data_2CLC # _entry.id 2CLC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2CLC pdb_00002clc 10.2210/pdb2clc/pdb PDBE EBI-28582 ? ? WWPDB D_1290028582 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2CL0 unspecified 'CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H -RAS P21 IN COMPLEX WITH GPPNHP' PDB 2CL6 unspecified 'CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H -RAS P21 IN COMPLEX WITH S-CAGED GTP' PDB 2CL7 unspecified 'CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H -RAS P21 IN COMPLEX WITH GTP' PDB 2CLD unspecified 'CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H -RAS P21 IN COMPLEX WITH GDP (2)' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CLC _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2006-04-27 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Klink, B.U.' 1 'Goody, R.S.' 2 'Scheidig, A.J.' 3 # _citation.id primary _citation.title 'A Newly Designed Microspectrofluorometer for Kinetic Studies on Protein Crystals in Combination with X-Ray Diffraction' _citation.journal_abbrev Biophys.J. _citation.journal_volume 91 _citation.page_first 981 _citation.page_last ? _citation.year 2006 _citation.journal_id_ASTM BIOJAU _citation.country US _citation.journal_id_ISSN 0006-3495 _citation.journal_id_CSD 0030 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16698776 _citation.pdbx_database_id_DOI 10.1529/BIOPHYSJ.105.078931 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Klink, B.U.' 1 ? primary 'Goody, R.S.' 2 ? primary 'Scheidig, A.J.' 3 ? # _cell.entry_id 2CLC _cell.length_a 69.320 _cell.length_b 69.320 _cell.length_c 35.010 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CLC _symmetry.space_group_name_H-M 'P 41' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GTPASE HRAS' 18799.096 1 ? YES 'RESIDUES 1-166' 'AN IANBD FLUOROPHORE WAS ATTACHED TO CYS-32' 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 non-polymer syn "N,N'-DIMETHYL-N-(ACETYL)-N'-(7-NITROBENZ-2-OXA-1,3-DIAZOL-4-YL)ETHYLENEDIAMINE" 293.279 1 ? ? ? ? 4 non-polymer syn "GUANOSINE-5'-TRIPHOSPHATE" 523.180 1 ? ? ? ? 5 water nat water 18.015 199 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'H-RAS P21, TRANSFORMING PROTEIN P21, P21RAS, H-RAS-1, C-H-RAS' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV REIRQH ; _entity_poly.pdbx_seq_one_letter_code_can ;MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV REIRQH ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 GLU n 1 4 TYR n 1 5 LYS n 1 6 LEU n 1 7 VAL n 1 8 VAL n 1 9 VAL n 1 10 GLY n 1 11 ALA n 1 12 GLY n 1 13 GLY n 1 14 VAL n 1 15 GLY n 1 16 LYS n 1 17 SER n 1 18 ALA n 1 19 LEU n 1 20 THR n 1 21 ILE n 1 22 GLN n 1 23 LEU n 1 24 ILE n 1 25 GLN n 1 26 ASN n 1 27 HIS n 1 28 PHE n 1 29 VAL n 1 30 ASP n 1 31 GLU n 1 32 CYS n 1 33 ASP n 1 34 PRO n 1 35 THR n 1 36 ILE n 1 37 GLU n 1 38 ASP n 1 39 SER n 1 40 TYR n 1 41 ARG n 1 42 LYS n 1 43 GLN n 1 44 VAL n 1 45 VAL n 1 46 ILE n 1 47 ASP n 1 48 GLY n 1 49 GLU n 1 50 THR n 1 51 CYS n 1 52 LEU n 1 53 LEU n 1 54 ASP n 1 55 ILE n 1 56 LEU n 1 57 ASP n 1 58 THR n 1 59 ALA n 1 60 GLY n 1 61 GLN n 1 62 GLU n 1 63 GLU n 1 64 TYR n 1 65 SER n 1 66 ALA n 1 67 MET n 1 68 ARG n 1 69 ASP n 1 70 GLN n 1 71 TYR n 1 72 MET n 1 73 ARG n 1 74 THR n 1 75 GLY n 1 76 GLU n 1 77 GLY n 1 78 PHE n 1 79 LEU n 1 80 CYS n 1 81 VAL n 1 82 PHE n 1 83 ALA n 1 84 ILE n 1 85 ASN n 1 86 ASN n 1 87 THR n 1 88 LYS n 1 89 SER n 1 90 PHE n 1 91 GLU n 1 92 ASP n 1 93 ILE n 1 94 HIS n 1 95 GLN n 1 96 TYR n 1 97 ARG n 1 98 GLU n 1 99 GLN n 1 100 ILE n 1 101 LYS n 1 102 ARG n 1 103 VAL n 1 104 LYS n 1 105 ASP n 1 106 SER n 1 107 ASP n 1 108 ASP n 1 109 VAL n 1 110 PRO n 1 111 MET n 1 112 VAL n 1 113 LEU n 1 114 VAL n 1 115 GLY n 1 116 ASN n 1 117 LYS n 1 118 SER n 1 119 ASP n 1 120 LEU n 1 121 ALA n 1 122 ALA n 1 123 ARG n 1 124 THR n 1 125 VAL n 1 126 GLU n 1 127 SER n 1 128 ARG n 1 129 GLN n 1 130 ALA n 1 131 GLN n 1 132 ASP n 1 133 LEU n 1 134 ALA n 1 135 ARG n 1 136 SER n 1 137 TYR n 1 138 GLY n 1 139 ILE n 1 140 PRO n 1 141 TYR n 1 142 ILE n 1 143 GLU n 1 144 THR n 1 145 SER n 1 146 ALA n 1 147 LYS n 1 148 THR n 1 149 ARG n 1 150 GLN n 1 151 GLY n 1 152 VAL n 1 153 GLU n 1 154 ASP n 1 155 ALA n 1 156 PHE n 1 157 TYR n 1 158 THR n 1 159 LEU n 1 160 VAL n 1 161 ARG n 1 162 GLU n 1 163 ILE n 1 164 ARG n 1 165 GLN n 1 166 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain CK600K _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PTAC RAS' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RASH_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P01112 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2CLC _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 166 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P01112 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 166 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 166 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2CLC CYS X 32 ? UNP P01112 TYR 32 'engineered mutation' 32 1 1 2CLC SER X 118 ? UNP P01112 CYS 118 'engineered mutation' 118 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 XY2 non-polymer . "N,N'-DIMETHYL-N-(ACETYL)-N'-(7-NITROBENZ-2-OXA-1,3-DIAZOL-4-YL)ETHYLENEDIAMINE" ? 'C12 H15 N5 O4' 293.279 # _exptl.entry_id 2CLC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.2 _exptl_crystal.density_percent_sol 43.8 _exptl_crystal.description ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.20 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;PROTEIN SOLUTION: 13.35 MG/ML PROTEIN, 64 MM TRIS PH 7.6, 20 MM MAGNESIUM CHLORIDE, 10 MM DTT, 0,1 MM SODIUM AZIDE; RESERVOIR SOLUTION: 100 MM HEPES PH 7.2, 200 MM MAGNESIUM ACETATE, 16% PEG 8000 FRESHLY PREPARED) MIXTURE OF EQUAL VOLUMES OF PROTEIN AND RESERVOIR SOLUTION, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K ; # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2004-12-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.976 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 0.976 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2CLC _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 69.340 _reflns.d_resolution_high 1.300 _reflns.number_obs 41195 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.06000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.0500 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.270 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.30 _reflns_shell.d_res_low 1.40 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.55000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.140 _reflns_shell.pdbx_redundancy 5.50 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2CLC _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 39138 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 69.34 _refine.ls_d_res_high 1.30 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.150 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.149 _refine.ls_R_factor_R_free 0.180 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 2055 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.978 _refine.correlation_coeff_Fo_to_Fc_free 0.969 _refine.B_iso_mean 13.86 _refine.aniso_B[1][1] -0.99000 _refine.aniso_B[2][2] -0.99000 _refine.aniso_B[3][3] 1.98000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. AN IANBD FLUOROPHORE WAS ATTACHED TO CYS-32. THE STRUCTURE WAS REFINED USING TWO ALTERNATIVE CONFORMATIONS FOR THE WHOLE PROTEIN CHAIN. THE CLOSE CONTACTS WITH WATER MOLECULES ARE CAUSED BY THE TREATMENT OF THE WHOLE PROTEIN CHAIN WITH TWO ALTERNATIVE CONFORMATIONS, BUT ONLY ONE POSITION PER WATER MOLECULE. ; _refine.pdbx_starting_model 'PDB ENTRY 5P21' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.064 _refine.pdbx_overall_ESU_R_Free 0.065 _refine.overall_SU_ML 0.060 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.301 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1317 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 55 _refine_hist.number_atoms_solvent 199 _refine_hist.number_atoms_total 1571 _refine_hist.d_res_high 1.30 _refine_hist.d_res_low 69.34 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.022 ? 2784 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 2452 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.753 2.008 ? 3778 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.832 3.000 ? 5700 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.807 5.000 ? 330 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.894 24.493 ? 138 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.572 15.000 ? 480 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.682 15.000 ? 22 'X-RAY DIFFRACTION' ? r_chiral_restr 0.092 0.200 ? 414 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 3074 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 542 'X-RAY DIFFRACTION' ? r_nbd_refined 0.228 0.200 ? 157 'X-RAY DIFFRACTION' ? r_nbd_other 0.192 0.200 ? 1206 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.188 0.200 ? 645 'X-RAY DIFFRACTION' ? r_nbtor_other 0.090 0.200 ? 861 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.240 0.200 ? 193 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.375 0.200 ? 15 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.373 0.200 ? 22 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.401 0.200 ? 30 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.237 1.500 ? 2154 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.306 2.000 ? 2658 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.028 3.000 ? 1363 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 2.808 4.500 ? 1120 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.30 _refine_ls_shell.d_res_low 1.33 _refine_ls_shell.number_reflns_R_work 2871 _refine_ls_shell.R_factor_R_work 0.2720 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3090 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 146 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2CLC _struct.title 'CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN COMPLEX WITH GTP (2)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CLC _struct_keywords.pdbx_keywords 'NUCLEOTIDE-BINDING PROTEIN' _struct_keywords.text ;NUCLEOTIDE-BINDING PROTEIN, GOLGI APPARATUS, PROTO-ONCOGENE, R-CAGED GTP, PRENYLATION, LIPOPROTEIN, GTP-BINDING, PALMITATE, METHYLATION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 15 ? ASN A 26 ? GLY X 15 ASN X 26 1 ? 12 HELX_P HELX_P2 2 SER A 65 ? ARG A 73 ? SER X 65 ARG X 73 1 ? 9 HELX_P HELX_P3 3 ASN A 86 ? ASP A 92 ? ASN X 86 ASP X 92 1 ? 7 HELX_P HELX_P4 4 ASP A 92 ? LYS A 104 ? ASP X 92 LYS X 104 1 ? 13 HELX_P HELX_P5 5 GLU A 126 ? GLY A 138 ? GLU X 126 GLY X 138 1 ? 13 HELX_P HELX_P6 6 GLY A 151 ? HIS A 166 ? GLY X 151 HIS X 166 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A CYS 32 SG A ? ? 1_555 D XY2 . C19 A ? X CYS 32 X XY2 332 1_555 ? ? ? ? ? ? ? 1.769 ? ? metalc1 metalc ? ? A SER 17 OG A ? ? 1_555 B MG . MG A ? X SER 17 X MG 168 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc2 metalc ? ? A THR 35 OG1 A ? ? 1_555 B MG . MG A ? X THR 35 X MG 168 1_555 ? ? ? ? ? ? ? 2.025 ? ? metalc3 metalc ? ? B MG . MG A ? ? 1_555 E GTP . O1G A ? X MG 168 X GTP 1167 1_555 ? ? ? ? ? ? ? 2.333 ? ? metalc4 metalc ? ? B MG . MG A ? ? 1_555 E GTP . O1B A ? X MG 168 X GTP 1167 1_555 ? ? ? ? ? ? ? 2.135 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id XA _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense XA 1 2 ? anti-parallel XA 2 3 ? parallel XA 3 4 ? parallel XA 4 5 ? parallel XA 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id XA 1 GLU A 37 ? ILE A 46 ? GLU X 37 ILE X 46 XA 2 GLU A 49 ? THR A 58 ? GLU X 49 THR X 58 XA 3 THR A 2 ? VAL A 9 ? THR X 2 VAL X 9 XA 4 GLY A 77 ? ALA A 83 ? GLY X 77 ALA X 83 XA 5 MET A 111 ? ASN A 116 ? MET X 111 ASN X 116 XA 6 TYR A 141 ? THR A 144 ? TYR X 141 THR X 144 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id XA 1 2 N ILE A 46 ? N ILE X 46 O GLU A 49 ? O GLU X 49 XA 2 3 N LEU A 52 ? N LEU X 52 O THR A 2 ? O THR X 2 XA 3 4 N VAL A 7 ? N VAL X 7 O GLY A 77 ? O GLY X 77 XA 4 5 N CYS A 80 ? N CYS X 80 O VAL A 112 ? O VAL X 112 XA 5 6 N GLY A 115 ? N GLY X 115 O ILE A 142 ? O ILE X 142 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software X MG 168 ? 5 'BINDING SITE FOR RESIDUE MG X 168' AC2 Software X MG 169 ? 6 'BINDING SITE FOR RESIDUE MG X 169' AC3 Software X XY2 332 ? 8 'BINDING SITE FOR RESIDUE XY2 X 332' AC4 Software X GTP 1167 ? 28 'BINDING SITE FOR RESIDUE GTP X 1167' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 SER A 17 ? SER X 17 . ? 1_555 ? 2 AC1 5 THR A 35 ? THR X 35 . ? 1_555 ? 3 AC1 5 GTP E . ? GTP X 1167 . ? 1_555 ? 4 AC1 5 HOH F . ? HOH X 2170 . ? 1_555 ? 5 AC1 5 HOH F . ? HOH X 2176 . ? 1_555 ? 6 AC2 6 ASP A 108 ? ASP X 108 . ? 1_555 ? 7 AC2 6 HIS A 166 ? HIS X 166 . ? 1_555 ? 8 AC2 6 HOH F . ? HOH X 2026 . ? 1_555 ? 9 AC2 6 HOH F . ? HOH X 2119 . ? 1_555 ? 10 AC2 6 HOH F . ? HOH X 2171 . ? 1_555 ? 11 AC2 6 HOH F . ? HOH X 2174 . ? 1_555 ? 12 AC3 8 CYS A 32 ? CYS X 32 . ? 1_555 ? 13 AC3 8 TYR A 64 ? TYR X 64 . ? 3_665 ? 14 AC3 8 ASP A 69 ? ASP X 69 . ? 3_665 ? 15 AC3 8 GLN A 99 ? GLN X 99 . ? 3_665 ? 16 AC3 8 ARG A 102 ? ARG X 102 . ? 3_665 ? 17 AC3 8 VAL A 103 ? VAL X 103 . ? 3_665 ? 18 AC3 8 GLN A 131 ? GLN X 131 . ? 3_664 ? 19 AC3 8 HOH F . ? HOH X 2143 . ? 3_665 ? 20 AC4 28 GLY A 12 ? GLY X 12 . ? 1_555 ? 21 AC4 28 GLY A 13 ? GLY X 13 . ? 1_555 ? 22 AC4 28 VAL A 14 ? VAL X 14 . ? 1_555 ? 23 AC4 28 GLY A 15 ? GLY X 15 . ? 1_555 ? 24 AC4 28 LYS A 16 ? LYS X 16 . ? 1_555 ? 25 AC4 28 SER A 17 ? SER X 17 . ? 1_555 ? 26 AC4 28 ALA A 18 ? ALA X 18 . ? 1_555 ? 27 AC4 28 PHE A 28 ? PHE X 28 . ? 1_555 ? 28 AC4 28 VAL A 29 ? VAL X 29 . ? 1_555 ? 29 AC4 28 ASP A 30 ? ASP X 30 . ? 1_555 ? 30 AC4 28 THR A 35 ? THR X 35 . ? 1_555 ? 31 AC4 28 GLY A 60 ? GLY X 60 . ? 1_555 ? 32 AC4 28 ASN A 116 ? ASN X 116 . ? 1_555 ? 33 AC4 28 LYS A 117 ? LYS X 117 . ? 1_555 ? 34 AC4 28 ASP A 119 ? ASP X 119 . ? 1_555 ? 35 AC4 28 LEU A 120 ? LEU X 120 . ? 1_555 ? 36 AC4 28 SER A 145 ? SER X 145 . ? 1_555 ? 37 AC4 28 ALA A 146 ? ALA X 146 . ? 1_555 ? 38 AC4 28 MG B . ? MG X 168 . ? 1_555 ? 39 AC4 28 HOH F . ? HOH X 2047 . ? 3_665 ? 40 AC4 28 HOH F . ? HOH X 2062 . ? 1_555 ? 41 AC4 28 HOH F . ? HOH X 2103 . ? 1_555 ? 42 AC4 28 HOH F . ? HOH X 2138 . ? 3_665 ? 43 AC4 28 HOH F . ? HOH X 2140 . ? 1_555 ? 44 AC4 28 HOH F . ? HOH X 2170 . ? 1_555 ? 45 AC4 28 HOH F . ? HOH X 2172 . ? 3_665 ? 46 AC4 28 HOH F . ? HOH X 2176 . ? 1_555 ? 47 AC4 28 HOH F . ? HOH X 2179 . ? 1_555 ? # _database_PDB_matrix.entry_id 2CLC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2CLC _atom_sites.fract_transf_matrix[1][1] 0.014426 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014426 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028563 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET X . n A 1 2 THR 2 2 2 THR THR X . n A 1 3 GLU 3 3 3 GLU GLU X . n A 1 4 TYR 4 4 4 TYR TYR X . n A 1 5 LYS 5 5 5 LYS LYS X . n A 1 6 LEU 6 6 6 LEU LEU X . n A 1 7 VAL 7 7 7 VAL VAL X . n A 1 8 VAL 8 8 8 VAL VAL X . n A 1 9 VAL 9 9 9 VAL VAL X . n A 1 10 GLY 10 10 10 GLY GLY X . n A 1 11 ALA 11 11 11 ALA ALA X . n A 1 12 GLY 12 12 12 GLY GLY X . n A 1 13 GLY 13 13 13 GLY GLY X . n A 1 14 VAL 14 14 14 VAL VAL X . n A 1 15 GLY 15 15 15 GLY GLY X . n A 1 16 LYS 16 16 16 LYS LYS X . n A 1 17 SER 17 17 17 SER SER X . n A 1 18 ALA 18 18 18 ALA ALA X . n A 1 19 LEU 19 19 19 LEU LEU X . n A 1 20 THR 20 20 20 THR THR X . n A 1 21 ILE 21 21 21 ILE ILE X . n A 1 22 GLN 22 22 22 GLN GLN X . n A 1 23 LEU 23 23 23 LEU LEU X . n A 1 24 ILE 24 24 24 ILE ILE X . n A 1 25 GLN 25 25 25 GLN GLN X . n A 1 26 ASN 26 26 26 ASN ASN X . n A 1 27 HIS 27 27 27 HIS HIS X . n A 1 28 PHE 28 28 28 PHE PHE X . n A 1 29 VAL 29 29 29 VAL VAL X . n A 1 30 ASP 30 30 30 ASP ASP X . n A 1 31 GLU 31 31 31 GLU GLU X . n A 1 32 CYS 32 32 32 CYS CYS X . n A 1 33 ASP 33 33 33 ASP ASP X . n A 1 34 PRO 34 34 34 PRO PRO X . n A 1 35 THR 35 35 35 THR THR X . n A 1 36 ILE 36 36 36 ILE ILE X . n A 1 37 GLU 37 37 37 GLU GLU X . n A 1 38 ASP 38 38 38 ASP ASP X . n A 1 39 SER 39 39 39 SER SER X . n A 1 40 TYR 40 40 40 TYR TYR X . n A 1 41 ARG 41 41 41 ARG ARG X . n A 1 42 LYS 42 42 42 LYS LYS X . n A 1 43 GLN 43 43 43 GLN GLN X . n A 1 44 VAL 44 44 44 VAL VAL X . n A 1 45 VAL 45 45 45 VAL VAL X . n A 1 46 ILE 46 46 46 ILE ILE X . n A 1 47 ASP 47 47 47 ASP ASP X . n A 1 48 GLY 48 48 48 GLY GLY X . n A 1 49 GLU 49 49 49 GLU GLU X . n A 1 50 THR 50 50 50 THR THR X . n A 1 51 CYS 51 51 51 CYS CYS X . n A 1 52 LEU 52 52 52 LEU LEU X . n A 1 53 LEU 53 53 53 LEU LEU X . n A 1 54 ASP 54 54 54 ASP ASP X . n A 1 55 ILE 55 55 55 ILE ILE X . n A 1 56 LEU 56 56 56 LEU LEU X . n A 1 57 ASP 57 57 57 ASP ASP X . n A 1 58 THR 58 58 58 THR THR X . n A 1 59 ALA 59 59 59 ALA ALA X . n A 1 60 GLY 60 60 60 GLY GLY X . n A 1 61 GLN 61 61 61 GLN GLN X . n A 1 62 GLU 62 62 62 GLU GLU X . n A 1 63 GLU 63 63 63 GLU GLU X . n A 1 64 TYR 64 64 64 TYR TYR X . n A 1 65 SER 65 65 65 SER SER X . n A 1 66 ALA 66 66 66 ALA ALA X . n A 1 67 MET 67 67 67 MET MET X . n A 1 68 ARG 68 68 68 ARG ARG X . n A 1 69 ASP 69 69 69 ASP ASP X . n A 1 70 GLN 70 70 70 GLN GLN X . n A 1 71 TYR 71 71 71 TYR TYR X . n A 1 72 MET 72 72 72 MET MET X . n A 1 73 ARG 73 73 73 ARG ARG X . n A 1 74 THR 74 74 74 THR THR X . n A 1 75 GLY 75 75 75 GLY GLY X . n A 1 76 GLU 76 76 76 GLU GLU X . n A 1 77 GLY 77 77 77 GLY GLY X . n A 1 78 PHE 78 78 78 PHE PHE X . n A 1 79 LEU 79 79 79 LEU LEU X . n A 1 80 CYS 80 80 80 CYS CYS X . n A 1 81 VAL 81 81 81 VAL VAL X . n A 1 82 PHE 82 82 82 PHE PHE X . n A 1 83 ALA 83 83 83 ALA ALA X . n A 1 84 ILE 84 84 84 ILE ILE X . n A 1 85 ASN 85 85 85 ASN ASN X . n A 1 86 ASN 86 86 86 ASN ASN X . n A 1 87 THR 87 87 87 THR THR X . n A 1 88 LYS 88 88 88 LYS LYS X . n A 1 89 SER 89 89 89 SER SER X . n A 1 90 PHE 90 90 90 PHE PHE X . n A 1 91 GLU 91 91 91 GLU GLU X . n A 1 92 ASP 92 92 92 ASP ASP X . n A 1 93 ILE 93 93 93 ILE ILE X . n A 1 94 HIS 94 94 94 HIS HIS X . n A 1 95 GLN 95 95 95 GLN GLN X . n A 1 96 TYR 96 96 96 TYR TYR X . n A 1 97 ARG 97 97 97 ARG ARG X . n A 1 98 GLU 98 98 98 GLU GLU X . n A 1 99 GLN 99 99 99 GLN GLN X . n A 1 100 ILE 100 100 100 ILE ILE X . n A 1 101 LYS 101 101 101 LYS LYS X . n A 1 102 ARG 102 102 102 ARG ARG X . n A 1 103 VAL 103 103 103 VAL VAL X . n A 1 104 LYS 104 104 104 LYS LYS X . n A 1 105 ASP 105 105 105 ASP ASP X . n A 1 106 SER 106 106 106 SER SER X . n A 1 107 ASP 107 107 107 ASP ASP X . n A 1 108 ASP 108 108 108 ASP ASP X . n A 1 109 VAL 109 109 109 VAL VAL X . n A 1 110 PRO 110 110 110 PRO PRO X . n A 1 111 MET 111 111 111 MET MET X . n A 1 112 VAL 112 112 112 VAL VAL X . n A 1 113 LEU 113 113 113 LEU LEU X . n A 1 114 VAL 114 114 114 VAL VAL X . n A 1 115 GLY 115 115 115 GLY GLY X . n A 1 116 ASN 116 116 116 ASN ASN X . n A 1 117 LYS 117 117 117 LYS LYS X . n A 1 118 SER 118 118 118 SER SER X . n A 1 119 ASP 119 119 119 ASP ASP X . n A 1 120 LEU 120 120 120 LEU LEU X . n A 1 121 ALA 121 121 121 ALA ALA X . n A 1 122 ALA 122 122 122 ALA ALA X . n A 1 123 ARG 123 123 123 ARG ARG X . n A 1 124 THR 124 124 124 THR THR X . n A 1 125 VAL 125 125 125 VAL VAL X . n A 1 126 GLU 126 126 126 GLU GLU X . n A 1 127 SER 127 127 127 SER SER X . n A 1 128 ARG 128 128 128 ARG ARG X . n A 1 129 GLN 129 129 129 GLN GLN X . n A 1 130 ALA 130 130 130 ALA ALA X . n A 1 131 GLN 131 131 131 GLN GLN X . n A 1 132 ASP 132 132 132 ASP ASP X . n A 1 133 LEU 133 133 133 LEU LEU X . n A 1 134 ALA 134 134 134 ALA ALA X . n A 1 135 ARG 135 135 135 ARG ARG X . n A 1 136 SER 136 136 136 SER SER X . n A 1 137 TYR 137 137 137 TYR TYR X . n A 1 138 GLY 138 138 138 GLY GLY X . n A 1 139 ILE 139 139 139 ILE ILE X . n A 1 140 PRO 140 140 140 PRO PRO X . n A 1 141 TYR 141 141 141 TYR TYR X . n A 1 142 ILE 142 142 142 ILE ILE X . n A 1 143 GLU 143 143 143 GLU GLU X . n A 1 144 THR 144 144 144 THR THR X . n A 1 145 SER 145 145 145 SER SER X . n A 1 146 ALA 146 146 146 ALA ALA X . n A 1 147 LYS 147 147 147 LYS LYS X . n A 1 148 THR 148 148 148 THR THR X . n A 1 149 ARG 149 149 149 ARG ARG X . n A 1 150 GLN 150 150 150 GLN GLN X . n A 1 151 GLY 151 151 151 GLY GLY X . n A 1 152 VAL 152 152 152 VAL VAL X . n A 1 153 GLU 153 153 153 GLU GLU X . n A 1 154 ASP 154 154 154 ASP ASP X . n A 1 155 ALA 155 155 155 ALA ALA X . n A 1 156 PHE 156 156 156 PHE PHE X . n A 1 157 TYR 157 157 157 TYR TYR X . n A 1 158 THR 158 158 158 THR THR X . n A 1 159 LEU 159 159 159 LEU LEU X . n A 1 160 VAL 160 160 160 VAL VAL X . n A 1 161 ARG 161 161 161 ARG ARG X . n A 1 162 GLU 162 162 162 GLU GLU X . n A 1 163 ILE 163 163 163 ILE ILE X . n A 1 164 ARG 164 164 164 ARG ARG X . n A 1 165 GLN 165 165 165 GLN GLN X . n A 1 166 HIS 166 166 166 HIS HIS X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 168 168 MG MG X . C 2 MG 1 169 169 MG MG X . D 3 XY2 1 332 332 XY2 XY2 X . E 4 GTP 1 1167 1167 GTP GTP X . F 5 HOH 1 2001 2001 HOH HOH X . F 5 HOH 2 2002 2002 HOH HOH X . F 5 HOH 3 2003 2003 HOH HOH X . F 5 HOH 4 2004 2004 HOH HOH X . F 5 HOH 5 2005 2005 HOH HOH X . F 5 HOH 6 2006 2006 HOH HOH X . F 5 HOH 7 2007 2007 HOH HOH X . F 5 HOH 8 2008 2008 HOH HOH X . F 5 HOH 9 2009 2009 HOH HOH X . F 5 HOH 10 2010 2010 HOH HOH X . F 5 HOH 11 2011 2011 HOH HOH X . F 5 HOH 12 2012 2012 HOH HOH X . F 5 HOH 13 2013 2013 HOH HOH X . F 5 HOH 14 2014 2014 HOH HOH X . F 5 HOH 15 2015 2015 HOH HOH X . F 5 HOH 16 2016 2016 HOH HOH X . F 5 HOH 17 2017 2017 HOH HOH X . F 5 HOH 18 2018 2018 HOH HOH X . F 5 HOH 19 2019 2019 HOH HOH X . F 5 HOH 20 2020 2020 HOH HOH X . F 5 HOH 21 2021 2021 HOH HOH X . F 5 HOH 22 2022 2022 HOH HOH X . F 5 HOH 23 2023 2023 HOH HOH X . F 5 HOH 24 2024 2024 HOH HOH X . F 5 HOH 25 2025 2025 HOH HOH X . F 5 HOH 26 2026 2026 HOH HOH X . F 5 HOH 27 2027 2027 HOH HOH X . F 5 HOH 28 2028 2028 HOH HOH X . F 5 HOH 29 2029 2029 HOH HOH X . F 5 HOH 30 2030 2030 HOH HOH X . F 5 HOH 31 2031 2031 HOH HOH X . F 5 HOH 32 2032 2032 HOH HOH X . F 5 HOH 33 2033 2033 HOH HOH X . F 5 HOH 34 2034 2034 HOH HOH X . F 5 HOH 35 2035 2035 HOH HOH X . F 5 HOH 36 2036 2036 HOH HOH X . F 5 HOH 37 2037 2037 HOH HOH X . F 5 HOH 38 2038 2038 HOH HOH X . F 5 HOH 39 2039 2039 HOH HOH X . F 5 HOH 40 2040 2040 HOH HOH X . F 5 HOH 41 2041 2041 HOH HOH X . F 5 HOH 42 2042 2042 HOH HOH X . F 5 HOH 43 2043 2043 HOH HOH X . F 5 HOH 44 2044 2044 HOH HOH X . F 5 HOH 45 2045 2045 HOH HOH X . F 5 HOH 46 2046 2046 HOH HOH X . F 5 HOH 47 2047 2047 HOH HOH X . F 5 HOH 48 2048 2048 HOH HOH X . F 5 HOH 49 2049 2049 HOH HOH X . F 5 HOH 50 2050 2050 HOH HOH X . F 5 HOH 51 2051 2051 HOH HOH X . F 5 HOH 52 2052 2052 HOH HOH X . F 5 HOH 53 2053 2053 HOH HOH X . F 5 HOH 54 2054 2054 HOH HOH X . F 5 HOH 55 2055 2055 HOH HOH X . F 5 HOH 56 2056 2056 HOH HOH X . F 5 HOH 57 2057 2057 HOH HOH X . F 5 HOH 58 2058 2058 HOH HOH X . F 5 HOH 59 2059 2059 HOH HOH X . F 5 HOH 60 2060 2060 HOH HOH X . F 5 HOH 61 2061 2061 HOH HOH X . F 5 HOH 62 2062 2062 HOH HOH X . F 5 HOH 63 2063 2063 HOH HOH X . F 5 HOH 64 2064 2064 HOH HOH X . F 5 HOH 65 2065 2065 HOH HOH X . F 5 HOH 66 2066 2066 HOH HOH X . F 5 HOH 67 2067 2067 HOH HOH X . F 5 HOH 68 2068 2068 HOH HOH X . F 5 HOH 69 2069 2069 HOH HOH X . F 5 HOH 70 2070 2070 HOH HOH X . F 5 HOH 71 2071 2071 HOH HOH X . F 5 HOH 72 2072 2072 HOH HOH X . F 5 HOH 73 2073 2073 HOH HOH X . F 5 HOH 74 2074 2074 HOH HOH X . F 5 HOH 75 2075 2075 HOH HOH X . F 5 HOH 76 2076 2076 HOH HOH X . F 5 HOH 77 2077 2077 HOH HOH X . F 5 HOH 78 2078 2078 HOH HOH X . F 5 HOH 79 2079 2079 HOH HOH X . F 5 HOH 80 2080 2080 HOH HOH X . F 5 HOH 81 2081 2081 HOH HOH X . F 5 HOH 82 2082 2082 HOH HOH X . F 5 HOH 83 2083 2083 HOH HOH X . F 5 HOH 84 2084 2084 HOH HOH X . F 5 HOH 85 2085 2085 HOH HOH X . F 5 HOH 86 2086 2086 HOH HOH X . F 5 HOH 87 2087 2087 HOH HOH X . F 5 HOH 88 2088 2088 HOH HOH X . F 5 HOH 89 2089 2089 HOH HOH X . F 5 HOH 90 2090 2090 HOH HOH X . F 5 HOH 91 2091 2091 HOH HOH X . F 5 HOH 92 2092 2092 HOH HOH X . F 5 HOH 93 2093 2093 HOH HOH X . F 5 HOH 94 2094 2094 HOH HOH X . F 5 HOH 95 2095 2095 HOH HOH X . F 5 HOH 96 2096 2096 HOH HOH X . F 5 HOH 97 2097 2097 HOH HOH X . F 5 HOH 98 2098 2098 HOH HOH X . F 5 HOH 99 2099 2099 HOH HOH X . F 5 HOH 100 2100 2100 HOH HOH X . F 5 HOH 101 2101 2101 HOH HOH X . F 5 HOH 102 2102 2102 HOH HOH X . F 5 HOH 103 2103 2103 HOH HOH X . F 5 HOH 104 2104 2104 HOH HOH X . F 5 HOH 105 2105 2105 HOH HOH X . F 5 HOH 106 2106 2106 HOH HOH X . F 5 HOH 107 2107 2107 HOH HOH X . F 5 HOH 108 2108 2108 HOH HOH X . F 5 HOH 109 2109 2109 HOH HOH X . F 5 HOH 110 2110 2110 HOH HOH X . F 5 HOH 111 2111 2111 HOH HOH X . F 5 HOH 112 2112 2112 HOH HOH X . F 5 HOH 113 2113 2113 HOH HOH X . F 5 HOH 114 2114 2114 HOH HOH X . F 5 HOH 115 2115 2115 HOH HOH X . F 5 HOH 116 2116 2116 HOH HOH X . F 5 HOH 117 2117 2117 HOH HOH X . F 5 HOH 118 2118 2118 HOH HOH X . F 5 HOH 119 2119 2119 HOH HOH X . F 5 HOH 120 2120 2120 HOH HOH X . F 5 HOH 121 2121 2121 HOH HOH X . F 5 HOH 122 2122 2122 HOH HOH X . F 5 HOH 123 2123 2123 HOH HOH X . F 5 HOH 124 2124 2124 HOH HOH X . F 5 HOH 125 2125 2125 HOH HOH X . F 5 HOH 126 2126 2126 HOH HOH X . F 5 HOH 127 2127 2127 HOH HOH X . F 5 HOH 128 2128 2128 HOH HOH X . F 5 HOH 129 2129 2129 HOH HOH X . F 5 HOH 130 2130 2130 HOH HOH X . F 5 HOH 131 2131 2131 HOH HOH X . F 5 HOH 132 2132 2132 HOH HOH X . F 5 HOH 133 2133 2133 HOH HOH X . F 5 HOH 134 2134 2134 HOH HOH X . F 5 HOH 135 2135 2135 HOH HOH X . F 5 HOH 136 2136 2136 HOH HOH X . F 5 HOH 137 2137 2137 HOH HOH X . F 5 HOH 138 2138 2138 HOH HOH X . F 5 HOH 139 2139 2139 HOH HOH X . F 5 HOH 140 2140 2140 HOH HOH X . F 5 HOH 141 2141 2141 HOH HOH X . F 5 HOH 142 2142 2142 HOH HOH X . F 5 HOH 143 2143 2143 HOH HOH X . F 5 HOH 144 2144 2144 HOH HOH X . F 5 HOH 145 2145 2145 HOH HOH X . F 5 HOH 146 2146 2146 HOH HOH X . F 5 HOH 147 2147 2147 HOH HOH X . F 5 HOH 148 2148 2148 HOH HOH X . F 5 HOH 149 2149 2149 HOH HOH X . F 5 HOH 150 2150 2150 HOH HOH X . F 5 HOH 151 2151 2151 HOH HOH X . F 5 HOH 152 2152 2152 HOH HOH X . F 5 HOH 153 2153 2153 HOH HOH X . F 5 HOH 154 2154 2154 HOH HOH X . F 5 HOH 155 2155 2155 HOH HOH X . F 5 HOH 156 2156 2156 HOH HOH X . F 5 HOH 157 2157 2157 HOH HOH X . F 5 HOH 158 2158 2158 HOH HOH X . F 5 HOH 159 2159 2159 HOH HOH X . F 5 HOH 160 2160 2160 HOH HOH X . F 5 HOH 161 2161 2161 HOH HOH X . F 5 HOH 162 2162 2162 HOH HOH X . F 5 HOH 163 2163 2163 HOH HOH X . F 5 HOH 164 2164 2164 HOH HOH X . F 5 HOH 165 2165 2165 HOH HOH X . F 5 HOH 166 2166 2166 HOH HOH X . F 5 HOH 167 2167 2167 HOH HOH X . F 5 HOH 168 2168 2168 HOH HOH X . F 5 HOH 169 2169 2169 HOH HOH X . F 5 HOH 170 2170 2170 HOH HOH X . F 5 HOH 171 2171 2171 HOH HOH X . F 5 HOH 172 2172 2172 HOH HOH X . F 5 HOH 173 2173 2173 HOH HOH X . F 5 HOH 174 2174 2174 HOH HOH X . F 5 HOH 175 2175 2175 HOH HOH X . F 5 HOH 176 2176 2176 HOH HOH X . F 5 HOH 177 2177 2177 HOH HOH X . F 5 HOH 178 2178 2178 HOH HOH X . F 5 HOH 179 2179 2179 HOH HOH X . F 5 HOH 180 2180 2180 HOH HOH X . F 5 HOH 181 2181 2181 HOH HOH X . F 5 HOH 182 2182 2182 HOH HOH X . F 5 HOH 183 2183 2183 HOH HOH X . F 5 HOH 184 2184 2184 HOH HOH X . F 5 HOH 185 2185 2185 HOH HOH X . F 5 HOH 186 2186 2186 HOH HOH X . F 5 HOH 187 2187 2187 HOH HOH X . F 5 HOH 188 2188 2188 HOH HOH X . F 5 HOH 189 2189 2189 HOH HOH X . F 5 HOH 190 2190 2190 HOH HOH X . F 5 HOH 191 2191 2191 HOH HOH X . F 5 HOH 192 2192 2192 HOH HOH X . F 5 HOH 193 2193 2193 HOH HOH X . F 5 HOH 194 2194 2194 HOH HOH X . F 5 HOH 195 2195 2195 HOH HOH X . F 5 HOH 196 2196 2196 HOH HOH X . F 5 HOH 197 2197 2197 HOH HOH X . F 5 HOH 198 2198 2198 HOH HOH X . F 5 HOH 199 2199 2199 HOH HOH X . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG A A SER 17 ? X SER 17 ? 1_555 MG A B MG . ? X MG 168 ? 1_555 OG1 A A THR 35 ? X THR 35 ? 1_555 94.1 ? 2 OG A A SER 17 ? X SER 17 ? 1_555 MG A B MG . ? X MG 168 ? 1_555 O1G A E GTP . ? X GTP 1167 ? 1_555 167.7 ? 3 OG1 A A THR 35 ? X THR 35 ? 1_555 MG A B MG . ? X MG 168 ? 1_555 O1G A E GTP . ? X GTP 1167 ? 1_555 88.6 ? 4 OG A A SER 17 ? X SER 17 ? 1_555 MG A B MG . ? X MG 168 ? 1_555 O1B A E GTP . ? X GTP 1167 ? 1_555 99.4 ? 5 OG1 A A THR 35 ? X THR 35 ? 1_555 MG A B MG . ? X MG 168 ? 1_555 O1B A E GTP . ? X GTP 1167 ? 1_555 166.3 ? 6 O1G A E GTP . ? X GTP 1167 ? 1_555 MG A B MG . ? X MG 168 ? 1_555 O1B A E GTP . ? X GTP 1167 ? 1_555 78.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-05-24 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2015-04-22 4 'Structure model' 1 3 2019-01-30 5 'Structure model' 1 4 2019-02-06 6 'Structure model' 1 5 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' Other 7 3 'Structure model' 'Refinement description' 8 4 'Structure model' 'Data collection' 9 4 'Structure model' 'Experimental preparation' 10 4 'Structure model' Other 11 5 'Structure model' 'Data collection' 12 5 'Structure model' 'Experimental preparation' 13 6 'Structure model' 'Data collection' 14 6 'Structure model' 'Database references' 15 6 'Structure model' 'Derived calculations' 16 6 'Structure model' Other 17 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 4 'Structure model' pdbx_database_proc 3 4 'Structure model' pdbx_database_status 4 5 'Structure model' exptl_crystal_grow 5 6 'Structure model' chem_comp_atom 6 6 'Structure model' chem_comp_bond 7 6 'Structure model' database_2 8 6 'Structure model' pdbx_database_status 9 6 'Structure model' pdbx_initial_refinement_model 10 6 'Structure model' pdbx_struct_conn_angle 11 6 'Structure model' struct_conn 12 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.method' 2 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 5 'Structure model' '_exptl_crystal_grow.temp' 4 6 'Structure model' '_database_2.pdbx_DOI' 5 6 'Structure model' '_database_2.pdbx_database_accession' 6 6 'Structure model' '_pdbx_database_status.status_code_sf' 7 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 8 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 9 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 10 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 11 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 12 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 13 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 14 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 17 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 18 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 19 6 'Structure model' '_pdbx_struct_conn_angle.value' 20 6 'Structure model' '_struct_conn.pdbx_dist_value' 21 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' 34 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 35 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 36 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 19.0770 55.4100 -2.2640 -0.0603 -0.0625 -0.1319 -0.0003 -0.0211 0.0191 2.2879 2.2293 0.8577 -0.9779 -0.4125 0.2065 0.0557 0.1441 0.1094 -0.1510 -0.0218 -0.1128 -0.0259 -0.0182 -0.0339 'X-RAY DIFFRACTION' 2 ? refined 22.1380 67.4790 -0.7610 -0.0739 -0.0761 0.0762 0.0142 -0.0166 0.0156 2.0927 4.2510 17.1872 2.6013 0.9802 1.5085 0.0067 0.1611 0.4985 -0.2216 0.3069 -0.3956 -0.4673 0.2758 -0.3135 'X-RAY DIFFRACTION' 3 ? refined 19.6260 54.2520 0.9570 0.1136 0.0875 0.0226 -0.0215 -0.0389 0.0165 3.2986 3.1585 1.2443 -1.2026 -0.3022 0.6195 -0.0172 -0.0428 -0.0235 0.0400 0.0800 -0.1231 0.0466 0.0342 -0.0628 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 X 1 ? ? X 169 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 X 1167 ? ? X 1167 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 X 2001 ? ? X 2321 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.2.0005 ? 1 ? ? ? ? XDS 'data reduction' . ? 2 ? ? ? ? XSCALE 'data scaling' . ? 3 ? ? ? ? MOLREP phasing . ? 4 ? ? ? ? # _pdbx_entry_details.entry_id 2CLC _pdbx_entry_details.compound_details ;RAS PROTEINS BIND GDP/GTP AND POSSESS INTRINSIC GTPASE ACTIVITY ENGINEERED RESIDUE IN CHAIN X, TYR 32 TO CYS ENGINEERED RESIDUE IN CHAIN X, CYS 118 TO SER ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB X CYS 51 ? A SG X CYS 51 ? A 1.930 1.818 0.112 0.017 N 2 1 CD X GLN 70 ? A OE1 X GLN 70 ? A 1.406 1.235 0.171 0.022 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO X 34 ? A -65.23 84.12 2 1 THR X 35 ? A -43.05 153.93 3 1 ILE X 36 ? A -109.17 -79.04 4 1 LYS X 117 ? A 77.32 36.99 5 1 ARG X 149 ? A 79.50 -9.03 6 2 GLU X 37 ? B -178.47 118.11 7 2 GLN X 61 ? B 133.23 115.64 8 2 ASP X 107 ? B -72.46 -168.16 9 2 LYS X 117 ? B 73.95 35.98 10 2 VAL X 152 ? B -56.07 -77.03 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 2 _pdbx_validate_peptide_omega.auth_comp_id_1 SER _pdbx_validate_peptide_omega.auth_asym_id_1 X _pdbx_validate_peptide_omega.auth_seq_id_1 106 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 B _pdbx_validate_peptide_omega.auth_comp_id_2 ASP _pdbx_validate_peptide_omega.auth_asym_id_2 X _pdbx_validate_peptide_omega.auth_seq_id_2 107 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 B _pdbx_validate_peptide_omega.omega 147.75 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O A X HOH 2129 ? 5.85 . 2 1 O A X HOH 2190 ? 7.55 . 3 2 O B X HOH 2133 ? 5.84 . 4 2 O B X HOH 2190 ? 9.78 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GTP PG P N N 137 GTP O1G O N N 138 GTP O2G O N N 139 GTP O3G O N N 140 GTP O3B O N N 141 GTP PB P N N 142 GTP O1B O N N 143 GTP O2B O N N 144 GTP O3A O N N 145 GTP PA P N N 146 GTP O1A O N N 147 GTP O2A O N N 148 GTP "O5'" O N N 149 GTP "C5'" C N N 150 GTP "C4'" C N R 151 GTP "O4'" O N N 152 GTP "C3'" C N S 153 GTP "O3'" O N N 154 GTP "C2'" C N R 155 GTP "O2'" O N N 156 GTP "C1'" C N R 157 GTP N9 N Y N 158 GTP C8 C Y N 159 GTP N7 N Y N 160 GTP C5 C Y N 161 GTP C6 C N N 162 GTP O6 O N N 163 GTP N1 N N N 164 GTP C2 C N N 165 GTP N2 N N N 166 GTP N3 N N N 167 GTP C4 C Y N 168 GTP HOG2 H N N 169 GTP HOG3 H N N 170 GTP HOB2 H N N 171 GTP HOA2 H N N 172 GTP "H5'" H N N 173 GTP "H5''" H N N 174 GTP "H4'" H N N 175 GTP "H3'" H N N 176 GTP "HO3'" H N N 177 GTP "H2'" H N N 178 GTP "HO2'" H N N 179 GTP "H1'" H N N 180 GTP H8 H N N 181 GTP HN1 H N N 182 GTP HN21 H N N 183 GTP HN22 H N N 184 HIS N N N N 185 HIS CA C N S 186 HIS C C N N 187 HIS O O N N 188 HIS CB C N N 189 HIS CG C Y N 190 HIS ND1 N Y N 191 HIS CD2 C Y N 192 HIS CE1 C Y N 193 HIS NE2 N Y N 194 HIS OXT O N N 195 HIS H H N N 196 HIS H2 H N N 197 HIS HA H N N 198 HIS HB2 H N N 199 HIS HB3 H N N 200 HIS HD1 H N N 201 HIS HD2 H N N 202 HIS HE1 H N N 203 HIS HE2 H N N 204 HIS HXT H N N 205 HOH O O N N 206 HOH H1 H N N 207 HOH H2 H N N 208 ILE N N N N 209 ILE CA C N S 210 ILE C C N N 211 ILE O O N N 212 ILE CB C N S 213 ILE CG1 C N N 214 ILE CG2 C N N 215 ILE CD1 C N N 216 ILE OXT O N N 217 ILE H H N N 218 ILE H2 H N N 219 ILE HA H N N 220 ILE HB H N N 221 ILE HG12 H N N 222 ILE HG13 H N N 223 ILE HG21 H N N 224 ILE HG22 H N N 225 ILE HG23 H N N 226 ILE HD11 H N N 227 ILE HD12 H N N 228 ILE HD13 H N N 229 ILE HXT H N N 230 LEU N N N N 231 LEU CA C N S 232 LEU C C N N 233 LEU O O N N 234 LEU CB C N N 235 LEU CG C N N 236 LEU CD1 C N N 237 LEU CD2 C N N 238 LEU OXT O N N 239 LEU H H N N 240 LEU H2 H N N 241 LEU HA H N N 242 LEU HB2 H N N 243 LEU HB3 H N N 244 LEU HG H N N 245 LEU HD11 H N N 246 LEU HD12 H N N 247 LEU HD13 H N N 248 LEU HD21 H N N 249 LEU HD22 H N N 250 LEU HD23 H N N 251 LEU HXT H N N 252 LYS N N N N 253 LYS CA C N S 254 LYS C C N N 255 LYS O O N N 256 LYS CB C N N 257 LYS CG C N N 258 LYS CD C N N 259 LYS CE C N N 260 LYS NZ N N N 261 LYS OXT O N N 262 LYS H H N N 263 LYS H2 H N N 264 LYS HA H N N 265 LYS HB2 H N N 266 LYS HB3 H N N 267 LYS HG2 H N N 268 LYS HG3 H N N 269 LYS HD2 H N N 270 LYS HD3 H N N 271 LYS HE2 H N N 272 LYS HE3 H N N 273 LYS HZ1 H N N 274 LYS HZ2 H N N 275 LYS HZ3 H N N 276 LYS HXT H N N 277 MET N N N N 278 MET CA C N S 279 MET C C N N 280 MET O O N N 281 MET CB C N N 282 MET CG C N N 283 MET SD S N N 284 MET CE C N N 285 MET OXT O N N 286 MET H H N N 287 MET H2 H N N 288 MET HA H N N 289 MET HB2 H N N 290 MET HB3 H N N 291 MET HG2 H N N 292 MET HG3 H N N 293 MET HE1 H N N 294 MET HE2 H N N 295 MET HE3 H N N 296 MET HXT H N N 297 MG MG MG N N 298 PHE N N N N 299 PHE CA C N S 300 PHE C C N N 301 PHE O O N N 302 PHE CB C N N 303 PHE CG C Y N 304 PHE CD1 C Y N 305 PHE CD2 C Y N 306 PHE CE1 C Y N 307 PHE CE2 C Y N 308 PHE CZ C Y N 309 PHE OXT O N N 310 PHE H H N N 311 PHE H2 H N N 312 PHE HA H N N 313 PHE HB2 H N N 314 PHE HB3 H N N 315 PHE HD1 H N N 316 PHE HD2 H N N 317 PHE HE1 H N N 318 PHE HE2 H N N 319 PHE HZ H N N 320 PHE HXT H N N 321 PRO N N N N 322 PRO CA C N S 323 PRO C C N N 324 PRO O O N N 325 PRO CB C N N 326 PRO CG C N N 327 PRO CD C N N 328 PRO OXT O N N 329 PRO H H N N 330 PRO HA H N N 331 PRO HB2 H N N 332 PRO HB3 H N N 333 PRO HG2 H N N 334 PRO HG3 H N N 335 PRO HD2 H N N 336 PRO HD3 H N N 337 PRO HXT H N N 338 SER N N N N 339 SER CA C N S 340 SER C C N N 341 SER O O N N 342 SER CB C N N 343 SER OG O N N 344 SER OXT O N N 345 SER H H N N 346 SER H2 H N N 347 SER HA H N N 348 SER HB2 H N N 349 SER HB3 H N N 350 SER HG H N N 351 SER HXT H N N 352 THR N N N N 353 THR CA C N S 354 THR C C N N 355 THR O O N N 356 THR CB C N R 357 THR OG1 O N N 358 THR CG2 C N N 359 THR OXT O N N 360 THR H H N N 361 THR H2 H N N 362 THR HA H N N 363 THR HB H N N 364 THR HG1 H N N 365 THR HG21 H N N 366 THR HG22 H N N 367 THR HG23 H N N 368 THR HXT H N N 369 TYR N N N N 370 TYR CA C N S 371 TYR C C N N 372 TYR O O N N 373 TYR CB C N N 374 TYR CG C Y N 375 TYR CD1 C Y N 376 TYR CD2 C Y N 377 TYR CE1 C Y N 378 TYR CE2 C Y N 379 TYR CZ C Y N 380 TYR OH O N N 381 TYR OXT O N N 382 TYR H H N N 383 TYR H2 H N N 384 TYR HA H N N 385 TYR HB2 H N N 386 TYR HB3 H N N 387 TYR HD1 H N N 388 TYR HD2 H N N 389 TYR HE1 H N N 390 TYR HE2 H N N 391 TYR HH H N N 392 TYR HXT H N N 393 VAL N N N N 394 VAL CA C N S 395 VAL C C N N 396 VAL O O N N 397 VAL CB C N N 398 VAL CG1 C N N 399 VAL CG2 C N N 400 VAL OXT O N N 401 VAL H H N N 402 VAL H2 H N N 403 VAL HA H N N 404 VAL HB H N N 405 VAL HG11 H N N 406 VAL HG12 H N N 407 VAL HG13 H N N 408 VAL HG21 H N N 409 VAL HG22 H N N 410 VAL HG23 H N N 411 VAL HXT H N N 412 XY2 C1 C Y N 413 XY2 C2 C Y N 414 XY2 C3 C Y N 415 XY2 C19 C N N 416 XY2 C17 C N N 417 XY2 O18 O N N 418 XY2 N15 N N N 419 XY2 C16 C N N 420 XY2 C14 C N N 421 XY2 C13 C N N 422 XY2 N11 N N N 423 XY2 C12 C N N 424 XY2 N5 N Y N 425 XY2 O6 O Y N 426 XY2 N7 N Y N 427 XY2 N8 N N N 428 XY2 O10 O N N 429 XY2 O9 O N N 430 XY2 C21 C Y N 431 XY2 C20 C Y N 432 XY2 C4 C Y N 433 XY2 H191 H N N 434 XY2 H192 H N N 435 XY2 H193 H N N 436 XY2 H161 H N N 437 XY2 H162 H N N 438 XY2 H163 H N N 439 XY2 H141 H N N 440 XY2 H142 H N N 441 XY2 H131 H N N 442 XY2 H132 H N N 443 XY2 H121 H N N 444 XY2 H122 H N N 445 XY2 H123 H N N 446 XY2 H21 H N N 447 XY2 H20 H N N 448 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GTP PG O1G doub N N 129 GTP PG O2G sing N N 130 GTP PG O3G sing N N 131 GTP PG O3B sing N N 132 GTP O2G HOG2 sing N N 133 GTP O3G HOG3 sing N N 134 GTP O3B PB sing N N 135 GTP PB O1B doub N N 136 GTP PB O2B sing N N 137 GTP PB O3A sing N N 138 GTP O2B HOB2 sing N N 139 GTP O3A PA sing N N 140 GTP PA O1A doub N N 141 GTP PA O2A sing N N 142 GTP PA "O5'" sing N N 143 GTP O2A HOA2 sing N N 144 GTP "O5'" "C5'" sing N N 145 GTP "C5'" "C4'" sing N N 146 GTP "C5'" "H5'" sing N N 147 GTP "C5'" "H5''" sing N N 148 GTP "C4'" "O4'" sing N N 149 GTP "C4'" "C3'" sing N N 150 GTP "C4'" "H4'" sing N N 151 GTP "O4'" "C1'" sing N N 152 GTP "C3'" "O3'" sing N N 153 GTP "C3'" "C2'" sing N N 154 GTP "C3'" "H3'" sing N N 155 GTP "O3'" "HO3'" sing N N 156 GTP "C2'" "O2'" sing N N 157 GTP "C2'" "C1'" sing N N 158 GTP "C2'" "H2'" sing N N 159 GTP "O2'" "HO2'" sing N N 160 GTP "C1'" N9 sing N N 161 GTP "C1'" "H1'" sing N N 162 GTP N9 C8 sing Y N 163 GTP N9 C4 sing Y N 164 GTP C8 N7 doub Y N 165 GTP C8 H8 sing N N 166 GTP N7 C5 sing Y N 167 GTP C5 C6 sing N N 168 GTP C5 C4 doub Y N 169 GTP C6 O6 doub N N 170 GTP C6 N1 sing N N 171 GTP N1 C2 sing N N 172 GTP N1 HN1 sing N N 173 GTP C2 N2 sing N N 174 GTP C2 N3 doub N N 175 GTP N2 HN21 sing N N 176 GTP N2 HN22 sing N N 177 GTP N3 C4 sing N N 178 HIS N CA sing N N 179 HIS N H sing N N 180 HIS N H2 sing N N 181 HIS CA C sing N N 182 HIS CA CB sing N N 183 HIS CA HA sing N N 184 HIS C O doub N N 185 HIS C OXT sing N N 186 HIS CB CG sing N N 187 HIS CB HB2 sing N N 188 HIS CB HB3 sing N N 189 HIS CG ND1 sing Y N 190 HIS CG CD2 doub Y N 191 HIS ND1 CE1 doub Y N 192 HIS ND1 HD1 sing N N 193 HIS CD2 NE2 sing Y N 194 HIS CD2 HD2 sing N N 195 HIS CE1 NE2 sing Y N 196 HIS CE1 HE1 sing N N 197 HIS NE2 HE2 sing N N 198 HIS OXT HXT sing N N 199 HOH O H1 sing N N 200 HOH O H2 sing N N 201 ILE N CA sing N N 202 ILE N H sing N N 203 ILE N H2 sing N N 204 ILE CA C sing N N 205 ILE CA CB sing N N 206 ILE CA HA sing N N 207 ILE C O doub N N 208 ILE C OXT sing N N 209 ILE CB CG1 sing N N 210 ILE CB CG2 sing N N 211 ILE CB HB sing N N 212 ILE CG1 CD1 sing N N 213 ILE CG1 HG12 sing N N 214 ILE CG1 HG13 sing N N 215 ILE CG2 HG21 sing N N 216 ILE CG2 HG22 sing N N 217 ILE CG2 HG23 sing N N 218 ILE CD1 HD11 sing N N 219 ILE CD1 HD12 sing N N 220 ILE CD1 HD13 sing N N 221 ILE OXT HXT sing N N 222 LEU N CA sing N N 223 LEU N H sing N N 224 LEU N H2 sing N N 225 LEU CA C sing N N 226 LEU CA CB sing N N 227 LEU CA HA sing N N 228 LEU C O doub N N 229 LEU C OXT sing N N 230 LEU CB CG sing N N 231 LEU CB HB2 sing N N 232 LEU CB HB3 sing N N 233 LEU CG CD1 sing N N 234 LEU CG CD2 sing N N 235 LEU CG HG sing N N 236 LEU CD1 HD11 sing N N 237 LEU CD1 HD12 sing N N 238 LEU CD1 HD13 sing N N 239 LEU CD2 HD21 sing N N 240 LEU CD2 HD22 sing N N 241 LEU CD2 HD23 sing N N 242 LEU OXT HXT sing N N 243 LYS N CA sing N N 244 LYS N H sing N N 245 LYS N H2 sing N N 246 LYS CA C sing N N 247 LYS CA CB sing N N 248 LYS CA HA sing N N 249 LYS C O doub N N 250 LYS C OXT sing N N 251 LYS CB CG sing N N 252 LYS CB HB2 sing N N 253 LYS CB HB3 sing N N 254 LYS CG CD sing N N 255 LYS CG HG2 sing N N 256 LYS CG HG3 sing N N 257 LYS CD CE sing N N 258 LYS CD HD2 sing N N 259 LYS CD HD3 sing N N 260 LYS CE NZ sing N N 261 LYS CE HE2 sing N N 262 LYS CE HE3 sing N N 263 LYS NZ HZ1 sing N N 264 LYS NZ HZ2 sing N N 265 LYS NZ HZ3 sing N N 266 LYS OXT HXT sing N N 267 MET N CA sing N N 268 MET N H sing N N 269 MET N H2 sing N N 270 MET CA C sing N N 271 MET CA CB sing N N 272 MET CA HA sing N N 273 MET C O doub N N 274 MET C OXT sing N N 275 MET CB CG sing N N 276 MET CB HB2 sing N N 277 MET CB HB3 sing N N 278 MET CG SD sing N N 279 MET CG HG2 sing N N 280 MET CG HG3 sing N N 281 MET SD CE sing N N 282 MET CE HE1 sing N N 283 MET CE HE2 sing N N 284 MET CE HE3 sing N N 285 MET OXT HXT sing N N 286 PHE N CA sing N N 287 PHE N H sing N N 288 PHE N H2 sing N N 289 PHE CA C sing N N 290 PHE CA CB sing N N 291 PHE CA HA sing N N 292 PHE C O doub N N 293 PHE C OXT sing N N 294 PHE CB CG sing N N 295 PHE CB HB2 sing N N 296 PHE CB HB3 sing N N 297 PHE CG CD1 doub Y N 298 PHE CG CD2 sing Y N 299 PHE CD1 CE1 sing Y N 300 PHE CD1 HD1 sing N N 301 PHE CD2 CE2 doub Y N 302 PHE CD2 HD2 sing N N 303 PHE CE1 CZ doub Y N 304 PHE CE1 HE1 sing N N 305 PHE CE2 CZ sing Y N 306 PHE CE2 HE2 sing N N 307 PHE CZ HZ sing N N 308 PHE OXT HXT sing N N 309 PRO N CA sing N N 310 PRO N CD sing N N 311 PRO N H sing N N 312 PRO CA C sing N N 313 PRO CA CB sing N N 314 PRO CA HA sing N N 315 PRO C O doub N N 316 PRO C OXT sing N N 317 PRO CB CG sing N N 318 PRO CB HB2 sing N N 319 PRO CB HB3 sing N N 320 PRO CG CD sing N N 321 PRO CG HG2 sing N N 322 PRO CG HG3 sing N N 323 PRO CD HD2 sing N N 324 PRO CD HD3 sing N N 325 PRO OXT HXT sing N N 326 SER N CA sing N N 327 SER N H sing N N 328 SER N H2 sing N N 329 SER CA C sing N N 330 SER CA CB sing N N 331 SER CA HA sing N N 332 SER C O doub N N 333 SER C OXT sing N N 334 SER CB OG sing N N 335 SER CB HB2 sing N N 336 SER CB HB3 sing N N 337 SER OG HG sing N N 338 SER OXT HXT sing N N 339 THR N CA sing N N 340 THR N H sing N N 341 THR N H2 sing N N 342 THR CA C sing N N 343 THR CA CB sing N N 344 THR CA HA sing N N 345 THR C O doub N N 346 THR C OXT sing N N 347 THR CB OG1 sing N N 348 THR CB CG2 sing N N 349 THR CB HB sing N N 350 THR OG1 HG1 sing N N 351 THR CG2 HG21 sing N N 352 THR CG2 HG22 sing N N 353 THR CG2 HG23 sing N N 354 THR OXT HXT sing N N 355 TYR N CA sing N N 356 TYR N H sing N N 357 TYR N H2 sing N N 358 TYR CA C sing N N 359 TYR CA CB sing N N 360 TYR CA HA sing N N 361 TYR C O doub N N 362 TYR C OXT sing N N 363 TYR CB CG sing N N 364 TYR CB HB2 sing N N 365 TYR CB HB3 sing N N 366 TYR CG CD1 doub Y N 367 TYR CG CD2 sing Y N 368 TYR CD1 CE1 sing Y N 369 TYR CD1 HD1 sing N N 370 TYR CD2 CE2 doub Y N 371 TYR CD2 HD2 sing N N 372 TYR CE1 CZ doub Y N 373 TYR CE1 HE1 sing N N 374 TYR CE2 CZ sing Y N 375 TYR CE2 HE2 sing N N 376 TYR CZ OH sing N N 377 TYR OH HH sing N N 378 TYR OXT HXT sing N N 379 VAL N CA sing N N 380 VAL N H sing N N 381 VAL N H2 sing N N 382 VAL CA C sing N N 383 VAL CA CB sing N N 384 VAL CA HA sing N N 385 VAL C O doub N N 386 VAL C OXT sing N N 387 VAL CB CG1 sing N N 388 VAL CB CG2 sing N N 389 VAL CB HB sing N N 390 VAL CG1 HG11 sing N N 391 VAL CG1 HG12 sing N N 392 VAL CG1 HG13 sing N N 393 VAL CG2 HG21 sing N N 394 VAL CG2 HG22 sing N N 395 VAL CG2 HG23 sing N N 396 VAL OXT HXT sing N N 397 XY2 C1 C2 sing Y N 398 XY2 C1 N8 sing N N 399 XY2 C1 C21 doub Y N 400 XY2 C2 C3 sing Y N 401 XY2 C2 N5 doub Y N 402 XY2 C3 N7 doub Y N 403 XY2 C3 C4 sing Y N 404 XY2 C19 C17 sing N N 405 XY2 C19 H191 sing N N 406 XY2 C19 H192 sing N N 407 XY2 C19 H193 sing N N 408 XY2 C17 O18 doub N N 409 XY2 C17 N15 sing N N 410 XY2 N15 C16 sing N N 411 XY2 N15 C14 sing N N 412 XY2 C16 H161 sing N N 413 XY2 C16 H162 sing N N 414 XY2 C16 H163 sing N N 415 XY2 C14 C13 sing N N 416 XY2 C14 H141 sing N N 417 XY2 C14 H142 sing N N 418 XY2 C13 N11 sing N N 419 XY2 C13 H131 sing N N 420 XY2 C13 H132 sing N N 421 XY2 N11 C12 sing N N 422 XY2 N11 C4 sing N N 423 XY2 C12 H121 sing N N 424 XY2 C12 H122 sing N N 425 XY2 C12 H123 sing N N 426 XY2 N5 O6 sing Y N 427 XY2 O6 N7 sing Y N 428 XY2 N8 O10 sing N N 429 XY2 N8 O9 doub N N 430 XY2 C21 C20 sing Y N 431 XY2 C21 H21 sing N N 432 XY2 C20 C4 doub Y N 433 XY2 C20 H20 sing N N 434 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "N,N'-DIMETHYL-N-(ACETYL)-N'-(7-NITROBENZ-2-OXA-1,3-DIAZOL-4-YL)ETHYLENEDIAMINE" XY2 4 "GUANOSINE-5'-TRIPHOSPHATE" GTP 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5P21 _pdbx_initial_refinement_model.details 'PDB ENTRY 5P21' #