HEADER SIGNALING PROTEIN 21-APR-06 2CKU TITLE SOLUTION STRUCTURE OF 2F13F1 FROM HUMAN FIBRONECTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBRONECTIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: 2ND AND 3RD F1 MODULES, RESIDUES 93-182 (62-151 IN COMPND 5 COORDINATES); COMPND 6 SYNONYM: FN, COLD-INSOLUBE GLOBULIN, CIG; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS GLYCOPROTEIN, CELL ADHESION, PHOSPHORYLATION, PYRROLIDONE CARBOXYLIC KEYWDS 2 ACID, SIGNALING PROTEIN, SULFATION, ACUTE PHASE, FIBRONECTIN, MODULE KEYWDS 3 PAIR, HEPARIN-BINDING, ALTERNATIVE SPLICING EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR J.M.WERNER,J.R.POTTS REVDAT 6 16-OCT-24 2CKU 1 REMARK REVDAT 5 23-JUN-21 2CKU 1 REMARK REVDAT 4 21-AUG-19 2CKU 1 REMARK REVDAT 3 24-FEB-09 2CKU 1 VERSN REVDAT 2 17-APR-07 2CKU 1 JRNL REVDAT 1 03-APR-07 2CKU 0 JRNL AUTH E.RUDINO-PINERA,R.B.G.RAVELLI,G.M.SHELDRICK,M.H.NANAO, JRNL AUTH 2 V.V.KOROSTELEV,J.M.WERNER,U.SCHWARZ-LINEK,J.R.POTTS, JRNL AUTH 3 E.F.GARMAN JRNL TITL THE SOLUTION AND CRYSTAL STRUCTURES OF A MODULE PAIR FROM JRNL TITL 2 THE STAPHYLOCOCCUS AUREUS-BINDING SITE OF HUMAN JRNL TITL 3 FIBRONECTIN-A TALE WITH A TWIST. JRNL REF J.MOL.BIOL. V. 368 833 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17368672 JRNL DOI 10.1016/J.JMB.2007.02.061 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. STRUCTURES ARE OVERLAYED ON SECONDARY REMARK 3 STRUCTURE OF 2F1. REMARK 4 REMARK 4 2CKU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-APR-06. REMARK 100 THE DEPOSITION ID IS D_1290028510. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW REMARK 210 METHOD USED : CNS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING A UNLABELLED, 15N REMARK 210 -LABELLED AND 15N,13C-LABELLED 2F13F1 AND USING DATA FROM REMARK 210 HOMONUCLEAR 2D, 15N-3D AND TRIPLE-RESONANCE 3D EXPERIMENTS. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 ALA A 62 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 86 73.23 46.55 REMARK 500 1 ALA A 97 114.54 70.99 REMARK 500 1 HIS A 111 -143.28 -135.10 REMARK 500 1 GLU A 112 175.95 89.80 REMARK 500 1 TRP A 123 55.21 -141.28 REMARK 500 1 ARG A 124 98.23 -55.66 REMARK 500 1 PRO A 126 177.97 -39.71 REMARK 500 1 LYS A 143 -54.18 -160.77 REMARK 500 2 ASP A 86 77.51 48.32 REMARK 500 2 ARG A 99 -67.54 -133.88 REMARK 500 2 ILE A 106 155.86 -45.37 REMARK 500 2 GLU A 112 138.15 167.30 REMARK 500 2 ARG A 124 102.85 -53.33 REMARK 500 2 PRO A 126 174.07 -40.28 REMARK 500 2 LYS A 143 -44.59 -144.50 REMARK 500 3 ASP A 86 74.31 42.51 REMARK 500 3 ALA A 97 55.67 -170.85 REMARK 500 3 ARG A 99 -26.89 -175.93 REMARK 500 3 ASN A 108 59.25 -93.28 REMARK 500 3 GLU A 112 166.82 170.90 REMARK 500 3 PRO A 126 178.61 -43.15 REMARK 500 3 LYS A 143 43.36 -144.52 REMARK 500 4 LYS A 69 -17.98 -48.97 REMARK 500 4 ASP A 86 69.10 37.30 REMARK 500 4 ALA A 97 110.05 62.42 REMARK 500 4 GLU A 112 140.05 167.35 REMARK 500 4 PRO A 126 179.97 -41.08 REMARK 500 4 LYS A 143 -66.65 -147.67 REMARK 500 5 ASP A 86 74.27 40.71 REMARK 500 5 ALA A 97 150.21 65.76 REMARK 500 5 ASN A 108 43.79 -93.33 REMARK 500 5 GLU A 112 126.82 165.41 REMARK 500 5 PRO A 126 179.50 -43.00 REMARK 500 5 MET A 133 107.20 -57.72 REMARK 500 6 ASP A 86 -77.02 55.65 REMARK 500 6 SER A 87 30.94 -158.26 REMARK 500 6 ILE A 95 74.70 -105.74 REMARK 500 6 ALA A 97 45.56 -158.65 REMARK 500 6 ARG A 99 -37.58 -170.14 REMARK 500 6 HIS A 111 -140.70 -134.94 REMARK 500 6 GLU A 112 163.94 89.20 REMARK 500 6 PRO A 126 178.83 -41.93 REMARK 500 7 ASP A 86 77.29 49.42 REMARK 500 7 ALA A 97 119.88 -160.54 REMARK 500 7 ILE A 106 155.23 -43.57 REMARK 500 7 GLU A 112 159.54 171.88 REMARK 500 7 ASN A 141 34.83 -146.19 REMARK 500 7 LYS A 143 -54.40 -163.63 REMARK 500 8 ASP A 86 57.00 33.91 REMARK 500 8 ARG A 99 48.84 -149.11 REMARK 500 REMARK 500 THIS ENTRY HAS 99 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1E88 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF 6F11F22F2, A COMPACT THREE-MODULE FRAGMENT OF REMARK 900 THE GELATIN-BINDING DOMAIN OF HUMAN FIBRONECTIN REMARK 900 RELATED ID: 1E8B RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF 6F11F22F2, A COMPACT THREE-MODULE FRAGMENT OF REMARK 900 THE GELATIN-BINDING DOMAIN OF HUMAN FIBRONECTIN REMARK 900 RELATED ID: 1FBR RELATED DB: PDB REMARK 900 FOURTH AND FIFTH FIBRONECTIN TYPE I MODULE PAIR REMARK 900 RELATED ID: 1FNA RELATED DB: PDB REMARK 900 FIBRONECTIN CELL-ADHESION MODULE TYPE III-10 REMARK 900 RELATED ID: 1FNF RELATED DB: PDB REMARK 900 FRAGMENT OF HUMAN FIBRONECTIN ENCOMPASSING TYPE-III REPEATS 7 REMARK 900 THROUGH 10 REMARK 900 RELATED ID: 1FNH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HEPARIN AND INTEGRIN BINDING SEGMENT OF HUMAN REMARK 900 FIBRONECTIN REMARK 900 RELATED ID: 1J8K RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE FIBRONECTIN EDA DOMAIN , NMR, 20STRUCTURES REMARK 900 RELATED ID: 1O9A RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE COMPLEX OF 1F12F1 FROM FIBRONECTIN WITH REMARK 900 B3 FROM FNBB FROM S. DYSGALACTIAE REMARK 900 RELATED ID: 1OWW RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE FIRST TYPE III MODULE OF HUMANFIBRONECTIN REMARK 900 DETERMINED BY 1H, 15N NMR SPECTROSCOPY REMARK 900 RELATED ID: 1Q38 RELATED DB: PDB REMARK 900 ANASTELLIN REMARK 900 RELATED ID: 1QGB RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE N-TERMINAL F1 MODULE PAIR FROM HUMAN REMARK 900 FIBRONECTIN REMARK 900 RELATED ID: 1QO6 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF A PAIR OF MODULES FROM THE GELATIN-BINDING REMARK 900 DOMAIN OF FIBRONECTIN REMARK 900 RELATED ID: 1TTF RELATED DB: PDB REMARK 900 FIBRONECTIN (TENTH TYPE III MODULE) (NMR, 36 STRUCTURES) REMARK 900 RELATED ID: 1TTG RELATED DB: PDB REMARK 900 FIBRONECTIN (TENTH TYPE III MODULE) (NMR, RESTRAINED MINIMIZED REMARK 900 AVERAGE STRUCTURE) REMARK 900 RELATED ID: 2CG6 RELATED DB: PDB REMARK 900 SECOND AND THIRD FIBRONECTIN TYPE I MODULE PAIR (CRYSTAL FORM I) REMARK 900 RELATED ID: 2CG7 RELATED DB: PDB REMARK 900 SECOND AND THIRD FIBRONECTIN TYPE I MODULE PAIR (CRYSTAL FORM II). REMARK 900 RELATED ID: 2FN2 RELATED DB: PDB REMARK 900 SOLUTION NMR STRUCTURE OF THE GLYCOSYLATED SECOND TYPE TWO MODULE REMARK 900 OF FIBRONECTIN, 20 STRUCTURES REMARK 900 RELATED ID: 2FNB RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE FIBRONECTIN ED-B DOMAIN, NMR, 20 STRUCTURES DBREF 2CKU A 62 151 UNP P02751 FINC_HUMAN 93 182 SEQRES 1 A 90 ALA GLU GLU THR CYS PHE ASP LYS TYR THR GLY ASN THR SEQRES 2 A 90 TYR ARG VAL GLY ASP THR TYR GLU ARG PRO LYS ASP SER SEQRES 3 A 90 MET ILE TRP ASP CYS THR CYS ILE GLY ALA GLY ARG GLY SEQRES 4 A 90 ARG ILE SER CYS THR ILE ALA ASN ARG CYS HIS GLU GLY SEQRES 5 A 90 GLY GLN SER TYR LYS ILE GLY ASP THR TRP ARG ARG PRO SEQRES 6 A 90 HIS GLU THR GLY GLY TYR MET LEU GLU CYS VAL CYS LEU SEQRES 7 A 90 GLY ASN GLY LYS GLY GLU TRP THR CYS LYS PRO ILE SHEET 1 AA 2 THR A 65 PHE A 67 0 SHEET 2 AA 2 THR A 74 ARG A 76 -1 O TYR A 75 N CYS A 66 SHEET 1 AB 3 THR A 80 PRO A 84 0 SHEET 2 AB 3 ILE A 89 ILE A 95 -1 O TRP A 90 N ARG A 83 SHEET 3 AB 3 ARG A 101 ILE A 106 -1 O ARG A 101 N ILE A 95 SHEET 1 AC 2 CYS A 136 LEU A 139 0 SHEET 2 AC 2 GLU A 145 CYS A 148 -1 O GLU A 145 N LEU A 139 SSBOND 1 CYS A 66 CYS A 94 1555 1555 2.03 SSBOND 2 CYS A 92 CYS A 104 1555 1555 2.03 SSBOND 3 CYS A 110 CYS A 138 1555 1555 2.03 SSBOND 4 CYS A 136 CYS A 148 1555 1555 2.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1