HEADER HYDROLASE 24-APR-06 2CKW TITLE THE 2.3 A RESOLUTION STRUCTURE OF THE SAPPORO VIRUS RNA DEPENDANT RNA TITLE 2 POLYMERASE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA POLYMERASE, RESIDUES 1135-1649; COMPND 5 SYNONYM: SAPOVIRUS RNA-DEPENDANT RNA-POLYMERASE; COMPND 6 EC: 2.7.7.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SAPPORO VIRUS; SOURCE 3 ORGANISM_TAXID: 95342; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS HYDROLASE, NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, COVALENT KEYWDS 2 PROTEIN-RNA LINKAGE, POLYMERASE, RNA ELONGATION, TRANSFERASE KEYWDS 3 ACTIVITY, MUTANT, CAPSID PROTEIN, RNA REPLICATION, STRUCTURAL KEYWDS 4 PROTEIN, PROTEASE, HELICASE, TRANSFERASE, RNA-DIRECTED RNA KEYWDS 5 POLYMERASE, POLYPROTEIN, ATP-BINDING, THIOL PROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR S.W.B.FULLERTON,P.A.TUCKER,J.ROHAYEM,B.COUTARD,J.GEBHARDT, AUTHOR 2 A.GORBALENYA,B.CANARD REVDAT 6 13-DEC-23 2CKW 1 REMARK REVDAT 5 16-OCT-19 2CKW 1 REMARK REVDAT 4 24-JUL-19 2CKW 1 REMARK REVDAT 3 24-FEB-09 2CKW 1 VERSN REVDAT 2 06-FEB-07 2CKW 1 JRNL REVDAT 1 29-NOV-06 2CKW 0 JRNL AUTH S.W.B.FULLERTON,M.BLASCHKE,B.COUTARD,J.GEBHARDT, JRNL AUTH 2 A.GORBALENYA,B.CANARD,P.A.TUCKER,J.ROHAYEM JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF SAPOVIRUS JRNL TITL 2 RNA-DEPENDENT RNA POLYMERASE. JRNL REF J.VIROL. V. 81 1858 2007 JRNL REFN ISSN 0022-538X JRNL PMID 17121797 JRNL DOI 10.1128/JVI.01462-06 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 22378 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1209 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1659 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1760 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3766 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 271 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.328 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.230 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.905 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3899 ; 0.031 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5323 ; 2.461 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 490 ; 7.279 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;39.454 ;23.976 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 606 ;20.304 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.439 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 598 ; 0.208 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2991 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1920 ; 0.284 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2663 ; 0.319 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 245 ; 0.193 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 75 ; 0.242 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2518 ; 1.580 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3982 ; 2.455 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1589 ; 3.939 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1341 ; 5.987 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2CKW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-APR-06. REMARK 100 THE DEPOSITION ID IS D_1290028546. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.961 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27029 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.36400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1KHV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.21700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.38550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.94050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.38550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.21700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.94050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 376 REMARK 465 ALA A 377 REMARK 465 ALA A 378 REMARK 465 ASP A 379 REMARK 465 LYS A 380 REMARK 465 SER A 381 REMARK 465 ASP A 382 REMARK 465 ALA A 383 REMARK 465 ILE A 384 REMARK 465 VAL A 497 REMARK 465 PRO A 498 REMARK 465 ASP A 499 REMARK 465 PRO A 500 REMARK 465 VAL A 501 REMARK 465 GLY A 502 REMARK 465 HIS A 503 REMARK 465 THR A 504 REMARK 465 GLU A 505 REMARK 465 GLY A 506 REMARK 465 THR A 507 REMARK 465 HIS A 508 REMARK 465 LYS A 509 REMARK 465 ILE A 510 REMARK 465 VAL A 511 REMARK 465 PHE A 512 REMARK 465 GLU A 513 REMARK 465 MET A 514 REMARK 465 GLU A 515 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 82 CG ARG A 82 CD 0.154 REMARK 500 GLU A 174 CG GLU A 174 CD 0.106 REMARK 500 VAL A 308 CB VAL A 308 CG1 0.161 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 50 CB - CG - OD1 ANGL. DEV. = -10.6 DEGREES REMARK 500 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 52 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 MET A 60 CG - SD - CE ANGL. DEV. = -11.7 DEGREES REMARK 500 LEU A 164 CB - CG - CD1 ANGL. DEV. = -10.4 DEGREES REMARK 500 ARG A 205 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 205 NE - CZ - NH2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ASP A 222 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 435 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 54 30.56 -143.17 REMARK 500 GLU A 133 28.42 161.14 REMARK 500 PRO A 211 41.22 -96.31 REMARK 500 ASP A 222 51.57 -104.62 REMARK 500 SER A 273 -29.56 -164.89 REMARK 500 ASN A 288 -119.13 45.61 REMARK 500 CYS A 354 150.96 -47.31 REMARK 500 LEU A 393 49.20 36.66 REMARK 500 LYS A 394 16.35 57.48 REMARK 500 ALA A 422 -134.04 -150.70 REMARK 500 ARG A 424 147.69 -35.32 REMARK 500 ASN A 478 26.36 -62.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 132 GLU A 133 117.15 REMARK 500 GLU A 133 GLN A 134 121.09 REMARK 500 ALA A 198 PHE A 199 -148.05 REMARK 500 VAL A 272 SER A 273 -133.66 REMARK 500 SER A 273 CYS A 274 130.35 REMARK 500 GLY A 454 PRO A 455 -148.00 REMARK 500 REMARK 500 REMARK: NULL DBREF 2CKW A 1 515 UNP Q69014 POLN_MANCV 1135 1649 SEQRES 1 A 515 ASP GLU PHE GLN TRP LYS GLY LEU PRO VAL VAL LYS SER SEQRES 2 A 515 GLY LEU ASP VAL GLY GLY MET PRO THR GLY THR ARG TYR SEQRES 3 A 515 HIS ARG SER PRO ALA TRP PRO GLU GLU GLN PRO GLY GLU SEQRES 4 A 515 THR HIS ALA PRO ALA PRO PHE GLY SER GLY ASP LYS ARG SEQRES 5 A 515 TYR THR PHE SER GLN THR GLU MET LEU VAL ASN GLY LEU SEQRES 6 A 515 LYS PRO TYR THR GLU PRO THR ALA GLY VAL PRO PRO GLN SEQRES 7 A 515 LEU LEU SER ARG ALA VAL THR HIS VAL ARG SER TYR ILE SEQRES 8 A 515 GLU THR ILE ILE GLY THR HIS ARG SER PRO VAL LEU THR SEQRES 9 A 515 TYR HIS GLN ALA CYS GLU LEU LEU GLU ARG THR THR SER SEQRES 10 A 515 CYS GLY PRO PHE VAL GLN GLY LEU LYS GLY ASP TYR TRP SEQRES 11 A 515 ASP GLU GLU GLN GLN GLN TYR THR GLY VAL LEU ALA ASN SEQRES 12 A 515 HIS LEU GLU GLN ALA TRP ASP LYS ALA ASN LYS GLY ILE SEQRES 13 A 515 ALA PRO ARG ASN ALA TYR LYS LEU ALA LEU LYS ASP GLU SEQRES 14 A 515 LEU ARG PRO ILE GLU LYS ASN LYS ALA GLY LYS ARG ARG SEQRES 15 A 515 LEU LEU TRP GLY CYS ASP ALA ALA THR THR LEU ILE ALA SEQRES 16 A 515 THR ALA ALA PHE LYS ALA VAL ALA THR ARG LEU GLN VAL SEQRES 17 A 515 VAL THR PRO MET THR PRO VAL ALA VAL GLY ILE ASN MET SEQRES 18 A 515 ASP SER VAL GLN MET GLN VAL MET ASN ASP SER LEU LYS SEQRES 19 A 515 GLY GLY VAL LEU TYR CYS LEU ASP TYR SER LYS TRP ASP SEQRES 20 A 515 SER THR GLN ASN PRO ALA VAL THR ALA ALA SER LEU ALA SEQRES 21 A 515 ILE LEU GLU ARG PHE ALA GLU PRO HIS PRO ILE VAL SER SEQRES 22 A 515 CYS ALA ILE GLU ALA LEU SER SER PRO ALA GLU GLY TYR SEQRES 23 A 515 VAL ASN ASP ILE LYS PHE VAL THR ARG GLY GLY LEU PRO SEQRES 24 A 515 SER GLY MET PRO PHE THR SER VAL VAL ASN SER ILE ASN SEQRES 25 A 515 HIS MET ILE TYR VAL ALA ALA ALA ILE LEU GLN ALA TYR SEQRES 26 A 515 GLU SER HIS ASN VAL PRO TYR THR GLY ASN VAL PHE GLN SEQRES 27 A 515 VAL GLU THR ILE HIS THR TYR GLY ASP ASP CYS MET TYR SEQRES 28 A 515 SER VAL CYS PRO ALA THR ALA SER ILE PHE HIS THR VAL SEQRES 29 A 515 LEU ALA ASN LEU THR SER TYR GLY LEU LYS PRO THR ALA SEQRES 30 A 515 ALA ASP LYS SER ASP ALA ILE LYS PRO THR ASN THR PRO SEQRES 31 A 515 VAL PHE LEU LYS ARG THR PHE THR GLN THR PRO HIS GLY SEQRES 32 A 515 ILE ARG ALA LEU LEU ASP ILE THR SER ILE THR ARG GLN SEQRES 33 A 515 PHE TYR TRP LEU LYS ALA ASN ARG THR SER ASP PRO SER SEQRES 34 A 515 SER PRO PRO ALA PHE ASP ARG GLN ALA ARG SER ALA GLN SEQRES 35 A 515 LEU GLU ASN ALA LEU ALA TYR ALA SER GLN HIS GLY PRO SEQRES 36 A 515 VAL MET PHE ASP THR VAL ARG GLN ILE ALA ILE LYS THR SEQRES 37 A 515 ALA GLN GLY GLU GLY LEU VAL LEU VAL ASN THR ASN TYR SEQRES 38 A 515 ASP GLN ALA LEU ALA THR TYR ASN ALA TRP PHE ILE GLY SEQRES 39 A 515 GLY THR VAL PRO ASP PRO VAL GLY HIS THR GLU GLY THR SEQRES 40 A 515 HIS LYS ILE VAL PHE GLU MET GLU FORMUL 2 HOH *271(H2 O) HELIX 1 1 PHE A 46 ASP A 50 5 5 HELIX 2 2 SER A 56 LYS A 66 1 11 HELIX 3 3 PRO A 67 GLU A 70 5 4 HELIX 4 4 PRO A 76 GLY A 96 1 21 HELIX 5 5 THR A 104 LEU A 112 1 9 HELIX 6 6 LYS A 126 TYR A 129 5 4 HELIX 7 7 THR A 138 LYS A 154 1 17 HELIX 8 8 ILE A 173 ALA A 178 1 6 HELIX 9 9 ASP A 188 VAL A 208 1 21 HELIX 10 10 SER A 223 SER A 232 1 10 HELIX 11 11 TRP A 246 GLN A 250 5 5 HELIX 12 12 ASN A 251 ARG A 264 1 14 HELIX 13 13 PRO A 270 SER A 281 1 12 HELIX 14 14 PHE A 304 HIS A 328 1 25 HELIX 15 15 ASN A 335 GLU A 340 1 6 HELIX 16 16 CYS A 354 ILE A 360 1 7 HELIX 17 17 ILE A 360 TYR A 371 1 12 HELIX 18 18 ASP A 409 TYR A 418 1 10 HELIX 19 19 ASP A 435 GLN A 452 1 18 HELIX 20 20 GLY A 454 GLY A 473 1 20 HELIX 21 21 ASN A 480 GLY A 495 1 16 SHEET 1 AA 6 PHE A 3 TRP A 5 0 SHEET 2 AA 6 LEU A 8 LYS A 12 -1 O LEU A 8 N TRP A 5 SHEET 3 AA 6 ILE A 290 VAL A 293 -1 O LYS A 291 N VAL A 11 SHEET 4 AA 6 GLU A 284 VAL A 287 -1 O GLY A 285 N PHE A 292 SHEET 5 AA 6 ALA A 161 LEU A 166 1 O TYR A 162 N TYR A 286 SHEET 6 AA 6 LEU A 183 CYS A 187 -1 O LEU A 184 N ALA A 165 SHEET 1 AB 2 THR A 24 ARG A 28 0 SHEET 2 AB 2 TRP A 419 THR A 425 -1 O LEU A 420 N HIS A 27 SHEET 1 AC 2 HIS A 41 PRO A 43 0 SHEET 2 AC 2 LEU A 170 PRO A 172 -1 O ARG A 171 N ALA A 42 SHEET 1 AD 3 VAL A 237 TYR A 239 0 SHEET 2 AD 3 ASP A 348 VAL A 353 -1 O TYR A 351 N TYR A 239 SHEET 3 AD 3 THR A 341 TYR A 345 -1 O THR A 341 N SER A 352 SHEET 1 AE 3 VAL A 391 PHE A 392 0 SHEET 2 AE 3 ARG A 395 THR A 400 -1 O ARG A 395 N PHE A 392 SHEET 3 AE 3 GLY A 403 LEU A 408 -1 O GLY A 403 N THR A 400 CISPEP 1 THR A 210 PRO A 211 0 -4.21 CRYST1 58.434 93.881 94.771 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017113 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010652 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010552 0.00000