HEADER TRANSFERASE 20-APR-06 2CKO TITLE CRYSTAL STRUCTURE OF HUMAN CHOLINE KINASE ALPHA 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLINE KINASE ALPHA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SPLICE ISOFORM 2, RESIDUES 50-439; COMPND 5 SYNONYM: CK, CHETK-ALPHA; COMPND 6 EC: 2.7.1.32; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-RB KEYWDS KINASE, TRANSFERASE, CHOLINE KINASE, PHOSPHATYDILCHOLINE, ALTERNATIVE KEYWDS 2 SPLICING EXPDTA X-RAY DIFFRACTION AUTHOR E.MALITO,A.LAVIE REVDAT 4 13-DEC-23 2CKO 1 REMARK REVDAT 3 24-FEB-09 2CKO 1 VERSN REVDAT 2 08-NOV-06 2CKO 1 JRNL REVDAT 1 04-OCT-06 2CKO 0 JRNL AUTH E.MALITO,N.SEKULIC,W.C.TOO,M.KONRAD,A.LAVIE JRNL TITL ELUCIDATION OF HUMAN CHOLINE KINASE CRYSTAL STRUCTURES IN JRNL TITL 2 COMPLEX WITH THE PRODUCTS ADP OR PHOSPHOCHOLINE. JRNL REF J.MOL.BIOL. V. 364 136 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 17007874 JRNL DOI 10.1016/J.JMB.2006.08.084 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 45480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5080 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3273 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 355 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5686 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 417 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.31000 REMARK 3 B22 (A**2) : 2.01000 REMARK 3 B33 (A**2) : -0.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.240 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.210 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.237 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5847 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7872 ; 1.371 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 685 ; 5.583 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 283 ;33.366 ;23.074 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1053 ;16.103 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;18.464 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 822 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4427 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2387 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3992 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 334 ; 0.185 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.229 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.156 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3583 ; 0.885 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5521 ; 1.418 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2654 ; 2.066 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2351 ; 3.077 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CKO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-06. REMARK 100 THE DEPOSITION ID IS D_1290028474. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50560 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 17.90 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 17.90 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1NW1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M MGCL2, 15% PEG 3350, 0.2M NAF, REMARK 280 PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.09000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.08500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.41000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.08500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.09000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.41000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 50 REMARK 465 GLN A 51 REMARK 465 GLN A 52 REMARK 465 PRO A 53 REMARK 465 PRO A 54 REMARK 465 LEU A 55 REMARK 465 ALA A 56 REMARK 465 LEU A 57 REMARK 465 PRO A 58 REMARK 465 PRO A 59 REMARK 465 PRO A 60 REMARK 465 PRO A 61 REMARK 465 PRO A 62 REMARK 465 LEU A 63 REMARK 465 PRO A 64 REMARK 465 LEU A 65 REMARK 465 PRO A 66 REMARK 465 LEU A 67 REMARK 465 PRO A 68 REMARK 465 LEU A 69 REMARK 465 PRO A 70 REMARK 465 GLN A 71 REMARK 465 PRO A 72 REMARK 465 PRO A 73 REMARK 465 PRO A 74 REMARK 465 PRO A 75 REMARK 465 GLN A 76 REMARK 465 PRO A 77 REMARK 465 PRO A 78 REMARK 465 ALA A 79 REMARK 465 ASP A 80 REMARK 465 GLU A 81 REMARK 465 GLN A 82 REMARK 465 PRO A 83 REMARK 465 GLU A 84 REMARK 465 PRO A 85 REMARK 465 ARG A 86 REMARK 465 THR A 87 REMARK 465 LEU A 120 REMARK 465 LEU A 152 REMARK 465 GLN A 153 REMARK 465 VAL A 154 REMARK 465 GLY A 155 REMARK 465 ALA A 156 REMARK 465 GLU A 175 REMARK 465 ALA A 176 REMARK 465 GLY B 50 REMARK 465 GLN B 51 REMARK 465 GLN B 52 REMARK 465 PRO B 53 REMARK 465 PRO B 54 REMARK 465 LEU B 55 REMARK 465 ALA B 56 REMARK 465 LEU B 57 REMARK 465 PRO B 58 REMARK 465 PRO B 59 REMARK 465 PRO B 60 REMARK 465 PRO B 61 REMARK 465 PRO B 62 REMARK 465 LEU B 63 REMARK 465 PRO B 64 REMARK 465 LEU B 65 REMARK 465 PRO B 66 REMARK 465 LEU B 67 REMARK 465 PRO B 68 REMARK 465 LEU B 69 REMARK 465 PRO B 70 REMARK 465 GLN B 71 REMARK 465 PRO B 72 REMARK 465 PRO B 73 REMARK 465 PRO B 74 REMARK 465 PRO B 75 REMARK 465 GLN B 76 REMARK 465 PRO B 77 REMARK 465 PRO B 78 REMARK 465 ALA B 79 REMARK 465 ASP B 80 REMARK 465 GLU B 81 REMARK 465 GLN B 82 REMARK 465 PRO B 83 REMARK 465 GLU B 84 REMARK 465 PRO B 85 REMARK 465 ARG B 86 REMARK 465 ALA B 150 REMARK 465 ILE B 151 REMARK 465 LEU B 152 REMARK 465 GLN B 153 REMARK 465 VAL B 154 REMARK 465 GLY B 155 REMARK 465 ALA B 156 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 88 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 136 CG CD1 CD2 REMARK 470 ILE A 151 CG1 CG2 CD1 REMARK 470 GLU A 267 CG CD OE1 OE2 REMARK 470 GLU A 332 CG CD OE1 OE2 REMARK 470 ASN A 388 CG OD1 ND2 REMARK 470 GLU A 396 CG CD OE1 OE2 REMARK 470 GLU A 397 CG CD OE1 OE2 REMARK 470 THR B 87 OG1 CG2 REMARK 470 GLU B 175 CG CD OE1 OE2 REMARK 470 LYS B 247 CG CD CE NZ REMARK 470 GLU B 319 CG CD OE1 OE2 REMARK 470 GLU B 332 CG CD OE1 OE2 REMARK 470 ASN B 388 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 392 O HOH A 2183 2.12 REMARK 500 OD1 ASP B 389 O HOH B 2169 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 102 -6.54 -57.78 REMARK 500 ILE A 116 -36.49 -138.29 REMARK 500 ASN A 122 63.72 -156.47 REMARK 500 GLU A 139 141.35 -34.42 REMARK 500 PRO A 241 42.00 -79.11 REMARK 500 ASN A 281 72.77 60.02 REMARK 500 ASN A 305 -4.50 77.72 REMARK 500 ASP A 306 44.03 -150.97 REMARK 500 ASP A 330 74.46 58.06 REMARK 500 PHE A 331 32.47 -97.67 REMARK 500 TYR A 359 135.83 -39.35 REMARK 500 ASN B 122 53.42 32.49 REMARK 500 SER B 211 171.99 179.64 REMARK 500 PRO B 241 40.00 -78.20 REMARK 500 ASN B 281 74.98 59.41 REMARK 500 ASN B 305 -2.15 76.82 REMARK 500 ASP B 306 43.07 -151.03 REMARK 500 ASP B 330 66.83 60.92 REMARK 500 PHE B 331 39.96 -90.24 REMARK 500 PHE B 361 16.88 80.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2014 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A2034 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A2038 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A2106 DISTANCE = 7.40 ANGSTROMS REMARK 525 HOH B2038 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH B2057 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH B2078 DISTANCE = 6.07 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT B 1458 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTT B1458 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CKP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN CHOLINE KINASE ALPHA-2 IN COMPLEX WITH REMARK 900 ADP REMARK 900 RELATED ID: 2CKQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN CHOLINE KINASE ALPHA 2 IN COMPLEX WITH REMARK 900 PHOSPHOCHOLINE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE DESCRIBES THE HUMAN CHOLINE KINASE ISOFORM REMARK 999 ALFA-2, ACCORDING TO AYOAMA ET AL., 2000. THE UNIPROT REMARK 999 DATABASE DESCRIBES IT AS ALFA-1. MOREOVER, THE SEQUENCE REMARK 999 FROM OUR CONSTRUCT LACKS THE FIRST N-TER 49 RESIDUES. REMARK 999 REMARK 999 THE SEQUENCE BELOW CORRESPONDS TO ISOFORM 2 OF CHOLINE REMARK 999 KINASE (FTID: VSP_009683) DBREF 2CKO A 50 156 UNP P35790 CHKA_HUMAN 50 156 DBREF 2CKO A 175 457 UNP P35790 CHKA_HUMAN 157 439 DBREF 2CKO B 50 156 UNP P35790 CHKA_HUMAN 50 156 DBREF 2CKO B 175 457 UNP P35790 CHKA_HUMAN 157 439 SEQADV 2CKO SER A 220 UNP P35790 GLY 202 CONFLICT SEQADV 2CKO LEU A 422 UNP P35790 GLN 404 CONFLICT SEQADV 2CKO SER B 220 UNP P35790 GLY 202 CONFLICT SEQADV 2CKO LEU B 422 UNP P35790 GLN 404 CONFLICT SEQRES 1 A 390 GLY GLN GLN PRO PRO LEU ALA LEU PRO PRO PRO PRO PRO SEQRES 2 A 390 LEU PRO LEU PRO LEU PRO LEU PRO GLN PRO PRO PRO PRO SEQRES 3 A 390 GLN PRO PRO ALA ASP GLU GLN PRO GLU PRO ARG THR ARG SEQRES 4 A 390 ARG ARG ALA TYR LEU TRP CYS LYS GLU PHE LEU PRO GLY SEQRES 5 A 390 ALA TRP ARG GLY LEU ARG GLU ASP GLU PHE HIS ILE SER SEQRES 6 A 390 VAL ILE ARG GLY GLY LEU SER ASN MET LEU PHE GLN CYS SEQRES 7 A 390 SER LEU PRO ASP THR THR ALA THR LEU GLY ASP GLU PRO SEQRES 8 A 390 ARG LYS VAL LEU LEU ARG LEU TYR GLY ALA ILE LEU GLN SEQRES 9 A 390 VAL GLY ALA GLU ALA MET VAL LEU GLU SER VAL MET PHE SEQRES 10 A 390 ALA ILE LEU ALA GLU ARG SER LEU GLY PRO LYS LEU TYR SEQRES 11 A 390 GLY ILE PHE PRO GLN GLY ARG LEU GLU GLN PHE ILE PRO SEQRES 12 A 390 SER ARG ARG LEU ASP THR GLU GLU LEU SER LEU PRO ASP SEQRES 13 A 390 ILE SER ALA GLU ILE ALA GLU LYS MET ALA THR PHE HIS SEQRES 14 A 390 GLY MET LYS MET PRO PHE ASN LYS GLU PRO LYS TRP LEU SEQRES 15 A 390 PHE GLY THR MET GLU LYS TYR LEU LYS GLU VAL LEU ARG SEQRES 16 A 390 ILE LYS PHE THR GLU GLU SER ARG ILE LYS LYS LEU HIS SEQRES 17 A 390 LYS LEU LEU SER TYR ASN LEU PRO LEU GLU LEU GLU ASN SEQRES 18 A 390 LEU ARG SER LEU LEU GLU SER THR PRO SER PRO VAL VAL SEQRES 19 A 390 PHE CYS HIS ASN ASP CYS GLN GLU GLY ASN ILE LEU LEU SEQRES 20 A 390 LEU GLU GLY ARG GLU ASN SER GLU LYS GLN LYS LEU MET SEQRES 21 A 390 LEU ILE ASP PHE GLU TYR SER SER TYR ASN TYR ARG GLY SEQRES 22 A 390 PHE ASP ILE GLY ASN HIS PHE CYS GLU TRP MET TYR ASP SEQRES 23 A 390 TYR SER TYR GLU LYS TYR PRO PHE PHE ARG ALA ASN ILE SEQRES 24 A 390 ARG LYS TYR PRO THR LYS LYS GLN GLN LEU HIS PHE ILE SEQRES 25 A 390 SER SER TYR LEU PRO ALA PHE GLN ASN ASP PHE GLU ASN SEQRES 26 A 390 LEU SER THR GLU GLU LYS SER ILE ILE LYS GLU GLU MET SEQRES 27 A 390 LEU LEU GLU VAL ASN ARG PHE ALA LEU ALA SER HIS PHE SEQRES 28 A 390 LEU TRP GLY LEU TRP SER ILE VAL GLN ALA LYS ILE SER SEQRES 29 A 390 SER ILE GLU PHE GLY TYR MET ASP TYR ALA GLN ALA ARG SEQRES 30 A 390 PHE ASP ALA TYR PHE HIS GLN LYS ARG LYS LEU GLY VAL SEQRES 1 B 390 GLY GLN GLN PRO PRO LEU ALA LEU PRO PRO PRO PRO PRO SEQRES 2 B 390 LEU PRO LEU PRO LEU PRO LEU PRO GLN PRO PRO PRO PRO SEQRES 3 B 390 GLN PRO PRO ALA ASP GLU GLN PRO GLU PRO ARG THR ARG SEQRES 4 B 390 ARG ARG ALA TYR LEU TRP CYS LYS GLU PHE LEU PRO GLY SEQRES 5 B 390 ALA TRP ARG GLY LEU ARG GLU ASP GLU PHE HIS ILE SER SEQRES 6 B 390 VAL ILE ARG GLY GLY LEU SER ASN MET LEU PHE GLN CYS SEQRES 7 B 390 SER LEU PRO ASP THR THR ALA THR LEU GLY ASP GLU PRO SEQRES 8 B 390 ARG LYS VAL LEU LEU ARG LEU TYR GLY ALA ILE LEU GLN SEQRES 9 B 390 VAL GLY ALA GLU ALA MET VAL LEU GLU SER VAL MET PHE SEQRES 10 B 390 ALA ILE LEU ALA GLU ARG SER LEU GLY PRO LYS LEU TYR SEQRES 11 B 390 GLY ILE PHE PRO GLN GLY ARG LEU GLU GLN PHE ILE PRO SEQRES 12 B 390 SER ARG ARG LEU ASP THR GLU GLU LEU SER LEU PRO ASP SEQRES 13 B 390 ILE SER ALA GLU ILE ALA GLU LYS MET ALA THR PHE HIS SEQRES 14 B 390 GLY MET LYS MET PRO PHE ASN LYS GLU PRO LYS TRP LEU SEQRES 15 B 390 PHE GLY THR MET GLU LYS TYR LEU LYS GLU VAL LEU ARG SEQRES 16 B 390 ILE LYS PHE THR GLU GLU SER ARG ILE LYS LYS LEU HIS SEQRES 17 B 390 LYS LEU LEU SER TYR ASN LEU PRO LEU GLU LEU GLU ASN SEQRES 18 B 390 LEU ARG SER LEU LEU GLU SER THR PRO SER PRO VAL VAL SEQRES 19 B 390 PHE CYS HIS ASN ASP CYS GLN GLU GLY ASN ILE LEU LEU SEQRES 20 B 390 LEU GLU GLY ARG GLU ASN SER GLU LYS GLN LYS LEU MET SEQRES 21 B 390 LEU ILE ASP PHE GLU TYR SER SER TYR ASN TYR ARG GLY SEQRES 22 B 390 PHE ASP ILE GLY ASN HIS PHE CYS GLU TRP MET TYR ASP SEQRES 23 B 390 TYR SER TYR GLU LYS TYR PRO PHE PHE ARG ALA ASN ILE SEQRES 24 B 390 ARG LYS TYR PRO THR LYS LYS GLN GLN LEU HIS PHE ILE SEQRES 25 B 390 SER SER TYR LEU PRO ALA PHE GLN ASN ASP PHE GLU ASN SEQRES 26 B 390 LEU SER THR GLU GLU LYS SER ILE ILE LYS GLU GLU MET SEQRES 27 B 390 LEU LEU GLU VAL ASN ARG PHE ALA LEU ALA SER HIS PHE SEQRES 28 B 390 LEU TRP GLY LEU TRP SER ILE VAL GLN ALA LYS ILE SER SEQRES 29 B 390 SER ILE GLU PHE GLY TYR MET ASP TYR ALA GLN ALA ARG SEQRES 30 B 390 PHE ASP ALA TYR PHE HIS GLN LYS ARG LYS LEU GLY VAL HET DTT A1458 8 HET DTT B1458 8 HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 3 DTT 2(C4 H10 O2 S2) FORMUL 5 HOH *417(H2 O) HELIX 1 1 ARG A 88 LEU A 99 1 12 HELIX 2 2 PRO A 100 ARG A 104 5 5 HELIX 3 3 ARG A 107 PHE A 111 5 5 HELIX 4 4 MET A 177 ARG A 190 1 14 HELIX 5 5 ASP A 215 SER A 220 5 6 HELIX 6 6 LEU A 221 GLY A 237 1 17 HELIX 7 7 LYS A 247 LEU A 261 1 15 HELIX 8 8 GLU A 267 SER A 279 1 13 HELIX 9 9 ASN A 281 SER A 295 1 15 HELIX 10 10 GLN A 308 GLY A 310 5 3 HELIX 11 11 ARG A 339 TRP A 350 1 12 HELIX 12 12 ILE A 366 TYR A 369 5 4 HELIX 13 13 THR A 371 GLN A 387 1 17 HELIX 14 14 SER A 394 SER A 431 1 38 HELIX 15 15 GLY A 436 GLY A 456 1 21 HELIX 16 16 THR B 87 LEU B 99 1 13 HELIX 17 17 PRO B 100 LEU B 106 5 7 HELIX 18 18 ARG B 107 PHE B 111 5 5 HELIX 19 19 GLU B 175 ARG B 190 1 16 HELIX 20 20 ASP B 215 SER B 220 5 6 HELIX 21 21 LEU B 221 MET B 238 1 18 HELIX 22 22 LYS B 247 ILE B 263 1 17 HELIX 23 23 GLU B 267 SER B 279 1 13 HELIX 24 24 ASN B 281 SER B 295 1 15 HELIX 25 25 GLN B 308 GLY B 310 5 3 HELIX 26 26 ARG B 339 GLU B 349 1 11 HELIX 27 27 ILE B 366 TYR B 369 5 4 HELIX 28 28 THR B 371 GLN B 387 1 17 HELIX 29 29 ASP B 389 LEU B 393 5 5 HELIX 30 30 SER B 394 SER B 431 1 38 HELIX 31 31 GLY B 436 GLY B 456 1 21 SHEET 1 AA 5 HIS A 112 ARG A 117 0 SHEET 2 AA 5 MET A 123 SER A 128 -1 O LEU A 124 N ILE A 116 SHEET 3 AA 5 LYS A 142 LEU A 147 -1 O VAL A 143 N CYS A 127 SHEET 4 AA 5 GLY A 203 GLN A 207 -1 O ARG A 204 N ARG A 146 SHEET 5 AA 5 LEU A 196 PHE A 200 -1 N TYR A 197 O LEU A 205 SHEET 1 AB 3 SER A 211 ARG A 213 0 SHEET 2 AB 3 ILE A 312 LEU A 315 -1 O LEU A 314 N ARG A 212 SHEET 3 AB 3 LEU A 326 LEU A 328 -1 O MET A 327 N LEU A 313 SHEET 1 AC 2 VAL A 300 CYS A 303 0 SHEET 2 AC 2 SER A 335 TYR A 338 -1 O SER A 335 N CYS A 303 SHEET 1 AD 2 TYR A 352 ASP A 353 0 SHEET 2 AD 2 ARG A 363 ALA A 364 -1 O ARG A 363 N ASP A 353 SHEET 1 BA 5 HIS B 112 ARG B 117 0 SHEET 2 BA 5 MET B 123 SER B 128 -1 O LEU B 124 N ILE B 116 SHEET 3 BA 5 LYS B 142 LEU B 147 -1 O VAL B 143 N CYS B 127 SHEET 4 BA 5 GLY B 203 GLN B 207 -1 O ARG B 204 N ARG B 146 SHEET 5 BA 5 LEU B 196 PHE B 200 -1 N TYR B 197 O LEU B 205 SHEET 1 BB 3 SER B 211 ARG B 213 0 SHEET 2 BB 3 ILE B 312 LEU B 315 -1 O LEU B 314 N ARG B 212 SHEET 3 BB 3 LEU B 326 LEU B 328 -1 O MET B 327 N LEU B 313 SHEET 1 BC 2 VAL B 300 CYS B 303 0 SHEET 2 BC 2 SER B 335 TYR B 338 -1 O SER B 335 N CYS B 303 SHEET 1 BD 2 TYR B 352 ASP B 353 0 SHEET 2 BD 2 ARG B 363 ALA B 364 -1 O ARG B 363 N ASP B 353 CISPEP 1 TYR A 359 PRO A 360 0 1.35 CISPEP 2 TYR B 359 PRO B 360 0 13.28 SITE 1 AC1 3 GLN B 308 HOH B2191 TYR A 440 SITE 1 AC2 2 GLN B 308 HOH B2191 CRYST1 56.180 122.820 132.170 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017800 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008142 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007566 0.00000