HEADER OXIDOREDUCTASE 26-MAR-06 2CIV TITLE CHLOROPEROXIDASE BROMIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHLOROPEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 21-319; COMPND 5 SYNONYM: CHLORIDE PEROXIDASE, CPO; COMPND 6 EC: 1.11.1.10 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CALDARIOMYCES FUMAGO; SOURCE 3 ORGANISM_TAXID: 5474; SOURCE 4 OTHER_DETAILS: LEPTOXYPHIUM FUMAGO KEYWDS OXIDOREDUCTASE, HEME, IRON, CHLORIDE, MANGANESE, PEROXIDASE, KEYWDS 2 PYRROLIDONE CARBOXYLIC ACID, GLYCOPROTEIN, METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR K.KUHNEL,W.BLANKENFELDT,J.TERNER,I.SCHLICHTING REVDAT 7 23-OCT-24 2CIV 1 REMARK REVDAT 6 13-DEC-23 2CIV 1 HETSYN REVDAT 5 29-JUL-20 2CIV 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 11-MAR-20 2CIV 1 SEQRES LINK REVDAT 3 24-FEB-09 2CIV 1 VERSN REVDAT 2 16-AUG-06 2CIV 1 JRNL REVDAT 1 12-JUN-06 2CIV 0 JRNL AUTH K.KUHNEL,W.BLANKENFELDT,J.TERNER,I.SCHLICHTING JRNL TITL CRYSTAL STRUCTURES OF CHLOROPEROXIDASE WITH ITS BOUND JRNL TITL 2 SUBSTRATES AND COMPLEXED WITH FORMATE, ACETATE, AND NITRATE. JRNL REF J.BIOL.CHEM. V. 281 23990 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16790441 JRNL DOI 10.1074/JBC.M603166200 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 38402 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2022 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2709 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1800 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2316 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 248 REMARK 3 SOLVENT ATOMS : 426 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : -1.01000 REMARK 3 B33 (A**2) : 0.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.099 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.752 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2713 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3757 ; 1.334 ; 2.085 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 308 ; 5.645 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;35.186 ;24.790 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 331 ;11.508 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;17.127 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 432 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2037 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1387 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1943 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 370 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.158 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.132 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1558 ; 0.698 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2488 ; 1.126 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1279 ; 1.843 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1263 ; 2.828 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2CIV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1290028294. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 3.60 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77290 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.11000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1CPO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22 % PEG3000, 0.1 M KBR, 0.1 M CITRATE REMARK 280 PH 3.6, PH 3.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.17500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.17500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.75000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 75.40000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.75000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 75.40000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.17500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.75000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 75.40000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.17500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.75000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 75.40000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2026 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2049 O HOH A 2089 1.82 REMARK 500 OE1 GLU A 1 O HOH A 2012 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 47 61.36 62.08 REMARK 500 ALA A 102 -112.43 -140.32 REMARK 500 PRO A 220 43.89 -78.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2010 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A2067 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A2081 DISTANCE = 5.88 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1300 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 29 SG REMARK 620 2 HEM A1300 NA 99.9 REMARK 620 3 HEM A1300 NB 100.3 87.7 REMARK 620 4 HEM A1300 NC 94.7 165.5 90.0 REMARK 620 5 HEM A1300 ND 96.1 89.5 163.6 88.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1299 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 104 OE2 REMARK 620 2 HIS A 105 O 82.7 REMARK 620 3 SER A 108 OG 176.9 98.2 REMARK 620 4 HEM A1300 O1A 102.9 84.4 80.1 REMARK 620 5 HOH A2388 O 87.4 166.9 92.1 89.5 REMARK 620 6 HOH A2389 O 90.3 90.6 86.7 165.1 98.0 REMARK 620 N 1 2 3 4 5 REMARK 630 REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE METABOLISM REMARK 630 MOLECULE NAME: ALPHA-D-MANNOPYRANOSE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 MAN A 1306 REMARK 630 MAN A 1307 REMARK 630 MAN A 1308 REMARK 630 MAN A 1309 REMARK 630 MAN A 1310 REMARK 630 MAN A 1311 REMARK 630 MAN A 1312 REMARK 630 MAN A 1313 REMARK 630 MAN A 1314 REMARK 630 MAN A 1317 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: OLIGOSACCHARIDE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CPO RELATED DB: PDB REMARK 900 CHLOROPEROXIDASE REMARK 900 RELATED ID: 2CIW RELATED DB: PDB REMARK 900 CHLOROPEROXIDASE IODIDE COMPLEX REMARK 900 RELATED ID: 2CIX RELATED DB: PDB REMARK 900 CHLOROPEROXIDASE COMPLEXED WITH CYCLOPENTANEDIONE REMARK 900 RELATED ID: 2CIY RELATED DB: PDB REMARK 900 CHLOROPEROXIDASE COMPLEXED WITH CYANIDE AND DMSO REMARK 900 RELATED ID: 2CIZ RELATED DB: PDB REMARK 900 CHLOROPEROXIDASE COMPLEXED WITH ACETATE REMARK 900 RELATED ID: 2CJ0 RELATED DB: PDB REMARK 900 CHLOROPEROXIDASE COMPLEXED WITH NITRATE REMARK 900 RELATED ID: 2CJ1 RELATED DB: PDB REMARK 900 CHLOROPEROXIDASE COMPLEXED WITH FORMATE (ETHYLENE GLYCOL REMARK 900 CRYOPROTECTANT) REMARK 900 RELATED ID: 2CJ2 RELATED DB: PDB REMARK 900 CHLOROPEROXIDASE COMPLEXED WITH FORMATE (SUGAR CRYOPROTECTANT) REMARK 900 RELATED ID: 2CPO RELATED DB: PDB REMARK 900 CHLOROPEROXIDASE DBREF 2CIV A 0 298 UNP P04963 PRXC_CALFU 21 319 SEQRES 1 A 299 PCA GLU PRO GLY SER GLY ILE GLY TYR PRO TYR ASP ASN SEQRES 2 A 299 ASN THR LEU PRO TYR VAL ALA PRO GLY PRO THR ASP SER SEQRES 3 A 299 ARG ALA PRO CYS PRO ALA LEU ASN ALA LEU ALA ASN HIS SEQRES 4 A 299 GLY TYR ILE PRO HIS ASP GLY ARG ALA ILE SER ARG GLU SEQRES 5 A 299 THR LEU GLN ASN ALA PHE LEU ASN HIS MET GLY ILE ALA SEQRES 6 A 299 ASN SER VAL ILE GLU LEU ALA LEU THR ASN ALA PHE VAL SEQRES 7 A 299 VAL CYS GLU TYR VAL THR GLY SER ASP CYS GLY ASP SER SEQRES 8 A 299 LEU VAL ASN LEU THR LEU LEU ALA GLU PRO HIS ALA PHE SEQRES 9 A 299 GLU HIS ASP HIS SER PHE SER ARG LYS ASP TYR LYS GLN SEQRES 10 A 299 GLY VAL ALA ASN SER ASN ASP PHE ILE ASP ASN ARG ASN SEQRES 11 A 299 PHE ASP ALA GLU THR PHE GLN THR SER LEU ASP VAL VAL SEQRES 12 A 299 ALA GLY LYS THR HIS PHE ASP TYR ALA ASP MET ASN GLU SEQRES 13 A 299 ILE ARG LEU GLN ARG GLU SER LEU SER ASN GLU LEU ASP SEQRES 14 A 299 PHE PRO GLY TRP PHE THR GLU SER LYS PRO ILE GLN ASN SEQRES 15 A 299 VAL GLU SER GLY PHE ILE PHE ALA LEU VAL SER ASP PHE SEQRES 16 A 299 ASN LEU PRO ASP ASN ASP GLU ASN PRO LEU VAL ARG ILE SEQRES 17 A 299 ASP TRP TRP LYS TYR TRP PHE THR ASN GLU SER PHE PRO SEQRES 18 A 299 TYR HIS LEU GLY TRP HIS PRO PRO SER PRO ALA ARG GLU SEQRES 19 A 299 ILE GLU PHE VAL THR SER ALA SER SER ALA VAL LEU ALA SEQRES 20 A 299 ALA SER VAL THR SER THR PRO SER SER LEU PRO SER GLY SEQRES 21 A 299 ALA ILE GLY PRO GLY ALA GLU ALA VAL PRO LEU SER PHE SEQRES 22 A 299 ALA SER THR MET THR PRO PHE LEU LEU ALA THR ASN ALA SEQRES 23 A 299 PRO TYR TYR ALA GLN ASP PRO THR LEU GLY PRO ASN ASP MODRES 2CIV ASN A 12 ASN GLYCOSYLATION SITE MODRES 2CIV ASN A 93 ASN GLYCOSYLATION SITE MODRES 2CIV ASN A 216 ASN GLYCOSYLATION SITE MODRES 2CIV THR A 238 THR GLYCOSYLATION SITE MODRES 2CIV SER A 239 SER GLYCOSYLATION SITE MODRES 2CIV SER A 241 SER GLYCOSYLATION SITE MODRES 2CIV SER A 242 SER GLYCOSYLATION SITE MODRES 2CIV THR A 250 THR GLYCOSYLATION SITE MODRES 2CIV SER A 251 SER GLYCOSYLATION SITE MODRES 2CIV THR A 252 THR GLYCOSYLATION SITE MODRES 2CIV SER A 271 SER GLYCOSYLATION SITE MODRES 2CIV THR A 277 THR GLYCOSYLATION SITE MODRES 2CIV THR A 283 THR GLYCOSYLATION SITE MODRES 2CIV THR A 293 THR GLYCOSYLATION SITE MODRES 2CIV PCA A 0 GLU PYROGLUTAMIC ACID HET PCA A 0 8 HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN C 1 11 HET MAN C 2 11 HET MN A1299 1 HET HEM A1300 43 HET NAG A1301 14 HET NAG A1305 14 HET MAN A1306 11 HET MAN A1307 11 HET MAN A1308 11 HET MAN A1309 22 HET MAN A1310 11 HET MAN A1311 11 HET MAN A1312 11 HET MAN A1313 11 HET MAN A1314 11 HET MAN A1317 11 HET BR A1318 1 HET BR A1319 1 HET BR A1320 1 HET BR A1321 1 HET BR A1322 1 HETNAM PCA PYROGLUTAMIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM MN MANGANESE (II) ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM BR BROMIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN HEM HEME FORMUL 1 PCA C5 H7 N O3 FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 3 MAN 12(C6 H12 O6) FORMUL 4 MN MN 2+ FORMUL 5 HEM C34 H32 FE N4 O4 FORMUL 18 BR 5(BR 1-) FORMUL 23 HOH *426(H2 O) HELIX 1 1 GLU A 1 GLY A 5 5 5 HELIX 2 2 CYS A 29 HIS A 38 1 10 HELIX 3 3 SER A 49 GLY A 62 1 14 HELIX 4 4 ALA A 64 GLY A 84 1 21 HELIX 5 5 THR A 95 GLU A 99 5 5 HELIX 6 6 ASP A 131 ASP A 140 1 10 HELIX 7 7 VAL A 141 ALA A 143 5 3 HELIX 8 8 ASP A 149 ASP A 168 1 20 HELIX 9 9 SER A 176 SER A 192 1 17 HELIX 10 10 ILE A 207 GLU A 217 1 11 HELIX 11 11 PRO A 220 GLY A 224 5 5 HELIX 12 12 GLU A 233 ALA A 247 1 15 SHEET 1 AA 2 ARG A 46 ILE A 48 0 SHEET 2 AA 2 LEU A 91 ASN A 93 -1 O LEU A 91 N ILE A 48 SHEET 1 AB 2 HIS A 147 PHE A 148 0 SHEET 2 AB 2 VAL A 205 ARG A 206 -1 O VAL A 205 N PHE A 148 SSBOND 1 CYS A 79 CYS A 87 1555 1555 2.08 LINK C PCA A 0 N AGLU A 1 1555 1555 1.33 LINK C PCA A 0 N BGLU A 1 1555 1555 1.33 LINK ND2 ASN A 12 C1 NAG A1301 1555 1555 1.44 LINK ND2 ASN A 93 C1 NAG B 1 1555 1555 1.43 LINK ND2 ASN A 216 C1 NAG A1305 1555 1555 1.45 LINK OG1 THR A 238 C1 MAN A1306 1555 1555 1.45 LINK OG SER A 239 C1 MAN A1307 1555 1555 1.44 LINK OG SER A 241 C1 MAN A1308 1555 1555 1.44 LINK OG ASER A 242 C1 AMAN A1309 1555 1555 1.44 LINK OG BSER A 242 C1 BMAN A1309 1555 1555 1.44 LINK OG1 THR A 250 C1 MAN A1310 1555 1555 1.45 LINK OG SER A 251 C1 MAN A1311 1555 1555 1.45 LINK OG1 THR A 252 C1 MAN A1312 1555 1555 1.44 LINK OG SER A 271 C1 MAN A1313 1555 1555 1.44 LINK OG1 THR A 277 C1 MAN A1314 1555 1555 1.45 LINK OG1 THR A 283 C1 MAN C 1 1555 1555 1.44 LINK OG1 THR A 293 C1 MAN A1317 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O2 MAN C 1 C1 MAN C 2 1555 1555 1.45 LINK SG CYS A 29 FE HEM A1300 1555 1555 2.37 LINK OE2 GLU A 104 MN MN A1299 1555 1555 2.19 LINK O HIS A 105 MN MN A1299 1555 1555 2.27 LINK OG SER A 108 MN MN A1299 1555 1555 2.24 LINK MN MN A1299 O1A HEM A1300 1555 1555 2.24 LINK MN MN A1299 O HOH A2388 1555 1555 2.22 LINK MN MN A1299 O HOH A2389 1555 1555 2.28 CISPEP 1 TYR A 8 PRO A 9 0 -0.37 CISPEP 2 SER A 229 PRO A 230 0 -0.02 CISPEP 3 ASP A 291 PRO A 292 0 3.24 CRYST1 57.500 150.800 100.350 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017391 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006631 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009965 0.00000 HETATM 1 N PCA A 0 7.217 15.623 17.803 1.00 10.68 N HETATM 2 CA PCA A 0 7.460 15.845 19.229 1.00 10.91 C HETATM 3 CB PCA A 0 6.393 16.811 19.756 1.00 11.73 C HETATM 4 CG PCA A 0 5.961 17.627 18.536 1.00 11.67 C HETATM 5 CD PCA A 0 6.420 16.765 17.386 1.00 11.09 C HETATM 6 OE PCA A 0 6.138 17.008 16.195 1.00 10.80 O HETATM 7 C PCA A 0 7.474 14.511 19.965 1.00 11.24 C HETATM 8 O PCA A 0 7.043 13.491 19.417 1.00 10.36 O