HEADER HYDROLASE 14-APR-06 2CKC TITLE SOLUTION STRUCTURES OF THE BRK DOMAINS OF THE HUMAN CHROMO HELICASE TITLE 2 DOMAIN 7 AND 8, REVEALS STRUCTURAL SIMILARITY WITH GYF DOMAIN TITLE 3 SUGGESTING A ROLE IN PROTEIN INTERACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BRK, RESIDUES 1801-1860; COMPND 5 SYNONYM: ATP-DEPENDENT HELICASE CHD7, CHD-7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHISLIC; SOURCE 9 OTHER_DETAILS: SELF MADE CDNA LIBRARY OF MULTIPLE HUMAN CARCINOMA SOURCE 10 CELL LINES KEYWDS PROTEIN-PROTEIN INTERACTION, PHOSPHORYLATION, DISEASE MUTATION, KEYWDS 2 NUCLEOTIDE-BINDING, TRANSCRIPTION REGULATION, TRANSCRIPTION KEYWDS 3 ELONGATION, CHROMATIN REGULATOR, CHROMATIN REMODELING, HELICASE, KEYWDS 4 HYDROLASE, BRK DOMAIN, ATP-BINDING, DNA-BINDING, TRANSCRIPTION, KEYWDS 5 NUCLEAR PROTEIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR E.AB,R.N.DE JONG,T.DIERCKS,J.XIAOYUN,M.DANIELS,R.KAPTEIN,G.E.FOLKERS REVDAT 3 15-MAY-24 2CKC 1 REMARK REVDAT 2 24-FEB-09 2CKC 1 VERSN REVDAT 1 08-MAY-07 2CKC 0 JRNL AUTH E.AB,R.N.DE JONG,T.DIERCKS,J.XIAOYUN,M.DANIELS,R.KAPTEIN, JRNL AUTH 2 G.E.FOLKERS JRNL TITL SOLUTION STRUCTURES OF THE BRK DOMAINS OF THE HUMAN CHROMO JRNL TITL 2 HELICASE DOMAIN 7 AND 8, REVEALS STRUCTURAL SIMILARITY WITH JRNL TITL 3 GYF DOMAIN SUGGESTING A ROLE IN PROTEIN INTERACTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. REMARK 4 REMARK 4 2CKC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-APR-06. REMARK 100 THE DEPOSITION ID IS D_1290028376. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 5% D2O/95% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCO; HNCACO; HNCACB; CBCACONH; REMARK 210 HBHACONH; HNCAHA; CCONH; CCH- REMARK 210 COSY; HCCH- TOCSY; HNH-NOESY; REMARK 210 HCH- NOESY; CNH-NOESY; HH- NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : CANDID IN CYANA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED HIS-TAGGED CHROMODOMAIN REMARK 210 HELICASE DNA BINDING PROTEIN 7 2564-2622 REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-25 REMARK 465 RES C SSSEQI REMARK 465 MET A 2543 REMARK 465 GLY A 2544 REMARK 465 SER A 2545 REMARK 465 SER A 2546 REMARK 465 HIS A 2547 REMARK 465 HIS A 2548 REMARK 465 HIS A 2549 REMARK 465 HIS A 2550 REMARK 465 HIS A 2551 REMARK 465 HIS A 2552 REMARK 465 SER A 2553 REMARK 465 SER A 2554 REMARK 465 HIS A 2555 REMARK 465 MET A 2556 REMARK 465 LEU A 2557 REMARK 465 VAL A 2558 REMARK 465 PRO A 2559 REMARK 465 ARG A 2560 REMARK 465 GLY A 2561 REMARK 465 SER A 2562 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A2608 -87.13 -85.82 REMARK 500 1 ASN A2612 -98.53 42.22 REMARK 500 1 PHE A2617 -171.18 63.10 REMARK 500 1 SER A2618 24.98 -141.58 REMARK 500 2 TYR A2608 -167.62 -103.20 REMARK 500 2 VAL A2615 -52.04 -163.15 REMARK 500 2 LEU A2616 -72.88 -147.56 REMARK 500 3 SER A2607 -67.72 62.35 REMARK 500 3 TYR A2608 -80.04 -90.59 REMARK 500 3 ASN A2612 -69.87 -109.07 REMARK 500 3 ALA A2613 -41.78 -142.57 REMARK 500 3 PHE A2617 -76.18 -102.11 REMARK 500 3 GLN A2621 83.63 66.24 REMARK 500 4 PRO A2570 96.35 -68.17 REMARK 500 4 TYR A2608 -97.11 -128.36 REMARK 500 4 ASN A2612 -41.46 -142.96 REMARK 500 4 ALA A2613 -171.85 67.84 REMARK 500 4 VAL A2615 -78.89 -114.77 REMARK 500 4 GLN A2621 -40.57 72.79 REMARK 500 5 ALA A2613 -179.24 70.47 REMARK 500 6 SER A2607 -83.72 71.75 REMARK 500 6 TYR A2608 -176.44 177.71 REMARK 500 6 LEU A2616 -51.63 -143.30 REMARK 500 6 PHE A2617 113.60 -162.77 REMARK 500 7 SER A2618 91.39 -69.70 REMARK 500 7 SER A2619 -62.42 -140.69 REMARK 500 7 GLN A2621 76.26 65.21 REMARK 500 8 LYS A2611 47.52 -84.28 REMARK 500 8 SER A2619 -9.77 72.00 REMARK 500 8 GLN A2621 -64.52 -130.81 REMARK 500 9 TYR A2608 -169.31 -171.82 REMARK 500 9 LYS A2611 98.03 -64.80 REMARK 500 9 VAL A2615 -77.15 -133.76 REMARK 500 9 LEU A2616 -52.87 -158.73 REMARK 500 9 PHE A2617 -164.54 -116.36 REMARK 500 9 GLN A2621 75.04 71.81 REMARK 500 10 LEU A2616 90.90 66.46 REMARK 500 11 SER A2607 -57.16 75.53 REMARK 500 11 PRO A2610 100.82 -58.60 REMARK 500 11 ALA A2613 -71.25 -128.24 REMARK 500 12 PRO A2610 105.25 -55.98 REMARK 500 12 VAL A2615 90.32 64.84 REMARK 500 13 PHE A2617 70.00 72.37 REMARK 500 13 SER A2619 93.80 68.59 REMARK 500 14 TYR A2608 -164.77 -168.95 REMARK 500 14 PRO A2610 108.23 -50.07 REMARK 500 14 ASN A2612 -51.78 -121.26 REMARK 500 14 VAL A2615 77.34 63.53 REMARK 500 15 LEU A2616 79.07 62.15 REMARK 500 15 GLN A2621 -69.42 -108.81 REMARK 500 REMARK 500 THIS ENTRY HAS 72 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 20 ARG A2568 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2CKC A 2543 2562 PDB 2CKC 2CKC 2543 2562 DBREF 2CKC A 2563 2622 UNP Q9P2D1 CHD7_HUMAN 1801 1860 SEQRES 1 A 80 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER HIS SEQRES 2 A 80 MET LEU VAL PRO ARG GLY SER LEU ASP PRO ASP THR ARG SEQRES 3 A 80 ILE PRO VAL ILE ASN LEU GLU ASP GLY THR ARG LEU VAL SEQRES 4 A 80 GLY GLU ASP ALA PRO LYS ASN LYS ASP LEU VAL GLU TRP SEQRES 5 A 80 LEU LYS LEU HIS PRO THR TYR THR VAL ASP MET PRO SER SEQRES 6 A 80 TYR VAL PRO LYS ASN ALA ASP VAL LEU PHE SER SER PHE SEQRES 7 A 80 GLN LYS HELIX 1 1 LYS A 2587 HIS A 2598 1 12 SHEET 1 AA 3 THR A2578 LEU A2580 0 SHEET 2 AA 3 VAL A2571 ASN A2573 -1 O VAL A2571 N LEU A2580 SHEET 3 AA 3 TYR A2601 VAL A2603 -1 O THR A2602 N ILE A2572 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1