HEADER TRANSFERASE 17-APR-06 2CKD TITLE CRYSTAL STRUCTURE OF ML2640 FROM MYCOBACTERIUM LEPRAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE S-ADENOSYL-L-METHIONINE-DEPENDENT COMPND 3 METHYLTRANSFERASE ML2640; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: HYPOTHETICAL PROTEIN ML2640; COMPND 6 EC: 2.1.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM LEPRAE; SOURCE 3 ORGANISM_TAXID: 1769; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDEST17 KEYWDS TRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GRANA,A.BUSCHIAZZO,A.WEHENKEL,A.HAOUZ,P.M.ALZARI REVDAT 4 13-JUL-11 2CKD 1 VERSN REVDAT 3 24-FEB-09 2CKD 1 VERSN REVDAT 2 11-SEP-07 2CKD 1 JRNL REVDAT 1 29-MAY-07 2CKD 0 JRNL AUTH M.GRANA,A.HAOUZ,A.BUSCHIAZZO,I.MIRAS,A.WEHENKEL,V.BONDET, JRNL AUTH 2 W.SHEPARD,F.SCHAEFFER,S.T.COLE,P.M.ALZARI JRNL TITL THE CRYSTAL STRUCTURE OF M. LEPRAE ML2640C DEFINES A LARGE JRNL TITL 2 FAMILY OF PUTATIVE S-ADENOSYLMETHIONINE- DEPENDENT JRNL TITL 3 METHYLTRANSFERASES IN MYCOBACTERIA. JRNL REF PROTEIN SCI. V. 16 1896 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17660248 JRNL DOI 10.1110/PS.072982707 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 19338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1043 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1410 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.3930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4692 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : UNVERIFIED REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : 0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.634 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.358 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.258 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.887 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.880 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4800 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6542 ; 1.826 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 599 ; 8.161 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 234 ;33.973 ;22.949 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 741 ;21.302 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;20.382 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 721 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3752 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2143 ; 0.248 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3250 ; 0.327 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 158 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.198 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.175 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3059 ; 0.765 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4798 ; 1.293 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1999 ; 1.969 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1744 ; 3.191 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 310 REMARK 3 ORIGIN FOR THE GROUP (A): -12.0435 -33.2203 26.6130 REMARK 3 T TENSOR REMARK 3 T11: -0.1787 T22: -0.1287 REMARK 3 T33: -0.0745 T12: 0.0372 REMARK 3 T13: -0.0586 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.2902 L22: 1.5787 REMARK 3 L33: 2.6312 L12: -0.5308 REMARK 3 L13: -0.6904 L23: -0.0988 REMARK 3 S TENSOR REMARK 3 S11: 0.0757 S12: 0.1023 S13: 0.3962 REMARK 3 S21: -0.1950 S22: 0.0531 S23: 0.1017 REMARK 3 S31: -0.3137 S32: -0.1064 S33: -0.1288 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 12 B 310 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3810 -67.2741 47.8619 REMARK 3 T TENSOR REMARK 3 T11: -0.1365 T22: -0.1541 REMARK 3 T33: -0.0427 T12: -0.0265 REMARK 3 T13: -0.0041 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.2142 L22: 2.3632 REMARK 3 L33: 3.7254 L12: -1.0303 REMARK 3 L13: 0.9623 L23: -0.1558 REMARK 3 S TENSOR REMARK 3 S11: 0.1510 S12: 0.1034 S13: -0.4784 REMARK 3 S21: -0.1528 S22: 0.0451 S23: 0.4640 REMARK 3 S31: 0.4306 S32: -0.3969 S33: -0.1961 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. TWO PROTEIN LOOPS AND A FEW SOLVENT- EXPOSED REMARK 3 SIDE-CHAINS WERE MODELED STEREOCHEMICALLY. REMARK 4 REMARK 4 2CKD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-APR-06. REMARK 100 THE PDBE ID CODE IS EBI-28312. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SILICON 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD (QUANTUM-210) REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20669 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.80 REMARK 200 RESOLUTION RANGE LOW (A) : 85.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.5 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.6 REMARK 200 R MERGE FOR SHELL (I) : 0.25 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PREVIOUS MODEL OBTAINED FROM SAD PHASING REMARK 200 REMARK 200 REMARK: THE STRUCTURE WAS DETERMINED AT 3 A RESOLUTION REMARK 200 USING SAD PHASING FROM A SEMET-LABELED CRYSTAL. THIS REMARK 200 DATASET CORRESPONDS TO THE WILD-TYPE NON-LABELED PROTEIN REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.9 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 0.1 M REMARK 280 HEPES, PH 7.5, 50 MM MGCL2 (PROTEIN CONCENTRATION 11.8 REMARK 280 MG/ML) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.68350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.39000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.39000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 127.02525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.39000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.39000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.34175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.39000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.39000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 127.02525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.39000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.39000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.34175 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 84.68350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 THR A 3 REMARK 465 HIS A 4 REMARK 465 ASP A 5 REMARK 465 ASP A 6 REMARK 465 THR A 7 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 THR B 3 REMARK 465 HIS B 4 REMARK 465 ASP B 5 REMARK 465 ASP B 6 REMARK 465 THR B 7 REMARK 465 TRP B 8 REMARK 465 ASP B 9 REMARK 465 ILE B 10 REMARK 465 LYS B 11 REMARK 465 THR B 12 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 280 NH1 ARG B 283 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 96 CB ASN A 96 CG 0.154 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 213 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 213 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 GLY B 270 N - CA - C ANGL. DEV. = -22.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 34 125.50 -29.51 REMARK 500 ALA A 110 68.85 37.49 REMARK 500 ASP A 132 -171.89 -178.62 REMARK 500 PRO A 177 0.08 -65.73 REMARK 500 LEU A 188 -58.02 -122.48 REMARK 500 VAL A 210 127.57 -38.26 REMARK 500 GLN A 231 -70.21 -41.58 REMARK 500 GLU A 244 -29.23 -29.00 REMARK 500 ALA A 246 128.74 -23.09 REMARK 500 HIS A 269 43.28 -141.22 REMARK 500 ASP B 70 117.40 -166.82 REMARK 500 ASP B 132 173.10 177.61 REMARK 500 GLN B 164 -166.21 -116.81 REMARK 500 PRO B 177 -3.62 -57.78 REMARK 500 LEU B 241 21.38 -72.26 REMARK 500 VAL B 247 108.36 -45.07 REMARK 500 ASP B 248 71.96 -119.76 REMARK 500 GLN B 250 103.13 -49.91 REMARK 500 GLU B 251 126.19 -27.45 REMARK 500 ILE B 253 -41.92 49.55 REMARK 500 TYR B 254 62.39 -109.77 REMARK 500 HIS B 269 35.51 -164.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS B 269 GLY B 270 111.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP A 256 23.1 L L OUTSIDE RANGE REMARK 500 ARG A 284 24.4 L L OUTSIDE RANGE REMARK 500 ILE B 253 23.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL DBREF 2CKD A 1 310 UNP Q9CCZ4 Q9CCZ4_MYCLE 1 310 DBREF 2CKD B 1 310 UNP Q9CCZ4 Q9CCZ4_MYCLE 1 310 SEQRES 1 A 310 MET ARG THR HIS ASP ASP THR TRP ASP ILE LYS THR SER SEQRES 2 A 310 VAL GLY THR THR ALA VAL MET VAL ALA ALA ALA ARG ALA SEQRES 3 A 310 ALA GLU THR ASP ARG PRO ASP ALA LEU ILE ARG ASP PRO SEQRES 4 A 310 TYR ALA LYS LEU LEU VAL THR ASN THR GLY ALA GLY ALA SEQRES 5 A 310 LEU TRP GLU ALA MET LEU ASP PRO SER MET VAL ALA LYS SEQRES 6 A 310 VAL GLU ALA ILE ASP ALA GLU ALA ALA ALA MET VAL GLU SEQRES 7 A 310 HIS MET ARG SER TYR GLN ALA VAL ARG THR ASN PHE PHE SEQRES 8 A 310 ASP THR TYR PHE ASN ASN ALA VAL ILE ASP GLY ILE ARG SEQRES 9 A 310 GLN PHE VAL ILE LEU ALA SER GLY LEU ASP SER ARG ALA SEQRES 10 A 310 TYR ARG LEU ASP TRP PRO THR GLY THR THR VAL TYR GLU SEQRES 11 A 310 ILE ASP GLN PRO LYS VAL LEU ALA TYR LYS SER THR THR SEQRES 12 A 310 LEU ALA GLU HIS GLY VAL THR PRO THR ALA ASP ARG ARG SEQRES 13 A 310 GLU VAL PRO ILE ASP LEU ARG GLN ASP TRP PRO PRO ALA SEQRES 14 A 310 LEU ARG SER ALA GLY PHE ASP PRO SER ALA ARG THR ALA SEQRES 15 A 310 TRP LEU ALA GLU GLY LEU LEU MET TYR LEU PRO ALA THR SEQRES 16 A 310 ALA GLN ASP GLY LEU PHE THR GLU ILE GLY GLY LEU SER SEQRES 17 A 310 ALA VAL GLY SER ARG ILE ALA VAL GLU THR SER PRO LEU SEQRES 18 A 310 HIS GLY ASP GLU TRP ARG GLU GLN MET GLN LEU ARG PHE SEQRES 19 A 310 ARG ARG VAL SER ASP ALA LEU GLY PHE GLU GLN ALA VAL SEQRES 20 A 310 ASP VAL GLN GLU LEU ILE TYR HIS ASP GLU ASN ARG ALA SEQRES 21 A 310 VAL VAL ALA ASP TRP LEU ASN ARG HIS GLY TRP ARG ALA SEQRES 22 A 310 THR ALA GLN SER ALA PRO ASP GLU MET ARG ARG VAL GLY SEQRES 23 A 310 ARG TRP GLY ASP GLY VAL PRO MET ALA ASP ASP LYS ASP SEQRES 24 A 310 ALA PHE ALA GLU PHE VAL THR ALA HIS ARG LEU SEQRES 1 B 310 MET ARG THR HIS ASP ASP THR TRP ASP ILE LYS THR SER SEQRES 2 B 310 VAL GLY THR THR ALA VAL MET VAL ALA ALA ALA ARG ALA SEQRES 3 B 310 ALA GLU THR ASP ARG PRO ASP ALA LEU ILE ARG ASP PRO SEQRES 4 B 310 TYR ALA LYS LEU LEU VAL THR ASN THR GLY ALA GLY ALA SEQRES 5 B 310 LEU TRP GLU ALA MET LEU ASP PRO SER MET VAL ALA LYS SEQRES 6 B 310 VAL GLU ALA ILE ASP ALA GLU ALA ALA ALA MET VAL GLU SEQRES 7 B 310 HIS MET ARG SER TYR GLN ALA VAL ARG THR ASN PHE PHE SEQRES 8 B 310 ASP THR TYR PHE ASN ASN ALA VAL ILE ASP GLY ILE ARG SEQRES 9 B 310 GLN PHE VAL ILE LEU ALA SER GLY LEU ASP SER ARG ALA SEQRES 10 B 310 TYR ARG LEU ASP TRP PRO THR GLY THR THR VAL TYR GLU SEQRES 11 B 310 ILE ASP GLN PRO LYS VAL LEU ALA TYR LYS SER THR THR SEQRES 12 B 310 LEU ALA GLU HIS GLY VAL THR PRO THR ALA ASP ARG ARG SEQRES 13 B 310 GLU VAL PRO ILE ASP LEU ARG GLN ASP TRP PRO PRO ALA SEQRES 14 B 310 LEU ARG SER ALA GLY PHE ASP PRO SER ALA ARG THR ALA SEQRES 15 B 310 TRP LEU ALA GLU GLY LEU LEU MET TYR LEU PRO ALA THR SEQRES 16 B 310 ALA GLN ASP GLY LEU PHE THR GLU ILE GLY GLY LEU SER SEQRES 17 B 310 ALA VAL GLY SER ARG ILE ALA VAL GLU THR SER PRO LEU SEQRES 18 B 310 HIS GLY ASP GLU TRP ARG GLU GLN MET GLN LEU ARG PHE SEQRES 19 B 310 ARG ARG VAL SER ASP ALA LEU GLY PHE GLU GLN ALA VAL SEQRES 20 B 310 ASP VAL GLN GLU LEU ILE TYR HIS ASP GLU ASN ARG ALA SEQRES 21 B 310 VAL VAL ALA ASP TRP LEU ASN ARG HIS GLY TRP ARG ALA SEQRES 22 B 310 THR ALA GLN SER ALA PRO ASP GLU MET ARG ARG VAL GLY SEQRES 23 B 310 ARG TRP GLY ASP GLY VAL PRO MET ALA ASP ASP LYS ASP SEQRES 24 B 310 ALA PHE ALA GLU PHE VAL THR ALA HIS ARG LEU HELIX 1 1 THR A 12 ASP A 30 1 19 HELIX 2 2 TYR A 40 ASN A 47 1 8 HELIX 3 3 GLY A 51 ASP A 59 1 9 HELIX 4 4 MET A 62 ASP A 70 1 9 HELIX 5 5 ASP A 70 ASP A 101 1 32 HELIX 6 6 SER A 115 LEU A 120 1 6 HELIX 7 7 GLN A 133 HIS A 147 1 15 HELIX 8 8 TRP A 166 SER A 172 1 7 HELIX 9 9 LEU A 188 LEU A 192 5 5 HELIX 10 10 PRO A 193 LEU A 207 1 15 HELIX 11 11 HIS A 222 GLY A 242 1 21 HELIX 12 12 VAL A 261 ARG A 268 1 8 HELIX 13 13 ALA A 278 VAL A 285 1 8 HELIX 14 14 ASP A 297 PHE A 301 5 5 HELIX 15 15 GLY B 15 ARG B 31 1 17 HELIX 16 16 TYR B 40 ASN B 47 1 8 HELIX 17 17 ALA B 50 ASP B 59 1 10 HELIX 18 18 MET B 62 ASP B 70 1 9 HELIX 19 19 ASP B 70 ASP B 101 1 32 HELIX 20 20 SER B 115 LEU B 120 1 6 HELIX 21 21 GLN B 133 HIS B 147 1 15 HELIX 22 22 ASP B 165 SER B 172 1 8 HELIX 23 23 LEU B 188 LEU B 192 5 5 HELIX 24 24 ALA B 194 SER B 208 1 15 HELIX 25 25 HIS B 222 LEU B 241 1 20 HELIX 26 26 VAL B 261 ARG B 268 1 8 HELIX 27 27 ALA B 278 VAL B 285 1 8 HELIX 28 28 ASP B 297 PHE B 301 5 5 SHEET 1 AA 7 ASP A 154 PRO A 159 0 SHEET 2 AA 7 THR A 127 ASP A 132 1 O VAL A 128 N ARG A 156 SHEET 3 AA 7 GLN A 105 LEU A 109 1 O PHE A 106 N TYR A 129 SHEET 4 AA 7 THR A 181 ALA A 185 1 O ALA A 182 N VAL A 107 SHEET 5 AA 7 ARG A 213 GLU A 217 1 O ARG A 213 N TRP A 183 SHEET 6 AA 7 GLU A 303 ARG A 309 -1 O VAL A 305 N VAL A 216 SHEET 7 AA 7 TRP A 271 SER A 277 -1 O ARG A 272 N HIS A 308 SHEET 1 BA 7 ASP B 154 PRO B 159 0 SHEET 2 BA 7 THR B 127 ASP B 132 1 O VAL B 128 N ARG B 156 SHEET 3 BA 7 GLN B 105 LEU B 109 1 O PHE B 106 N TYR B 129 SHEET 4 BA 7 ALA B 182 ALA B 185 1 O ALA B 182 N VAL B 107 SHEET 5 BA 7 ARG B 213 GLU B 217 1 O ARG B 213 N TRP B 183 SHEET 6 BA 7 GLU B 303 ARG B 309 -1 O VAL B 305 N VAL B 216 SHEET 7 BA 7 TRP B 271 SER B 277 -1 O ARG B 272 N HIS B 308 CRYST1 96.780 96.780 169.367 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010333 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010333 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005904 0.00000