HEADER TRANSCRIPTION 20-APR-06 2CKL TITLE RING1B-BMI1 E3 CATALYTIC DOMAIN STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYCOMB GROUP RING FINGER PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RING DOMAIN, RESIDUES 1-108; COMPND 5 SYNONYM: BMI1, POLYCOMB COMPLEX PROTEIN BMI-1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: UBIQUITIN LIGASE PROTEIN RING2; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RING DOMAIN, RESIDUES 1-159; COMPND 11 SYNONYM: RING1B, RING FINGER PROTEIN 2, RING FINGER PROTEIN 1B; COMPND 12 EC: 6.3.2.-; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA PLYS S; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX6P 2RBS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: ROSETTE PLYSS; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PGEX6P 2RBS KEYWDS BMI1, LIGASE, RING1B, POLYCOMB, E3-LIGASE, NUCLEAR PROTEIN, KEYWDS 2 CHROMOSOMAL PROTEIN, TRANSCRIPTION REGULATION, METAL-BINDING, KEYWDS 3 PROTO-ONCOGENE, CHROMATIN REGULATOR, UBL CONJUGATION PATHWAY, KEYWDS 4 REPRESSOR, ZINC-FINGER, RING DOMAIN, TRANSCRIPTION, TRANSCRIPTION KEYWDS 5 REGULATION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.BUCHWALD,P.VAN DER STOOP,O.WEICHENRIEDER,A.PERRAKIS,M.VAN LOHUIZEN, AUTHOR 2 T.K.SIXMA REVDAT 4 13-JUL-11 2CKL 1 VERSN REVDAT 3 24-FEB-09 2CKL 1 VERSN REVDAT 2 20-DEC-06 2CKL 1 JRNL REVDAT 1 11-MAY-06 2CKL 0 JRNL AUTH G.BUCHWALD,P.VAN DER STOOP,O.WEICHENRIEDER,A.PERRAKIS, JRNL AUTH 2 M.VAN LOHUIZEN,T.K.SIXMA JRNL TITL STRUCTURE AND E3-LIGASE ACTIVITY OF THE RING-RING COMPLEX JRNL TITL 2 OF POLYCOMB PROTEINS BMI1 AND RING1B. JRNL REF EMBO J. V. 25 2465 2006 JRNL REFN ISSN 0261-4189 JRNL PMID 16710298 JRNL DOI 10.1038/SJ.EMBOJ.7601144 REMARK 2 REMARK 2 RESOLUTION. 2.0 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14759 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 781 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1065 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1562 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 123 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -0.46000 REMARK 3 B12 (A**2) : 0.15000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.275 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1590 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2143 ; 1.565 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 191 ; 6.150 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 64 ;35.600 ;22.812 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 310 ;15.662 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;17.834 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 251 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1137 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 802 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1120 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 114 ; 0.141 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.169 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.153 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 981 ; 0.896 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1590 ; 1.481 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 652 ; 2.304 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 553 ; 3.550 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 101 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3790 49.1550 0.5930 REMARK 3 T TENSOR REMARK 3 T11: -0.2657 T22: -0.2271 REMARK 3 T33: -0.2327 T12: 0.0209 REMARK 3 T13: 0.0152 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 3.1434 L22: 1.9978 REMARK 3 L33: 5.2431 L12: -0.9722 REMARK 3 L13: 1.6053 L23: -1.0558 REMARK 3 S TENSOR REMARK 3 S11: 0.0303 S12: -0.0362 S13: -0.1745 REMARK 3 S21: -0.1161 S22: -0.0162 S23: 0.1162 REMARK 3 S31: 0.0418 S32: -0.0749 S33: -0.0140 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 15 B 38 REMARK 3 RESIDUE RANGE : B 44 B 113 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8610 42.0620 1.1520 REMARK 3 T TENSOR REMARK 3 T11: -0.0195 T22: -0.0249 REMARK 3 T33: -0.0139 T12: -0.0757 REMARK 3 T13: 0.0002 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 9.0000 L22: 1.0774 REMARK 3 L33: 1.8037 L12: 2.9169 REMARK 3 L13: 3.0685 L23: 0.6782 REMARK 3 S TENSOR REMARK 3 S11: 0.3213 S12: -0.0949 S13: -0.5350 REMARK 3 S21: -0.0160 S22: -0.0860 S23: 0.1503 REMARK 3 S31: 0.3320 S32: -0.3235 S33: -0.2353 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2CKL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-APR-06. REMARK 100 THE PDBE ID CODE IS EBI-28251. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15568 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.300 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 0.73000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.5 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.4 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG3350, 0.1M NAI, 0.05M REMARK 280 BIS-TRIS-PROPANE PH7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 13.54800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.54800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.54800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 COMPONENT OF THE POLYCOMB GROUP (PCG) MULTIPROTEIN PRC1 REMARK 400 COMPLEX, A COMPLEX REQUIRED TO MAINTAIN THE TRANSCRIPTIONALLY REMARK 400 REPRESSIVE STATE OF MANY GENES, INCLUDING HOX GENES, THROUGHOUT REMARK 400 DEVELOPMENT. E3 UBIQUITIN LIGASE PROTEIN THAT MEDIATES REMARK 400 MONOUBIQUITINATION OF LYS-119 OF HISTONE H2A, THEREBY PLAYING A REMARK 400 CENTRAL ROLE IN HISTONE CODE AND GENE REGULATION REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 ARG A 3 REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 465 ALA A 104 REMARK 465 ASP A 105 REMARK 465 ALA A 106 REMARK 465 ALA A 107 REMARK 465 ASN A 108 REMARK 465 GLY B -5 REMARK 465 PRO B -4 REMARK 465 LEU B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLN B 3 REMARK 465 ALA B 4 REMARK 465 VAL B 5 REMARK 465 GLN B 6 REMARK 465 THR B 7 REMARK 465 ASN B 8 REMARK 465 GLY B 9 REMARK 465 THR B 10 REMARK 465 GLN B 11 REMARK 465 PRO B 12 REMARK 465 LEU B 13 REMARK 465 SER B 14 REMARK 465 VAL B 40 REMARK 465 SER B 41 REMARK 465 PRO B 42 REMARK 465 ARG B 43 REMARK 465 PRO B 115 REMARK 465 SER B 116 REMARK 465 ARG B 117 REMARK 465 ASP B 118 REMARK 465 GLU B 119 REMARK 465 TYR B 120 REMARK 465 GLU B 121 REMARK 465 ALA B 122 REMARK 465 HIS B 123 REMARK 465 GLN B 124 REMARK 465 GLU B 125 REMARK 465 ARG B 126 REMARK 465 VAL B 127 REMARK 465 LEU B 128 REMARK 465 ALA B 129 REMARK 465 ARG B 130 REMARK 465 ILE B 131 REMARK 465 ASN B 132 REMARK 465 LYS B 133 REMARK 465 HIS B 134 REMARK 465 ASN B 135 REMARK 465 ASN B 136 REMARK 465 GLN B 137 REMARK 465 GLN B 138 REMARK 465 ALA B 139 REMARK 465 LEU B 140 REMARK 465 SER B 141 REMARK 465 HIS B 142 REMARK 465 SER B 143 REMARK 465 ILE B 144 REMARK 465 GLU B 145 REMARK 465 GLU B 146 REMARK 465 GLY B 147 REMARK 465 LEU B 148 REMARK 465 LYS B 149 REMARK 465 ILE B 150 REMARK 465 GLN B 151 REMARK 465 ALA B 152 REMARK 465 MET B 153 REMARK 465 ASN B 154 REMARK 465 ARG B 155 REMARK 465 LEU B 156 REMARK 465 GLN B 157 REMARK 465 ARG B 158 REMARK 465 GLY B 159 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 26 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 CYS B 72 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 63 -30.44 -145.41 REMARK 500 SER B 47 15.32 -68.58 REMARK 500 GLU B 48 -38.69 -131.90 REMARK 500 LEU B 55 18.70 53.39 REMARK 500 LYS B 85 37.15 -96.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1104 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 18 SG REMARK 620 2 CYS A 21 SG 109.4 REMARK 620 3 CYS A 39 SG 105.8 104.9 REMARK 620 4 CYS A 42 SG 113.4 110.9 112.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1105 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 56 SG REMARK 620 2 CYS A 34 SG 109.8 REMARK 620 3 HIS A 36 ND1 111.0 106.0 REMARK 620 4 CYS A 53 SG 111.3 109.9 108.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1115 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 69 ND1 REMARK 620 2 CYS B 87 SG 104.7 REMARK 620 3 CYS B 67 SG 115.9 111.3 REMARK 620 4 CYS B 90 SG 110.1 114.9 100.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1116 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 75 SG REMARK 620 2 CYS B 72 SG 108.3 REMARK 620 3 CYS B 51 SG 113.2 109.8 REMARK 620 4 CYS B 54 SG 108.1 106.6 110.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1116 DBREF 2CKL A 1 108 UNP P25916 PCGF4_MOUSE 1 108 DBREF 2CKL B -5 0 PDB 2CKL 2CKL -5 0 DBREF 2CKL B 1 159 UNP Q9CQJ4 RING2_MOUSE 1 159 SEQRES 1 A 108 MET HIS ARG THR THR ARG ILE LYS ILE THR GLU LEU ASN SEQRES 2 A 108 PRO HIS LEU MET CYS VAL LEU CYS GLY GLY TYR PHE ILE SEQRES 3 A 108 ASP ALA THR THR ILE ILE GLU CYS LEU HIS SER PHE CYS SEQRES 4 A 108 LYS THR CYS ILE VAL ARG TYR LEU GLU THR SER LYS TYR SEQRES 5 A 108 CYS PRO ILE CYS ASP VAL GLN VAL HIS LYS THR ARG PRO SEQRES 6 A 108 LEU LEU ASN ILE ARG SER ASP LYS THR LEU GLN ASP ILE SEQRES 7 A 108 VAL TYR LYS LEU VAL PRO GLY LEU PHE LYS ASN GLU MET SEQRES 8 A 108 LYS ARG ARG ARG ASP PHE TYR ALA ALA HIS PRO SER ALA SEQRES 9 A 108 ASP ALA ALA ASN SEQRES 1 B 165 GLY PRO LEU GLY SER HIS MET SER GLN ALA VAL GLN THR SEQRES 2 B 165 ASN GLY THR GLN PRO LEU SER LYS THR TRP GLU LEU SER SEQRES 3 B 165 LEU TYR GLU LEU GLN ARG THR PRO GLN GLU ALA ILE THR SEQRES 4 B 165 ASP GLY LEU GLU ILE VAL VAL SER PRO ARG SER LEU HIS SEQRES 5 B 165 SER GLU LEU MET CYS PRO ILE CYS LEU ASP MET LEU LYS SEQRES 6 B 165 ASN THR MET THR THR LYS GLU CYS LEU HIS ARG PHE CYS SEQRES 7 B 165 ALA ASP CYS ILE ILE THR ALA LEU ARG SER GLY ASN LYS SEQRES 8 B 165 GLU CYS PRO THR CYS ARG LYS LYS LEU VAL SER LYS ARG SEQRES 9 B 165 SER LEU ARG PRO ASP PRO ASN PHE ASP ALA LEU ILE SER SEQRES 10 B 165 LYS ILE TYR PRO SER ARG ASP GLU TYR GLU ALA HIS GLN SEQRES 11 B 165 GLU ARG VAL LEU ALA ARG ILE ASN LYS HIS ASN ASN GLN SEQRES 12 B 165 GLN ALA LEU SER HIS SER ILE GLU GLU GLY LEU LYS ILE SEQRES 13 B 165 GLN ALA MET ASN ARG LEU GLN ARG GLY HET ZN A1104 1 HET ZN A1105 1 HET IOD A1106 1 HET ZN B1115 1 HET ZN B1116 1 HET IOD B1117 1 HETNAM ZN ZINC ION HETNAM IOD IODIDE ION FORMUL 3 ZN 4(ZN 2+) FORMUL 5 IOD 2(I 1-) FORMUL 9 HOH *123(H2 O) HELIX 1 1 ILE A 9 ASN A 13 1 5 HELIX 2 2 PRO A 14 LEU A 16 5 3 HELIX 3 3 LYS A 40 GLU A 48 1 9 HELIX 4 4 ARG A 64 LEU A 67 5 4 HELIX 5 5 ASP A 72 VAL A 83 1 12 HELIX 6 6 GLY A 85 HIS A 101 1 17 HELIX 7 7 SER B 20 ARG B 26 1 7 HELIX 8 8 LEU B 45 MET B 50 1 6 HELIX 9 9 ALA B 73 SER B 82 1 10 HELIX 10 10 SER B 96 ARG B 98 5 3 HELIX 11 11 ASP B 103 TYR B 114 1 12 SHEET 1 AA 2 ILE A 7 LYS A 8 0 SHEET 2 AA 2 GLU B 37 ILE B 38 -1 O ILE B 38 N ILE A 7 SHEET 1 AB 3 SER A 37 CYS A 39 0 SHEET 2 AB 3 ALA A 28 ILE A 31 -1 O THR A 29 N PHE A 38 SHEET 3 AB 3 ILE A 69 SER A 71 -1 O ARG A 70 N THR A 30 SHEET 1 BA 3 ARG B 70 CYS B 72 0 SHEET 2 BA 3 THR B 61 THR B 64 -1 O MET B 62 N PHE B 71 SHEET 3 BA 3 LEU B 100 PRO B 102 -1 O ARG B 101 N THR B 63 LINK ZN ZN A1104 SG CYS A 18 1555 1555 2.37 LINK ZN ZN A1104 SG CYS A 21 1555 1555 2.37 LINK ZN ZN A1104 SG CYS A 39 1555 1555 2.37 LINK ZN ZN A1104 SG CYS A 42 1555 1555 2.31 LINK ZN ZN A1105 SG CYS A 56 1555 1555 2.33 LINK ZN ZN A1105 SG CYS A 34 1555 1555 2.29 LINK ZN ZN A1105 ND1 HIS A 36 1555 1555 1.99 LINK ZN ZN A1105 SG CYS A 53 1555 1555 2.25 LINK ZN ZN B1115 SG CYS B 87 1555 1555 2.42 LINK ZN ZN B1115 SG CYS B 67 1555 1555 2.35 LINK ZN ZN B1115 SG CYS B 90 1555 1555 2.38 LINK ZN ZN B1115 ND1 HIS B 69 1555 1555 2.05 LINK ZN ZN B1116 SG CYS B 72 1555 1555 2.29 LINK ZN ZN B1116 SG CYS B 51 1555 1555 2.39 LINK ZN ZN B1116 SG CYS B 54 1555 1555 2.28 LINK ZN ZN B1116 SG CYS B 75 1555 1555 2.52 SITE 1 AC1 4 CYS A 18 CYS A 21 CYS A 39 CYS A 42 SITE 1 AC2 4 CYS A 34 HIS A 36 CYS A 53 CYS A 56 SITE 1 AC3 1 ARG A 95 SITE 1 AC4 4 CYS B 67 HIS B 69 CYS B 87 CYS B 90 SITE 1 AC5 4 CYS B 51 CYS B 54 CYS B 72 CYS B 75 CRYST1 120.046 120.046 27.096 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008330 0.004809 0.000000 0.00000 SCALE2 0.000000 0.009619 0.000000 0.00000 SCALE3 0.000000 0.000000 0.036906 0.00000