HEADER HYDROLASE 10-APR-06 2CJZ TITLE CRYSTAL STRUCTURE OF THE C472S MUTANT OF HUMAN PROTEIN TYROSINE TITLE 2 PHOSPHATASE PTPN5 (STEP, STRIATUM ENRICHED PHOSPHATASE) IN COMPLEX TITLE 3 WITH PHOSPHOTYROSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN PROTEIN TYROSINE PHOSPHATASE PTPN5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PHOSPHATASE DOMAIN, RESIDUES 258-539; COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE STRIATUM-ENRICHED, STEP, COMPND 6 NEURAL- SPECIFIC PROTEIN-TYROSINE PHOSPHATASE; COMPND 7 EC: 3.1.3.48; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: T7; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PLIC SGC KEYWDS PROTEIN PHOSPHATASE, STEP, PTPN5, HYDROLASE, PHOSPHATASE EXPDTA X-RAY DIFFRACTION AUTHOR J.E.DEBRECZENI,A.J.BARR,J.ESWARAN,C.SMEE,N.BURGESS,O.GILEADI, AUTHOR 2 P.SAVITSKY,M.SUNDSTROM,C.ARROWSMITH,A.EDWARDS,J.WEIGELT,S.KNAPP, AUTHOR 3 F.VON DELFT REVDAT 8 13-DEC-23 2CJZ 1 REMARK REVDAT 7 23-OCT-19 2CJZ 1 SEQADV REVDAT 6 08-MAY-19 2CJZ 1 REMARK REVDAT 5 24-JAN-18 2CJZ 1 AUTHOR REVDAT 4 20-JUN-12 2CJZ 1 JRNL REVDAT 3 13-JUL-11 2CJZ 1 VERSN REVDAT 2 03-FEB-09 2CJZ 1 VERSN SOURCE AUTHOR JRNL REVDAT 1 16-MAY-06 2CJZ 0 JRNL AUTH A.J.BARR,E.UGOCHUKWU,W.H.LEE,O.N.F.KING,P.FILIPPAKOPOULOS, JRNL AUTH 2 I.ALFANO,P.SAVITSKY,N.A.BURGESS-BROWN,S.MULLER,S.KNAPP JRNL TITL LARGE-SCALE STRUCTURAL ANALYSIS OF THE CLASSICAL HUMAN JRNL TITL 2 PROTEIN TYROSINE PHOSPHATOME. JRNL REF CELL(CAMBRIDGE,MASS.) V. 136 352 2009 JRNL REFN ISSN 0092-8674 JRNL PMID 19167335 JRNL DOI 10.1016/J.CELL.2008.11.038 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 101.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 35803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1888 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2241 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2194 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 212 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.68000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : -0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.529 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2286 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1540 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3116 ; 1.107 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3754 ; 0.825 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 280 ; 5.273 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;33.769 ;23.774 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 372 ;10.922 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.849 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 343 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2521 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 460 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 426 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1561 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1100 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1083 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 159 ; 0.289 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 2 ; 0.069 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 29 ; 0.219 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.166 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1437 ; 2.754 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2269 ; 3.653 ; 7.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 983 ; 4.667 ; 9.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 843 ; 6.320 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -7 A 536 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2050 -5.4270 -16.0770 REMARK 3 T TENSOR REMARK 3 T11: -0.0253 T22: -0.0525 REMARK 3 T33: -0.0409 T12: -0.0043 REMARK 3 T13: 0.0017 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.2967 L22: 0.6802 REMARK 3 L33: 1.2861 L12: -0.0679 REMARK 3 L13: -0.3212 L23: 0.0389 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: 0.0025 S13: -0.0112 REMARK 3 S21: 0.0123 S22: 0.0196 S23: 0.1004 REMARK 3 S31: 0.0268 S32: -0.1081 S33: -0.0152 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2CJZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-APR-06. REMARK 100 THE DEPOSITION ID IS D_1290028450. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37692 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.9200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.31 REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2BIJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150 NL SITTING DROPS, 0.1 M CACL2, 0.1 REMARK 280 M TRIS PH 8, 20% PEG 6K, 10% ETHYLENE GLYCOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.17100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.39050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.17400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.39050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.17100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.17400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 472 TO SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A 376 REMARK 465 ILE A 377 REMARK 465 GLU A 378 REMARK 465 GLU A 379 REMARK 465 MET A 380 REMARK 465 ASN A 381 REMARK 465 GLU A 382 REMARK 465 LYS A 383 REMARK 465 CYS A 384 REMARK 465 GLY A 421 REMARK 465 THR A 422 REMARK 465 HIS A 537 REMARK 465 GLN A 538 REMARK 465 SER A 539 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A -6 CG CD1 CD2 REMARK 470 LYS A 291 CE NZ REMARK 470 ARG A 300 CZ NH1 NH2 REMARK 470 LYS A 305 CD CE NZ REMARK 470 GLU A 386 CD OE1 OE2 REMARK 470 GLU A 390 CG CD OE1 OE2 REMARK 470 GLU A 391 CG CD OE1 OE2 REMARK 470 GLU A 399 CD OE1 OE2 REMARK 470 LYS A 404 NZ REMARK 470 LYS A 419 CG CD CE NZ REMARK 470 GLU A 423 CG CD OE1 OE2 REMARK 470 GLU A 424 CD OE1 OE2 REMARK 470 ASP A 437 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2185 O HOH A 2187 1.94 REMARK 500 OH TYR A -5 O HOH A 2006 1.97 REMARK 500 OG SER A 328 O HOH A 2072 2.10 REMARK 500 OD1 ASP A 321 O HOH A 2066 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 321 71.65 -153.14 REMARK 500 GLU A 391 -60.98 -134.07 REMARK 500 SER A 434 35.75 -90.49 REMARK 500 LYS A 439 53.05 -94.60 REMARK 500 ILE A 476 -44.42 -130.08 REMARK 500 ILE A 515 99.72 66.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2133 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A2148 DISTANCE = 5.83 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PTR A 1537 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PTR A 1537 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1538 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BIJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN PROTEIN TYROSINE PHOSPHATASE PTPN5 REMARK 900 (STEP, STRIATUM ENRICHED ENRICHED PHOSPHATASE) REMARK 900 RELATED ID: 2BV5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN PROTEIN TYROSINE PHOSPHATASE PTPN5 REMARK 900 AT 1.8A RESOLUTION REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES ASP 289, LEU 298, VAL 299 AND THR 517 ARE GIVEN AS REMARK 999 VARIANTS IN THE UNIPROT ENTRY P54829 AND REFERNCED IN REMARK 999 PUBMED ID: 14702039. RESIDUES -23 TO -1 FORM PART OF A REMARK 999 N-TERMINAL HIS-TAG USED FOR EXPRESSION DBREF 2CJZ A -23 -1 PDB 2CJZ 2CJZ -23 -1 DBREF 2CJZ A 258 539 UNP P54829 PTN5_HUMAN 258 539 SEQADV 2CJZ ASP A 289 UNP P54829 VAL 289 VARIANT SEQADV 2CJZ LEU A 298 UNP P54829 ARG 298 VARIANT SEQADV 2CJZ VAL A 299 UNP P54829 CYS 299 VARIANT SEQADV 2CJZ SER A 472 UNP P54829 CYS 472 ENGINEERED MUTATION SEQADV 2CJZ THR A 517 UNP P54829 HIS 517 VARIANT SEQRES 1 A 305 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 305 GLY THR GLU ASN LEU TYR PHE GLN SER MET SER ARG VAL SEQRES 3 A 305 LEU GLN ALA GLU GLU LEU HIS GLU LYS ALA LEU ASP PRO SEQRES 4 A 305 PHE LEU LEU GLN ALA GLU PHE PHE GLU ILE PRO MET ASN SEQRES 5 A 305 PHE VAL ASP PRO LYS GLU TYR ASP ILE PRO GLY LEU VAL SEQRES 6 A 305 ARG LYS ASN ARG TYR LYS THR ILE LEU PRO ASN PRO HIS SEQRES 7 A 305 SER ARG VAL CYS LEU THR SER PRO ASP PRO ASP ASP PRO SEQRES 8 A 305 LEU SER SER TYR ILE ASN ALA ASN TYR ILE ARG GLY TYR SEQRES 9 A 305 GLY GLY GLU GLU LYS VAL TYR ILE ALA THR GLN GLY PRO SEQRES 10 A 305 ILE VAL SER THR VAL ALA ASP PHE TRP ARG MET VAL TRP SEQRES 11 A 305 GLN GLU HIS THR PRO ILE ILE VAL MET ILE THR ASN ILE SEQRES 12 A 305 GLU GLU MET ASN GLU LYS CYS THR GLU TYR TRP PRO GLU SEQRES 13 A 305 GLU GLN VAL ALA TYR ASP GLY VAL GLU ILE THR VAL GLN SEQRES 14 A 305 LYS VAL ILE HIS THR GLU ASP TYR ARG LEU ARG LEU ILE SEQRES 15 A 305 SER LEU LYS SER GLY THR GLU GLU ARG GLY LEU LYS HIS SEQRES 16 A 305 TYR TRP PHE THR SER TRP PRO ASP GLN LYS THR PRO ASP SEQRES 17 A 305 ARG ALA PRO PRO LEU LEU HIS LEU VAL ARG GLU VAL GLU SEQRES 18 A 305 GLU ALA ALA GLN GLN GLU GLY PRO HIS CYS ALA PRO ILE SEQRES 19 A 305 ILE VAL HIS SER SER ALA GLY ILE GLY ARG THR GLY CYS SEQRES 20 A 305 PHE ILE ALA THR SER ILE CYS CYS GLN GLN LEU ARG GLN SEQRES 21 A 305 GLU GLY VAL VAL ASP ILE LEU LYS THR THR CYS GLN LEU SEQRES 22 A 305 ARG GLN ASP ARG GLY GLY MET ILE GLN THR CYS GLU GLN SEQRES 23 A 305 TYR GLN PHE VAL HIS HIS VAL MET SER LEU TYR GLU LYS SEQRES 24 A 305 GLN LEU SER HIS GLN SER HET PTR A1537 16 HET EDO A1538 4 HETNAM PTR O-PHOSPHOTYROSINE HETNAM EDO 1,2-ETHANEDIOL HETSYN PTR PHOSPHONOTYROSINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PTR C9 H12 N O6 P FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *212(H2 O) HELIX 1 1 GLN A 262 ALA A 270 1 9 HELIX 2 2 ASP A 272 PHE A 281 1 10 HELIX 3 3 ASP A 289 TYR A 293 5 5 HELIX 4 4 GLY A 297 ASN A 302 5 6 HELIX 5 5 ASN A 310 SER A 313 5 4 HELIX 6 6 GLY A 337 GLU A 341 5 5 HELIX 7 7 ILE A 352 SER A 354 5 3 HELIX 8 8 THR A 355 HIS A 367 1 13 HELIX 9 9 THR A 440 ASP A 442 5 3 HELIX 10 10 ARG A 443 GLU A 461 1 19 HELIX 11 11 ILE A 476 GLY A 496 1 21 HELIX 12 12 ASP A 499 ARG A 511 1 13 HELIX 13 13 THR A 517 SER A 536 1 20 SHEET 1 AA 8 ALA A 332 ILE A 335 0 SHEET 2 AA 8 TYR A 345 GLN A 349 -1 O TYR A 345 N ILE A 335 SHEET 3 AA 8 ILE A 468 SER A 472 1 O ILE A 468 N ILE A 346 SHEET 4 AA 8 ILE A 370 ILE A 374 1 O ILE A 370 N ILE A 469 SHEET 5 AA 8 GLU A 424 PHE A 432 1 O LYS A 428 N ILE A 371 SHEET 6 AA 8 TYR A 411 LYS A 419 -1 O ARG A 412 N TRP A 431 SHEET 7 AA 8 VAL A 398 HIS A 407 -1 O GLU A 399 N LYS A 419 SHEET 8 AA 8 GLN A 392 TYR A 395 -1 O VAL A 393 N ILE A 400 CISPEP 1 SER A 319 PRO A 320 0 4.32 SITE 1 AC1 10 TYR A 304 ILE A 307 SER A 472 SER A 473 SITE 2 AC1 10 ALA A 474 GLY A 475 ILE A 476 GLY A 477 SITE 3 AC1 10 ARG A 478 HOH A2213 SITE 1 AC2 6 PHE A 280 PHE A 281 ILE A 283 MET A 285 SITE 2 AC2 6 ARG A 508 HOH A2194 CRYST1 52.342 64.348 100.781 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019105 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015540 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009923 0.00000