HEADER TRANSFERASE 01-APR-06 2CJG TITLE LYSINE AMINOTRANSFERASE FROM M. TUBERCULOSIS IN BOUND PMP FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-LYSINE-EPSILON AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: L-LYSINE AMINOTRANSFERASE, LYSINE 6-AMINOTRANSFERASE; COMPND 5 EC: 2.6.1.36; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS TRANSFERASE, INTERNAL ALDIMINE, PYRIDOXAL PHOSPHATE, PLP, RV3290C, KEYWDS 2 AMINOTRANSFERASE, LYSINE AMINO TRANSFERASE, MYCOBACTERIUM KEYWDS 3 TUBERCULOSIS EXPDTA X-RAY DIFFRACTION AUTHOR S.M.TRIPATHI,R.RAMACHANDRAN REVDAT 3 24-JAN-18 2CJG 1 SOURCE REVDAT 2 24-FEB-09 2CJG 1 VERSN REVDAT 1 14-AUG-06 2CJG 0 JRNL AUTH S.M.TRIPATHI,R.RAMACHANDRAN JRNL TITL DIRECT EVIDENCE FOR A GLUTAMATE SWITCH NECESSARY FOR JRNL TITL 2 SUBSTRATE RECOGNITION: CRYSTAL STRUCTURES OF LYSINE JRNL TITL 3 EPSILON-AMINOTRANSFERASE (RV3290C) FROM MYCOBACTERIUM JRNL TITL 4 TUBERCULOSIS H37RV. JRNL REF J.MOL.BIOL. V. 362 877 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16950391 JRNL DOI 10.1016/J.JMB.2006.08.019 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 89.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 42208 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2243 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3082 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 162 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3350 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 244 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.114 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.632 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3441 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4682 ; 1.544 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 434 ; 5.791 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;34.537 ;22.579 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 532 ;17.469 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;21.881 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 524 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2671 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1466 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2383 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 215 ; 0.122 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 72 ; 0.244 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.082 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2212 ; 0.888 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3475 ; 1.528 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1361 ; 2.627 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1207 ; 4.291 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUE 1-14 ARE DISORDERED. REMARK 4 REMARK 4 2CJG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-APR-06. REMARK 100 THE DEPOSITION ID IS D_1290028390. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 293.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44486 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 20.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 20.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.75533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.51067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.51067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.75533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 98.26600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 VAL A 4 REMARK 465 VAL A 5 REMARK 465 LYS A 6 REMARK 465 SER A 7 REMARK 465 VAL A 8 REMARK 465 ALA A 9 REMARK 465 LEU A 10 REMARK 465 ALA A 11 REMARK 465 GLY A 12 REMARK 465 ARG A 13 REMARK 465 PRO A 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 79 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 55 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 55 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 112 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 222 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 258 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 258 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 340 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 340 NE - CZ - NH2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ARG A 385 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 422 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 422 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 179 80.00 -151.95 REMARK 500 THR A 180 -90.34 -117.49 REMARK 500 LYS A 300 -102.33 54.58 REMARK 500 GLN A 303 -57.71 72.03 REMARK 500 ARG A 311 -118.96 44.73 REMARK 500 ASP A 318 40.39 -103.90 REMARK 500 ASP A 419 18.05 -144.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PMP A1450 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CIN RELATED DB: PDB REMARK 900 LYSINE AMINOTRANSFERASE FROM M. TUBERCULOSIS IN THE INTERNAL REMARK 900 ALDIMINE FORM REMARK 900 RELATED ID: 2CJD RELATED DB: PDB REMARK 900 LYSINE AMINOTRANSFERASE FROM M. TUBERCULOSIS IN EXTERNAL ALDIMINE REMARK 900 FORM REMARK 900 RELATED ID: 2CJH RELATED DB: PDB REMARK 900 LYSINE AMINOTRANSFERASE FROM M. TUBERCULOSIS IN THE INTERNAL REMARK 900 ALDIMINE FORM WITH BOUND SUBSTRATE 2-KETOGLUTARATE DBREF 2CJG A 1 449 UNP P63509 LAT_MYCTU 1 449 SEQRES 1 A 449 MET ALA ALA VAL VAL LYS SER VAL ALA LEU ALA GLY ARG SEQRES 2 A 449 PRO THR THR PRO ASP ARG VAL HIS GLU VAL LEU GLY ARG SEQRES 3 A 449 SER MET LEU VAL ASP GLY LEU ASP ILE VAL LEU ASP LEU SEQRES 4 A 449 THR ARG SER GLY GLY SER TYR LEU VAL ASP ALA ILE THR SEQRES 5 A 449 GLY ARG ARG TYR LEU ASP MET PHE THR PHE VAL ALA SER SEQRES 6 A 449 SER ALA LEU GLY MET ASN PRO PRO ALA LEU VAL ASP ASP SEQRES 7 A 449 ARG GLU PHE HIS ALA GLU LEU MET GLN ALA ALA LEU ASN SEQRES 8 A 449 LYS PRO SER ASN SER ASP VAL TYR SER VAL ALA MET ALA SEQRES 9 A 449 ARG PHE VAL GLU THR PHE ALA ARG VAL LEU GLY ASP PRO SEQRES 10 A 449 ALA LEU PRO HIS LEU PHE PHE VAL GLU GLY GLY ALA LEU SEQRES 11 A 449 ALA VAL GLU ASN ALA LEU LYS ALA ALA PHE ASP TRP LYS SEQRES 12 A 449 SER ARG HIS ASN GLN ALA HIS GLY ILE ASP PRO ALA LEU SEQRES 13 A 449 GLY THR GLN VAL LEU HIS LEU ARG GLY ALA PHE HIS GLY SEQRES 14 A 449 ARG SER GLY TYR THR LEU SER LEU THR ASN THR LYS PRO SEQRES 15 A 449 THR ILE THR ALA ARG PHE PRO LYS PHE ASP TRP PRO ARG SEQRES 16 A 449 ILE ASP ALA PRO TYR MET ARG PRO GLY LEU ASP GLU PRO SEQRES 17 A 449 ALA MET ALA ALA LEU GLU ALA GLU ALA LEU ARG GLN ALA SEQRES 18 A 449 ARG ALA ALA PHE GLU THR ARG PRO HIS ASP ILE ALA CYS SEQRES 19 A 449 PHE VAL ALA GLU PRO ILE GLN GLY GLU GLY GLY ASP ARG SEQRES 20 A 449 HIS PHE ARG PRO GLU PHE PHE ALA ALA MET ARG GLU LEU SEQRES 21 A 449 CYS ASP GLU PHE ASP ALA LEU LEU ILE PHE ASP GLU VAL SEQRES 22 A 449 GLN THR GLY CYS GLY LEU THR GLY THR ALA TRP ALA TYR SEQRES 23 A 449 GLN GLN LEU ASP VAL ALA PRO ASP ILE VAL ALA PHE GLY SEQRES 24 A 449 LYS LYS THR GLN VAL CYS GLY VAL MET ALA GLY ARG ARG SEQRES 25 A 449 VAL ASP GLU VAL ALA ASP ASN VAL PHE ALA VAL PRO SER SEQRES 26 A 449 ARG LEU ASN SER THR TRP GLY GLY ASN LEU THR ASP MET SEQRES 27 A 449 VAL ARG ALA ARG ARG ILE LEU GLU VAL ILE GLU ALA GLU SEQRES 28 A 449 GLY LEU PHE GLU ARG ALA VAL GLN HIS GLY LYS TYR LEU SEQRES 29 A 449 ARG ALA ARG LEU ASP GLU LEU ALA ALA ASP PHE PRO ALA SEQRES 30 A 449 VAL VAL LEU ASP PRO ARG GLY ARG GLY LEU MET CYS ALA SEQRES 31 A 449 PHE SER LEU PRO THR THR ALA ASP ARG ASP GLU LEU ILE SEQRES 32 A 449 ARG GLN LEU TRP GLN ARG ALA VAL ILE VAL LEU PRO ALA SEQRES 33 A 449 GLY ALA ASP THR VAL ARG PHE ARG PRO PRO LEU THR VAL SEQRES 34 A 449 SER THR ALA GLU ILE ASP ALA ALA ILE ALA ALA VAL ARG SEQRES 35 A 449 SER ALA LEU PRO VAL VAL THR HET PMP A1450 16 HETNAM PMP 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE HETSYN PMP PYRIDOXAMINE-5'-PHOSPHATE FORMUL 2 PMP C8 H13 N2 O5 P FORMUL 3 HOH *244(H2 O) HELIX 1 1 THR A 16 ASP A 18 5 3 HELIX 2 2 ARG A 19 ARG A 26 1 8 HELIX 3 3 PHE A 60 SER A 65 1 6 HELIX 4 4 PRO A 72 ASP A 77 1 6 HELIX 5 5 ASP A 78 LEU A 90 1 13 HELIX 6 6 SER A 100 GLY A 115 1 16 HELIX 7 7 GLY A 127 HIS A 150 1 24 HELIX 8 8 TYR A 173 LEU A 177 5 5 HELIX 9 9 LYS A 181 ALA A 186 1 6 HELIX 10 10 ASP A 206 ARG A 228 1 23 HELIX 11 11 ARG A 250 PHE A 264 1 15 HELIX 12 12 ALA A 285 ASP A 290 1 6 HELIX 13 13 GLY A 299 GLN A 303 5 5 HELIX 14 14 ARG A 311 VAL A 316 5 6 HELIX 15 15 ASN A 334 GLY A 352 1 19 HELIX 16 16 GLY A 352 PHE A 375 1 24 HELIX 17 17 THR A 395 ARG A 409 1 15 HELIX 18 18 SER A 430 THR A 449 1 20 SHEET 1 AA 3 TYR A 46 VAL A 48 0 SHEET 2 AA 3 ARG A 55 ASP A 58 -1 O TYR A 56 N LEU A 47 SHEET 3 AA 3 VAL A 411 ILE A 412 1 N ILE A 412 O LEU A 57 SHEET 1 AB 7 HIS A 121 VAL A 125 0 SHEET 2 AB 7 CYS A 305 ALA A 309 -1 O CYS A 305 N VAL A 125 SHEET 3 AB 7 ILE A 295 PHE A 298 -1 O VAL A 296 N MET A 308 SHEET 4 AB 7 LEU A 267 ASP A 271 1 O PHE A 270 N ALA A 297 SHEET 5 AB 7 ILE A 232 ALA A 237 1 O ALA A 233 N LEU A 267 SHEET 6 AB 7 GLN A 159 LEU A 163 1 O GLN A 159 N ALA A 233 SHEET 7 AB 7 ARG A 195 ILE A 196 1 N ILE A 196 O HIS A 162 SHEET 1 AC 2 ILE A 240 GLN A 241 0 SHEET 2 AC 2 ARG A 247 HIS A 248 -1 O ARG A 247 N GLN A 241 SHEET 1 AD 4 LEU A 380 ARG A 385 0 SHEET 2 AD 4 MET A 388 SER A 392 -1 O MET A 388 N ARG A 385 SHEET 3 AD 4 THR A 420 PHE A 423 -1 O VAL A 421 N PHE A 391 SHEET 4 AD 4 LEU A 414 ALA A 416 -1 O LEU A 414 N ARG A 422 SITE 1 AC1 17 GLY A 128 ALA A 129 PHE A 167 HIS A 168 SITE 2 AC1 17 GLU A 238 GLU A 243 ASP A 271 VAL A 273 SITE 3 AC1 17 GLN A 274 LYS A 300 THR A 330 HOH A2129 SITE 4 AC1 17 HOH A2240 HOH A2241 HOH A2242 HOH A2243 SITE 5 AC1 17 HOH A2244 CRYST1 103.270 103.270 98.266 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009683 0.005591 0.000000 0.00000 SCALE2 0.000000 0.011181 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010176 0.00000