127 ? UNP O76096 ? ? 'expression tag' 146 1 1 2CH9 HIS A 128 ? UNP O76096 ? ? 'expression tag' 147 2 1 2CH9 HIS A 129 ? UNP O76096 ? ? 'expression tag' 148 3 1 2CH9 HIS A 130 ? UNP O76096 ? ? 'expression tag' 149 4 1 2CH9 HIS A 131 ? UNP O76096 ? ? 'expression tag' 150 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUL 'L-saccharide, beta linking' . beta-L-fucopyranose 6-DEOXY-BETA-L-GALACTOSE 'C6 H12 O5' 164.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 2CH9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.5 _exptl_crystal.density_percent_sol 72.4 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.60 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '9% PEG 3350, 180 MM ZN ACETATE / ACETIC ACID PH 4.6 .' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2005-02-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.2809 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM14 _diffrn_source.pdbx_wavelength 1.2809 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2CH9 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 2.10 _reflns.number_obs 15732 _reflns.number_all ? _reflns.percent_possible_obs 97.3 _reflns.pdbx_Rmerge_I_obs 0.090 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 24.20 _reflns.B_iso_Wilson_estimate 53.80 _reflns.pdbx_redundancy 13.0 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.15 _reflns_shell.percent_possible_all 75.1 _reflns_shell.Rmerge_I_obs 0.490 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.10 _reflns_shell.pdbx_redundancy 7.20 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2CH9 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 14911 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.00 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.218 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.217 _refine.ls_R_factor_R_free 0.241 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 784 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.955 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.B_iso_mean 57.18 _refine.aniso_B[1][1] 2.00000 _refine.aniso_B[2][2] 2.00000 _refine.aniso_B[3][3] -3.99000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.157 _refine.pdbx_overall_ESU_R_Free 0.144 _refine.overall_SU_ML 0.134 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 11.959 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1038 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 61 _refine_hist.number_atoms_solvent 65 _refine_hist.number_atoms_total 1164 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 15.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.021 ? 1147 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.464 1.977 ? 1533 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.972 5.000 ? 125 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.458 23.585 ? 53 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.717 15.000 ? 192 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 23.536 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.094 0.200 ? 179 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 820 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.199 0.200 ? 394 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.305 0.200 ? 752 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.126 0.200 ? 47 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.121 0.200 ? 1 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.362 0.200 ? 39 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.118 0.200 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined 0.021 0.200 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.593 1.500 ? 655 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.963 2.000 ? 1038 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.720 3.000 ? 535 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 2.603 4.500 ? 495 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.16 _refine_ls_shell.number_reflns_R_work 823 _refine_ls_shell.R_factor_R_work 0.2990 _refine_ls_shell.percent_reflns_obs 100.0 _refine_ls_shell.R_factor_R_free 0.3080 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 42 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2CH9 _struct.title 'Crystal structure of dimeric human cystatin F' _struct.pdbx_descriptor 'CYSTATIN F' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CH9 _struct_keywords.pdbx_keywords INHIBITOR _struct_keywords.text 'INHIBITOR, CYSTEINE PROTEASE INHIBITOR, GLYCOPROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 5 ? J N N 6 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 27 ? THR A 45 ? ASP A 46 THR A 64 1 ? 19 HELX_P HELX_P2 2 ARG A 87 ? CYS A 91 ? ARG A 106 CYS A 110 5 ? 5 HELX_P HELX_P3 3 PRO A 113 ? GLN A 116 ? PRO A 132 GLN A 135 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 44 SG ? ? A CYS 26 A CYS 63 7_556 ? ? ? ? ? ? ? 2.082 ? ? disulf2 disulf ? ? A CYS 80 SG ? ? ? 1_555 A CYS 91 SG ? ? A CYS 99 A CYS 110 1_555 ? ? ? ? ? ? ? 2.052 ? ? disulf3 disulf ? ? A CYS 105 SG ? ? ? 1_555 A CYS 125 SG ? ? A CYS 124 A CYS 144 1_555 ? ? ? ? ? ? ? 2.079 ? ? covale1 covale one ? A ASN 43 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 62 B NAG 1 1_555 ? ? ? ? ? ? ? 1.451 ? N-Glycosylation covale2 covale one ? A ASN 96 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 115 A NAG 1154 1_555 ? ? ? ? ? ? ? 1.452 ? N-Glycosylation covale3 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.451 ? ? covale4 covale both ? B NAG . O6 ? ? ? 1_555 B FUL . C1 ? ? B NAG 1 B FUL 3 1_555 ? ? ? ? ? ? ? 1.435 ? ? metalc1 metalc ? ? A HIS 85 ND1 ? ? ? 1_555 F ZN . ZN ? ? A HIS 104 A ZN 1157 1_555 ? ? ? ? ? ? ? 2.057 ? ? metalc2 metalc ? ? A ASP 90 OD1 ? ? ? 3_555 D ZN . ZN ? ? A ASP 109 A ZN 1155 1_555 ? ? ? ? ? ? ? 1.999 ? ? metalc3 metalc ? ? A ASP 92 OD2 ? ? ? 1_555 H ZN . ZN ? ? A ASP 111 A ZN 1159 1_555 ? ? ? ? ? ? ? 2.010 ? ? metalc4 metalc ? ? A ASP 92 OD1 ? ? ? 1_555 H ZN . ZN ? ? A ASP 111 A ZN 1159 1_555 ? ? ? ? ? ? ? 2.016 ? ? metalc5 metalc ? ? A HIS 117 ND1 ? ? ? 1_555 G ZN . ZN ? ? A HIS 136 A ZN 1158 1_555 ? ? ? ? ? ? ? 2.052 ? ? metalc6 metalc ? ? A HIS 126 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 145 A ZN 1155 1_555 ? ? ? ? ? ? ? 2.062 ? ? metalc7 metalc ? ? A HIS 127 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 146 A ZN 1156 1_555 ? ? ? ? ? ? ? 2.046 ? ? metalc8 metalc ? ? A HIS 128 ND1 ? ? ? 1_555 D ZN . ZN ? ? A HIS 147 A ZN 1155 1_555 ? ? ? ? ? ? ? 2.056 ? ? metalc9 metalc ? ? A HIS 129 ND1 ? ? ? 4_454 H ZN . ZN ? ? A HIS 148 A ZN 1159 1_555 ? ? ? ? ? ? ? 2.055 ? ? metalc10 metalc ? ? A HIS 130 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 149 A ZN 1156 1_555 ? ? ? ? ? ? ? 2.033 ? ? metalc11 metalc ? ? A HIS 131 NE2 ? ? ? 4_454 H ZN . ZN ? ? A HIS 150 A ZN 1159 1_555 ? ? ? ? ? ? ? 2.041 ? ? metalc12 metalc ? ? D ZN . ZN ? ? ? 1_555 J HOH . O ? ? A ZN 1155 A HOH 2058 1_555 ? ? ? ? ? ? ? 2.229 ? ? metalc13 metalc ? ? E ZN . ZN ? ? ? 1_555 J HOH . O ? ? A ZN 1156 A HOH 2059 1_555 ? ? ? ? ? ? ? 2.208 ? ? metalc14 metalc ? ? F ZN . ZN ? ? ? 1_555 J HOH . O ? ? A ZN 1157 A HOH 2060 1_555 ? ? ? ? ? ? ? 1.900 ? ? metalc15 metalc ? ? F ZN . ZN ? ? ? 1_555 J HOH . O ? ? A ZN 1157 A HOH 2061 1_555 ? ? ? ? ? ? ? 2.134 ? ? metalc16 metalc ? ? F ZN . ZN ? ? ? 1_555 J HOH . O ? ? A ZN 1157 A HOH 2062 1_555 ? ? ? ? ? ? ? 2.151 ? ? metalc17 metalc ? ? G ZN . ZN ? ? ? 1_555 J HOH . O ? ? A ZN 1158 A HOH 2063 1_555 ? ? ? ? ? ? ? 2.162 ? ? metalc18 metalc ? ? G ZN . ZN ? ? ? 1_555 J HOH . O ? ? A ZN 1158 A HOH 2064 1_555 ? ? ? ? ? ? ? 2.233 ? ? metalc19 metalc ? ? H ZN . ZN ? ? ? 1_555 J HOH . O ? ? A ZN 1159 A HOH 2065 1_555 ? ? ? ? ? ? ? 2.206 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LYS A 21 ? THR A 22 ? LYS A 40 THR A 41 AA 2 PHE A 49 ? ILE A 63 ? PHE A 68 ILE A 82 AA 3 LEU A 67 ? LYS A 81 ? LEU A 86 LYS A 100 AA 4 THR A 102 ? VAL A 112 ? THR A 121 VAL A 131 AA 5 HIS A 117 ? HIS A 126 ? HIS A 136 HIS A 145 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LYS A 21 ? N LYS A 40 O VAL A 61 ? O VAL A 80 AA 2 3 N GLN A 62 ? N GLN A 81 O LYS A 68 ? O LYS A 87 AA 3 4 N ILE A 75 ? N ILE A 94 O LEU A 103 ? O LEU A 122 AA 4 5 N VAL A 112 ? N VAL A 131 O HIS A 117 ? O HIS A 136 # _database_PDB_matrix.entry_id 2CH9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2CH9 _atom_sites.fract_transf_matrix[1][1] 0.015303 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015303 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008118 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 20 ? ? ? A . n A 1 2 PRO 2 21 ? ? ? A . n A 1 3 SER 3 22 ? ? ? A . n A 1 4 PRO 4 23 ? ? ? A . n A 1 5 ASP 5 24 ? ? ? A . n A 1 6 THR 6 25 25 THR THR A . n A 1 7 CYS 7 26 26 CYS CYS A . n A 1 8 SER 8 27 27 SER SER A . n A 1 9 GLN 9 28 28 GLN GLN A . n A 1 10 ASP 10 29 29 ASP ASP A . n A 1 11 LEU 11 30 30 LEU LEU A . n A 1 12 ASN 12 31 31 ASN ASN A . n A 1 13 SER 13 32 32 SER SER A . n A 1 14 ARG 14 33 33 ARG ARG A . n A 1 15 VAL 15 34 34 VAL VAL A . n A 1 16 LYS 16 35 35 LYS LYS A . n A 1 17 PRO 17 36 36 PRO PRO A . n A 1 18 GLY 18 37 37 GLY GLY A . n A 1 19 PHE 19 38 38 PHE PHE A . n A 1 20 PRO 20 39 39 PRO PRO A . n A 1 21 LYS 21 40 40 LYS LYS A . n A 1 22 THR 22 41 41 THR THR A . n A 1 23 ILE 23 42 42 ILE ILE A . n A 1 24 LYS 24 43 43 LYS LYS A . n A 1 25 THR 25 44 44 THR THR A . n A 1 26 ASN 26 45 45 ASN ASN A . n A 1 27 ASP 27 46 46 ASP ASP A . n A 1 28 PRO 28 47 47 PRO PRO A . n A 1 29 GLY 29 48 48 GLY GLY A . n A 1 30 VAL 30 49 49 VAL VAL A . n A 1 31 LEU 31 50 50 LEU LEU A . n A 1 32 GLN 32 51 51 GLN GLN A . n A 1 33 ALA 33 52 52 ALA ALA A . n A 1 34 ALA 34 53 53 ALA ALA A . n A 1 35 ARG 35 54 54 ARG ARG A . n A 1 36 TYR 36 55 55 TYR TYR A . n A 1 37 SER 37 56 56 SER SER A . n A 1 38 VAL 38 57 57 VAL VAL A . n A 1 39 GLU 39 58 58 GLU GLU A . n A 1 40 LYS 40 59 59 LYS LYS A . n A 1 41 PHE 41 60 60 PHE PHE A . n A 1 42 ASN 42 61 61 ASN ASN A . n A 1 43 ASN 43 62 62 ASN ASN A . n A 1 44 CYS 44 63 63 CYS CYS A . n A 1 45 THR 45 64 64 THR THR A . n A 1 46 ASN 46 65 65 ASN ASN A . n A 1 47 ASP 47 66 66 ASP ASP A . n A 1 48 MET 48 67 67 MET MET A . n A 1 49 PHE 49 68 68 PHE PHE A . n A 1 50 LEU 50 69 69 LEU LEU A . n A 1 51 PHE 51 70 70 PHE PHE A . n A 1 52 LYS 52 71 71 LYS LYS A . n A 1 53 GLU 53 72 72 GLU GLU A . n A 1 54 SER 54 73 73 SER SER A . n A 1 55 ARG 55 74 74 ARG ARG A . n A 1 56 ILE 56 75 75 ILE ILE A . n A 1 57 THR 57 76 76 THR THR A . n A 1 58 ARG 58 77 77 ARG ARG A . n A 1 59 ALA 59 78 78 ALA ALA A . n A 1 60 LEU 60 79 79 LEU LEU A . n A 1 61 VAL 61 80 80 VAL VAL A . n A 1 62 GLN 62 81 81 GLN GLN A . n A 1 63 ILE 63 82 82 ILE ILE A . n A 1 64 VAL 64 83 83 VAL VAL A . n A 1 65 LYS 65 84 84 LYS LYS A . n A 1 66 GLY 66 85 85 GLY GLY A . n A 1 67 LEU 67 86 86 LEU LEU A . n A 1 68 LYS 68 87 87 LYS LYS A . n A 1 69 TYR 69 88 88 TYR TYR A . n A 1 70 MET 70 89 89 MET MET A . n A 1 71 LEU 71 90 90 LEU LEU A . n A 1 72 GLU 72 91 91 GLU GLU A . n A 1 73 VAL 73 92 92 VAL VAL A . n A 1 74 GLU 74 93 93 GLU GLU A . n A 1 75 ILE 75 94 94 ILE ILE A . n A 1 76 GLY 76 95 95 GLY GLY A . n A 1 77 ARG 77 96 96 ARG ARG A . n A 1 78 THR 78 97 97 THR THR A . n A 1 79 THR 79 98 98 THR THR A . n A 1 80 CYS 80 99 99 CYS CYS A . n A 1 81 LYS 81 100 100 LYS LYS A . n A 1 82 LYS 82 101 101 LYS LYS A . n A 1 83 ASN 83 102 102 ASN ASN A . n A 1 84 GLN 84 103 103 GLN GLN A . n A 1 85 HIS 85 104 104 HIS HIS A . n A 1 86 LEU 86 105 105 LEU LEU A . n A 1 87 ARG 87 106 106 ARG ARG A . n A 1 88 LEU 88 107 107 LEU LEU A . n A 1 89 ASP 89 108 108 ASP ASP A . n A 1 90 ASP 90 109 109 ASP ASP A . n A 1 91 CYS 91 110 110 CYS CYS A . n A 1 92 ASP 92 111 111 ASP ASP A . n A 1 93 PHE 93 112 112 PHE PHE A . n A 1 94 GLN 94 113 113 GLN GLN A . n A 1 95 THR 95 114 114 THR THR A . n A 1 96 ASN 96 115 115 ASN ASN A . n A 1 97 HIS 97 116 116 HIS HIS A . n A 1 98 THR 98 117 117 THR THR A . n A 1 99 LEU 99 118 118 LEU LEU A . n A 1 100 LYS 100 119 119 LYS LYS A . n A 1 101 GLN 101 120 120 GLN GLN A . n A 1 102 THR 102 121 121 THR THR A . n A 1 103 LEU 103 122 122 LEU LEU A . n A 1 104 SER 104 123 123 SER SER A . n A 1 105 CYS 105 124 124 CYS CYS A . n A 1 106 TYR 106 125 125 TYR TYR A . n A 1 107 SER 107 126 126 SER SER A . n A 1 108 GLU 108 127 127 GLU GLU A . n A 1 109 VAL 109 128 128 VAL VAL A . n A 1 110 TRP 110 129 129 TRP TRP A . n A 1 111 VAL 111 130 130 VAL VAL A . n A 1 112 VAL 112 131 131 VAL VAL A . n A 1 113 PRO 113 132 132 PRO PRO A . n A 1 114 TRP 114 133 133 TRP TRP A . n A 1 115 LEU 115 134 134 LEU LEU A . n A 1 116 GLN 116 135 135 GLN GLN A . n A 1 117 HIS 117 136 136 HIS HIS A . n A 1 118 PHE 118 137 137 PHE PHE A . n A 1 119 GLU 119 138 138 GLU GLU A . n A 1 120 VAL 120 139 139 VAL VAL A . n A 1 121 PRO 121 140 140 PRO PRO A . n A 1 122 VAL 122 141 141 VAL VAL A . n A 1 123 LEU 123 142 142 LEU LEU A . n A 1 124 ARG 124 143 143 ARG ARG A . n A 1 125 CYS 125 144 144 CYS CYS A . n A 1 126 HIS 126 145 145 HIS HIS A . n A 1 127 HIS 127 146 146 HIS HIS A . n A 1 128 HIS 128 147 147 HIS HIS A . n A 1 129 HIS 129 148 148 HIS HIS A . n A 1 130 HIS 130 149 149 HIS HIS A . n A 1 131 HIS 131 150 150 HIS HIS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 1154 1154 NAG NAG A . D 4 ZN 1 1155 1155 ZN ZN A . E 4 ZN 1 1156 1156 ZN ZN A . F 4 ZN 1 1157 1157 ZN ZN A . G 4 ZN 1 1158 1158 ZN ZN A . H 4 ZN 1 1159 1159 ZN ZN A . I 5 ACT 1 1160 1160 ACT ACT A . J 6 HOH 1 2001 2001 HOH HOH A . J 6 HOH 2 2002 2002 HOH HOH A . J 6 HOH 3 2003 2003 HOH HOH A . J 6 HOH 4 2004 2004 HOH HOH A . J 6 HOH 5 2005 2005 HOH HOH A . J 6 HOH 6 2006 2006 HOH HOH A . J 6 HOH 7 2007 2007 HOH HOH A . J 6 HOH 8 2008 2008 HOH HOH A . J 6 HOH 9 2009 2009 HOH HOH A . J 6 HOH 10 2010 2010 HOH HOH A . J 6 HOH 11 2011 2011 HOH HOH A . J 6 HOH 12 2012 2012 HOH HOH A . J 6 HOH 13 2013 2013 HOH HOH A . J 6 HOH 14 2014 2014 HOH HOH A . J 6 HOH 15 2015 2015 HOH HOH A . J 6 HOH 16 2016 2016 HOH HOH A . J 6 HOH 17 2017 2017 HOH HOH A . J 6 HOH 18 2018 2018 HOH HOH A . J 6 HOH 19 2019 2019 HOH HOH A . J 6 HOH 20 2020 2020 HOH HOH A . J 6 HOH 21 2021 2021 HOH HOH A . J 6 HOH 22 2022 2022 HOH HOH A . J 6 HOH 23 2023 2023 HOH HOH A . J 6 HOH 24 2024 2024 HOH HOH A . J 6 HOH 25 2025 2025 HOH HOH A . J 6 HOH 26 2026 2026 HOH HOH A . J 6 HOH 27 2027 2027 HOH HOH A . J 6 HOH 28 2028 2028 HOH HOH A . J 6 HOH 29 2029 2029 HOH HOH A . J 6 HOH 30 2030 2030 HOH HOH A . J 6 HOH 31 2031 2031 HOH HOH A . J 6 HOH 32 2032 2032 HOH HOH A . J 6 HOH 33 2033 2033 HOH HOH A . J 6 HOH 34 2034 2034 HOH HOH A . J 6 HOH 35 2035 2035 HOH HOH A . J 6 HOH 36 2036 2036 HOH HOH A . J 6 HOH 37 2037 2037 HOH HOH A . J 6 HOH 38 2038 2038 HOH HOH A . J 6 HOH 39 2039 2039 HOH HOH A . J 6 HOH 40 2040 2040 HOH HOH A . J 6 HOH 41 2041 2041 HOH HOH A . J 6 HOH 42 2042 2042 HOH HOH A . J 6 HOH 43 2043 2043 HOH HOH A . J 6 HOH 44 2044 2044 HOH HOH A . J 6 HOH 45 2045 2045 HOH HOH A . J 6 HOH 46 2046 2046 HOH HOH A . J 6 HOH 47 2047 2047 HOH HOH A . J 6 HOH 48 2048 2048 HOH HOH A . J 6 HOH 49 2049 2049 HOH HOH A . J 6 HOH 50 2050 2050 HOH HOH A . J 6 HOH 51 2051 2051 HOH HOH A . J 6 HOH 52 2052 2052 HOH HOH A . J 6 HOH 53 2053 2053 HOH HOH A . J 6 HOH 54 2054 2054 HOH HOH A . J 6 HOH 55 2055 2055 HOH HOH A . J 6 HOH 56 2056 2056 HOH HOH A . J 6 HOH 57 2057 2057 HOH HOH A . J 6 HOH 58 2058 2058 HOH HOH A . J 6 HOH 59 2059 2059 HOH HOH A . J 6 HOH 60 2060 2060 HOH HOH A . J 6 HOH 61 2061 2061 HOH HOH A . J 6 HOH 62 2062 2062 HOH HOH A . J 6 HOH 63 2063 2063 HOH HOH A . J 6 HOH 64 2064 2064 HOH HOH A . J 6 HOH 65 2065 2065 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 43 A ASN 62 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 96 A ASN 115 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7010 ? 1 MORE -236.4 ? 1 'SSA (A^2)' 15050 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 123.1830000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2050 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id J _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 ND1 ? A HIS 85 ? A HIS 104 ? 1_555 ZN ? F ZN . ? A ZN 1157 ? 1_555 O ? J HOH . ? A HOH 2060 ? 1_555 113.8 ? 2 ND1 ? A HIS 85 ? A HIS 104 ? 1_555 ZN ? F ZN . ? A ZN 1157 ? 1_555 O ? J HOH . ? A HOH 2061 ? 1_555 116.0 ? 3 O ? J HOH . ? A HOH 2060 ? 1_555 ZN ? F ZN . ? A ZN 1157 ? 1_555 O ? J HOH . ? A HOH 2061 ? 1_555 86.1 ? 4 ND1 ? A HIS 85 ? A HIS 104 ? 1_555 ZN ? F ZN . ? A ZN 1157 ? 1_555 O ? J HOH . ? A HOH 2062 ? 1_555 85.6 ? 5 O ? J HOH . ? A HOH 2060 ? 1_555 ZN ? F ZN . ? A ZN 1157 ? 1_555 O ? J HOH . ? A HOH 2062 ? 1_555 113.4 ? 6 O ? J HOH . ? A HOH 2061 ? 1_555 ZN ? F ZN . ? A ZN 1157 ? 1_555 O ? J HOH . ? A HOH 2062 ? 1_555 143.1 ? 7 OD1 ? A ASP 90 ? A ASP 109 ? 3_555 ZN ? D ZN . ? A ZN 1155 ? 1_555 NE2 ? A HIS 126 ? A HIS 145 ? 1_555 99.7 ? 8 OD1 ? A ASP 90 ? A ASP 109 ? 3_555 ZN ? D ZN . ? A ZN 1155 ? 1_555 ND1 ? A HIS 128 ? A HIS 147 ? 1_555 91.2 ? 9 NE2 ? A HIS 126 ? A HIS 145 ? 1_555 ZN ? D ZN . ? A ZN 1155 ? 1_555 ND1 ? A HIS 128 ? A HIS 147 ? 1_555 114.6 ? 10 OD1 ? A ASP 90 ? A ASP 109 ? 3_555 ZN ? D ZN . ? A ZN 1155 ? 1_555 O ? J HOH . ? A HOH 2058 ? 1_555 157.4 ? 11 NE2 ? A HIS 126 ? A HIS 145 ? 1_555 ZN ? D ZN . ? A ZN 1155 ? 1_555 O ? J HOH . ? A HOH 2058 ? 1_555 93.7 ? 12 ND1 ? A HIS 128 ? A HIS 147 ? 1_555 ZN ? D ZN . ? A ZN 1155 ? 1_555 O ? J HOH . ? A HOH 2058 ? 1_555 99.6 ? 13 OD2 ? A ASP 92 ? A ASP 111 ? 1_555 ZN ? H ZN . ? A ZN 1159 ? 1_555 OD1 ? A ASP 92 ? A ASP 111 ? 1_555 65.4 ? 14 OD2 ? A ASP 92 ? A ASP 111 ? 1_555 ZN ? H ZN . ? A ZN 1159 ? 1_555 ND1 ? A HIS 129 ? A HIS 148 ? 4_454 116.6 ? 15 OD1 ? A ASP 92 ? A ASP 111 ? 1_555 ZN ? H ZN . ? A ZN 1159 ? 1_555 ND1 ? A HIS 129 ? A HIS 148 ? 4_454 152.4 ? 16 OD2 ? A ASP 92 ? A ASP 111 ? 1_555 ZN ? H ZN . ? A ZN 1159 ? 1_555 NE2 ? A HIS 131 ? A HIS 150 ? 4_454 113.2 ? 17 OD1 ? A ASP 92 ? A ASP 111 ? 1_555 ZN ? H ZN . ? A ZN 1159 ? 1_555 NE2 ? A HIS 131 ? A HIS 150 ? 4_454 85.3 ? 18 ND1 ? A HIS 129 ? A HIS 148 ? 4_454 ZN ? H ZN . ? A ZN 1159 ? 1_555 NE2 ? A HIS 131 ? A HIS 150 ? 4_454 115.6 ? 19 OD2 ? A ASP 92 ? A ASP 111 ? 1_555 ZN ? H ZN . ? A ZN 1159 ? 1_555 O ? J HOH . ? A HOH 2065 ? 1_555 121.3 ? 20 OD1 ? A ASP 92 ? A ASP 111 ? 1_555 ZN ? H ZN . ? A ZN 1159 ? 1_555 O ? J HOH . ? A HOH 2065 ? 1_555 69.8 ? 21 ND1 ? A HIS 129 ? A HIS 148 ? 4_454 ZN ? H ZN . ? A ZN 1159 ? 1_555 O ? J HOH . ? A HOH 2065 ? 1_555 88.5 ? 22 NE2 ? A HIS 131 ? A HIS 150 ? 4_454 ZN ? H ZN . ? A ZN 1159 ? 1_555 O ? J HOH . ? A HOH 2065 ? 1_555 98.5 ? 23 ND1 ? A HIS 117 ? A HIS 136 ? 1_555 ZN ? G ZN . ? A ZN 1158 ? 1_555 O ? J HOH . ? A HOH 2063 ? 1_555 85.0 ? 24 ND1 ? A HIS 117 ? A HIS 136 ? 1_555 ZN ? G ZN . ? A ZN 1158 ? 1_555 O ? J HOH . ? A HOH 2064 ? 1_555 110.2 ? 25 O ? J HOH . ? A HOH 2063 ? 1_555 ZN ? G ZN . ? A ZN 1158 ? 1_555 O ? J HOH . ? A HOH 2064 ? 1_555 164.3 ? 26 NE2 ? A HIS 127 ? A HIS 146 ? 1_555 ZN ? E ZN . ? A ZN 1156 ? 1_555 NE2 ? A HIS 130 ? A HIS 149 ? 1_555 100.0 ? 27 NE2 ? A HIS 127 ? A HIS 146 ? 1_555 ZN ? E ZN . ? A ZN 1156 ? 1_555 O ? J HOH . ? A HOH 2059 ? 1_555 117.2 ? 28 NE2 ? A HIS 130 ? A HIS 149 ? 1_555 ZN ? E ZN . ? A ZN 1156 ? 1_555 O ? J HOH . ? A HOH 2059 ? 1_555 138.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-04-04 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' Advisory 4 3 'Structure model' 'Atomic model' 5 3 'Structure model' 'Data collection' 6 3 'Structure model' 'Derived calculations' 7 3 'Structure model' Other 8 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' pdbx_branch_scheme 5 3 'Structure model' pdbx_chem_comp_identifier 6 3 'Structure model' pdbx_database_status 7 3 'Structure model' pdbx_entity_branch 8 3 'Structure model' pdbx_entity_branch_descriptor 9 3 'Structure model' pdbx_entity_branch_link 10 3 'Structure model' pdbx_entity_branch_list 11 3 'Structure model' pdbx_entity_nonpoly 12 3 'Structure model' pdbx_nonpoly_scheme 13 3 'Structure model' pdbx_struct_assembly_gen 14 3 'Structure model' pdbx_struct_conn_angle 15 3 'Structure model' pdbx_struct_special_symmetry 16 3 'Structure model' pdbx_validate_close_contact 17 3 'Structure model' struct_asym 18 3 'Structure model' struct_conn 19 3 'Structure model' struct_site 20 3 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_asym_id' 6 3 'Structure model' '_atom_site.auth_atom_id' 7 3 'Structure model' '_atom_site.auth_comp_id' 8 3 'Structure model' '_atom_site.auth_seq_id' 9 3 'Structure model' '_atom_site.label_asym_id' 10 3 'Structure model' '_atom_site.label_atom_id' 11 3 'Structure model' '_atom_site.label_comp_id' 12 3 'Structure model' '_atom_site.label_entity_id' 13 3 'Structure model' '_atom_site.type_symbol' 14 3 'Structure model' '_chem_comp.name' 15 3 'Structure model' '_chem_comp.type' 16 3 'Structure model' '_entity.formula_weight' 17 3 'Structure model' '_entity.pdbx_description' 18 3 'Structure model' '_entity.pdbx_number_of_molecules' 19 3 'Structure model' '_entity.type' 20 3 'Structure model' '_pdbx_database_status.status_code_sf' 21 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 22 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 23 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 24 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 25 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 26 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 27 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 28 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 29 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 30 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 31 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 32 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 33 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 34 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 35 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 36 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 37 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 38 3 'Structure model' '_pdbx_struct_conn_angle.value' 39 3 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 40 3 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_1' 41 3 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_2' 42 3 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_1' 43 3 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2' 44 3 'Structure model' '_struct_conn.pdbx_dist_value' 45 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 46 3 'Structure model' '_struct_conn.pdbx_role' 47 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 48 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 49 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 50 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 51 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 52 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 53 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 54 3 'Structure model' '_struct_conn.ptnr1_symmetry' 55 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 56 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 57 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 58 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 59 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 60 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 61 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 62 3 'Structure model' '_struct_conn.ptnr2_symmetry' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -0.4870 _pdbx_refine_tls.origin_y 18.7880 _pdbx_refine_tls.origin_z 56.9990 _pdbx_refine_tls.T[1][1] -0.1672 _pdbx_refine_tls.T[2][2] -0.0026 _pdbx_refine_tls.T[3][3] -0.2234 _pdbx_refine_tls.T[1][2] -0.588 _pdbx_refine_tls.T[1][3] -0.0960 _pdbx_refine_tls.T[2][3] 0.0999 _pdbx_refine_tls.L[1][1] 7.6382 _pdbx_refine_tls.L[2][2] 3.8670 _pdbx_refine_tls.L[3][3] 3.6770 _pdbx_refine_tls.L[1][2] -4.2031 _pdbx_refine_tls.L[1][3] -0.1333 _pdbx_refine_tls.L[2][3] -0.8928 _pdbx_refine_tls.S[1][1] -0.1309 _pdbx_refine_tls.S[1][2] 0.4659 _pdbx_refine_tls.S[1][3] 0.2425 _pdbx_refine_tls.S[2][1] 0.3490 _pdbx_refine_tls.S[2][2] -0.0797 _pdbx_refine_tls.S[2][3] -0.0277 _pdbx_refine_tls.S[3][1] -0.2341 _pdbx_refine_tls.S[3][2] -0.5920 _pdbx_refine_tls.S[3][3] 0.2106 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 25 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 150 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0018 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SHELX phasing . ? 4 # _pdbx_entry_details.entry_id 2CH9 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;MATURE PROTEIN LACKING SIGNAL SEQUENCE, BUT INCLUDING C- TERMINAL PENTAHISTIDINE TAG. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 C6 _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 NAG _pdbx_validate_close_contact.auth_seq_id_1 1 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 C1 _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 FUL _pdbx_validate_close_contact.auth_seq_id_2 3 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.15 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 26 ? ? -93.45 50.81 2 1 SER A 27 ? ? -90.99 54.54 3 1 HIS A 149 ? ? -82.85 39.90 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 20 ? A GLY 1 2 1 Y 1 A PRO 21 ? A PRO 2 3 1 Y 1 A SER 22 ? A SER 3 4 1 Y 1 A PRO 23 ? A PRO 4 5 1 Y 1 A ASP 24 ? A ASP 5 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 1151 n B 2 NAG 2 B NAG 2 A NAG 1153 n B 2 FUL 3 B FUL 3 A FUL 1152 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FUL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpb FUL 'COMMON NAME' GMML 1.0 b-L-fucopyranose FUL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-L-Fucp FUL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DGlcpNAcb1-4[LFucpb1-6]DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1b_1-5]/1-1-2/a4-b1_a6-c1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}[(6+1)][b-L-Fucp]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 FUL C1 O1 1 NAG O6 HO6 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 FUL 3 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 'ZINC ION' ZN 5 'ACETATE ION' ACT 6 water HOH #