data_2CM5 # _entry.id 2CM5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2CM5 pdb_00002cm5 10.2210/pdb2cm5/pdb PDBE EBI-28531 ? ? WWPDB D_1290028531 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-12-04 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-10-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_entry_details 6 4 'Structure model' pdbx_modification_feature 7 4 'Structure model' pdbx_struct_conn_angle 8 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_sf' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.value' 17 4 'Structure model' '_struct_conn.pdbx_dist_value' 18 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 4 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 20 4 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 21 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CM5 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2006-05-04 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1ZBD unspecified ;STRUCTURAL BASIS OF RAB EFFECTOR SPECIFICITY : CRYSTALSTRUCTURE OF THE SMALL G PROTEIN RAB3A COMPLEXED WITH THEEFFECTOR DOMAIN OF RABPHILIN-3A ; PDB 2CHD unspecified 'CRYSTAL STRUCTURE OF THE C2A DOMAIN OF RABPHILIN-3A' PDB 2CM6 unspecified 'CRYSTAL STRUCTURE OF THE C2B DOMAIN OF RABPHILIN3A' PDB 3RPB unspecified 'THE C2B-DOMAIN OF RABPHILIN: STRUCTURAL VARIATIONS IN A JANUS-FACED DOMAIN' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schlicker, C.' 1 'Montaville, P.' 2 'Sheldrick, G.M.' 3 'Becker, S.' 4 # _citation.id primary _citation.title 'The C2A-C2B Linker Defines the High Affinity Ca2+ Binding Mode of Rabphilin-3A.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 282 _citation.page_first 5015 _citation.page_last ? _citation.year 2007 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17166855 _citation.pdbx_database_id_DOI 10.1074/JBC.M606746200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Montaville, P.' 1 ? primary 'Schlicker, C.' 2 ? primary 'Leonov, A.' 3 ? primary 'Zweckstetter, M.' 4 ? primary 'Sheldrick, G.M.' 5 ? primary 'Becker, S.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man RABPHILIN-3A 19295.396 1 ? ? 'C2B DOMAIN AND LINKER, RESIDUES 519-684' ? 2 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 3 water nat water 18.015 68 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'C2B DOMAIN, EXOPHILIN-1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSARG(MSE)ALYEEEQVERIGDIEERGKILVSL(MSE)YSTQQGGLIVGIIRCVHLAA(MSE)DANGYSDPFVKLWLKP D(MSE)GKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECL KNKDKKIERWHQLQNENHVSSD ; _entity_poly.pdbx_seq_one_letter_code_can ;GSARGMALYEEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQI KKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQNE NHVSSD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ALA n 1 4 ARG n 1 5 GLY n 1 6 MSE n 1 7 ALA n 1 8 LEU n 1 9 TYR n 1 10 GLU n 1 11 GLU n 1 12 GLU n 1 13 GLN n 1 14 VAL n 1 15 GLU n 1 16 ARG n 1 17 ILE n 1 18 GLY n 1 19 ASP n 1 20 ILE n 1 21 GLU n 1 22 GLU n 1 23 ARG n 1 24 GLY n 1 25 LYS n 1 26 ILE n 1 27 LEU n 1 28 VAL n 1 29 SER n 1 30 LEU n 1 31 MSE n 1 32 TYR n 1 33 SER n 1 34 THR n 1 35 GLN n 1 36 GLN n 1 37 GLY n 1 38 GLY n 1 39 LEU n 1 40 ILE n 1 41 VAL n 1 42 GLY n 1 43 ILE n 1 44 ILE n 1 45 ARG n 1 46 CYS n 1 47 VAL n 1 48 HIS n 1 49 LEU n 1 50 ALA n 1 51 ALA n 1 52 MSE n 1 53 ASP n 1 54 ALA n 1 55 ASN n 1 56 GLY n 1 57 TYR n 1 58 SER n 1 59 ASP n 1 60 PRO n 1 61 PHE n 1 62 VAL n 1 63 LYS n 1 64 LEU n 1 65 TRP n 1 66 LEU n 1 67 LYS n 1 68 PRO n 1 69 ASP n 1 70 MSE n 1 71 GLY n 1 72 LYS n 1 73 LYS n 1 74 ALA n 1 75 LYS n 1 76 HIS n 1 77 LYS n 1 78 THR n 1 79 GLN n 1 80 ILE n 1 81 LYS n 1 82 LYS n 1 83 LYS n 1 84 THR n 1 85 LEU n 1 86 ASN n 1 87 PRO n 1 88 GLU n 1 89 PHE n 1 90 ASN n 1 91 GLU n 1 92 GLU n 1 93 PHE n 1 94 PHE n 1 95 TYR n 1 96 ASP n 1 97 ILE n 1 98 LYS n 1 99 HIS n 1 100 SER n 1 101 ASP n 1 102 LEU n 1 103 ALA n 1 104 LYS n 1 105 LYS n 1 106 SER n 1 107 LEU n 1 108 ASP n 1 109 ILE n 1 110 SER n 1 111 VAL n 1 112 TRP n 1 113 ASP n 1 114 TYR n 1 115 ASP n 1 116 ILE n 1 117 GLY n 1 118 LYS n 1 119 SER n 1 120 ASN n 1 121 ASP n 1 122 TYR n 1 123 ILE n 1 124 GLY n 1 125 GLY n 1 126 CYS n 1 127 GLN n 1 128 LEU n 1 129 GLY n 1 130 ILE n 1 131 SER n 1 132 ALA n 1 133 LYS n 1 134 GLY n 1 135 GLU n 1 136 ARG n 1 137 LEU n 1 138 LYS n 1 139 HIS n 1 140 TRP n 1 141 TYR n 1 142 GLU n 1 143 CYS n 1 144 LEU n 1 145 LYS n 1 146 ASN n 1 147 LYS n 1 148 ASP n 1 149 LYS n 1 150 LYS n 1 151 ILE n 1 152 GLU n 1 153 ARG n 1 154 TRP n 1 155 HIS n 1 156 GLN n 1 157 LEU n 1 158 GLN n 1 159 ASN n 1 160 GLU n 1 161 ASN n 1 162 HIS n 1 163 VAL n 1 164 SER n 1 165 SER n 1 166 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name RAT _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'RATTUS NORVEGICUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain B843 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector PGEX-2T _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PGEX-2T-RABPHILIN3A-519-684 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 519 ? ? ? A . n A 1 2 SER 2 520 ? ? ? A . n A 1 3 ALA 3 521 ? ? ? A . n A 1 4 ARG 4 522 ? ? ? A . n A 1 5 GLY 5 523 ? ? ? A . n A 1 6 MSE 6 524 524 MSE MSE A . n A 1 7 ALA 7 525 525 ALA ALA A . n A 1 8 LEU 8 526 526 LEU LEU A . n A 1 9 TYR 9 527 527 TYR TYR A . n A 1 10 GLU 10 528 528 GLU GLU A . n A 1 11 GLU 11 529 529 GLU GLU A . n A 1 12 GLU 12 530 530 GLU GLU A . n A 1 13 GLN 13 531 ? ? ? A . n A 1 14 VAL 14 532 ? ? ? A . n A 1 15 GLU 15 533 ? ? ? A . n A 1 16 ARG 16 534 ? ? ? A . n A 1 17 ILE 17 535 ? ? ? A . n A 1 18 GLY 18 536 ? ? ? A . n A 1 19 ASP 19 537 ? ? ? A . n A 1 20 ILE 20 538 538 ILE ILE A . n A 1 21 GLU 21 539 539 GLU GLU A . n A 1 22 GLU 22 540 540 GLU GLU A . n A 1 23 ARG 23 541 541 ARG ARG A . n A 1 24 GLY 24 542 542 GLY GLY A . n A 1 25 LYS 25 543 543 LYS LYS A . n A 1 26 ILE 26 544 544 ILE ILE A . n A 1 27 LEU 27 545 545 LEU LEU A . n A 1 28 VAL 28 546 546 VAL VAL A . n A 1 29 SER 29 547 547 SER SER A . n A 1 30 LEU 30 548 548 LEU LEU A . n A 1 31 MSE 31 549 549 MSE MSE A . n A 1 32 TYR 32 550 550 TYR TYR A . n A 1 33 SER 33 551 551 SER SER A . n A 1 34 THR 34 552 552 THR THR A . n A 1 35 GLN 35 553 553 GLN GLN A . n A 1 36 GLN 36 554 554 GLN GLN A . n A 1 37 GLY 37 555 555 GLY GLY A . n A 1 38 GLY 38 556 556 GLY GLY A . n A 1 39 LEU 39 557 557 LEU LEU A . n A 1 40 ILE 40 558 558 ILE ILE A . n A 1 41 VAL 41 559 559 VAL VAL A . n A 1 42 GLY 42 560 560 GLY GLY A . n A 1 43 ILE 43 561 561 ILE ILE A . n A 1 44 ILE 44 562 562 ILE ILE A . n A 1 45 ARG 45 563 563 ARG ARG A . n A 1 46 CYS 46 564 564 CYS CYS A . n A 1 47 VAL 47 565 565 VAL VAL A . n A 1 48 HIS 48 566 566 HIS HIS A . n A 1 49 LEU 49 567 567 LEU LEU A . n A 1 50 ALA 50 568 568 ALA ALA A . n A 1 51 ALA 51 569 569 ALA ALA A . n A 1 52 MSE 52 570 570 MSE MSE A . n A 1 53 ASP 53 571 571 ASP ASP A . n A 1 54 ALA 54 572 572 ALA ALA A . n A 1 55 ASN 55 573 573 ASN ASN A . n A 1 56 GLY 56 574 574 GLY GLY A . n A 1 57 TYR 57 575 575 TYR TYR A . n A 1 58 SER 58 576 576 SER SER A . n A 1 59 ASP 59 577 577 ASP ASP A . n A 1 60 PRO 60 578 578 PRO PRO A . n A 1 61 PHE 61 579 579 PHE PHE A . n A 1 62 VAL 62 580 580 VAL VAL A . n A 1 63 LYS 63 581 581 LYS LYS A . n A 1 64 LEU 64 582 582 LEU LEU A . n A 1 65 TRP 65 583 583 TRP TRP A . n A 1 66 LEU 66 584 584 LEU LEU A . n A 1 67 LYS 67 585 585 LYS LYS A . n A 1 68 PRO 68 586 586 PRO PRO A . n A 1 69 ASP 69 587 587 ASP ASP A . n A 1 70 MSE 70 588 ? ? ? A . n A 1 71 GLY 71 589 ? ? ? A . n A 1 72 LYS 72 590 ? ? ? A . n A 1 73 LYS 73 591 591 LYS LYS A . n A 1 74 ALA 74 592 592 ALA ALA A . n A 1 75 LYS 75 593 593 LYS LYS A . n A 1 76 HIS 76 594 594 HIS HIS A . n A 1 77 LYS 77 595 595 LYS LYS A . n A 1 78 THR 78 596 596 THR THR A . n A 1 79 GLN 79 597 597 GLN GLN A . n A 1 80 ILE 80 598 598 ILE ILE A . n A 1 81 LYS 81 599 599 LYS LYS A . n A 1 82 LYS 82 600 600 LYS LYS A . n A 1 83 LYS 83 601 601 LYS LYS A . n A 1 84 THR 84 602 602 THR THR A . n A 1 85 LEU 85 603 603 LEU LEU A . n A 1 86 ASN 86 604 604 ASN ASN A . n A 1 87 PRO 87 605 605 PRO PRO A . n A 1 88 GLU 88 606 606 GLU GLU A . n A 1 89 PHE 89 607 607 PHE PHE A . n A 1 90 ASN 90 608 608 ASN ASN A . n A 1 91 GLU 91 609 609 GLU GLU A . n A 1 92 GLU 92 610 610 GLU GLU A . n A 1 93 PHE 93 611 611 PHE PHE A . n A 1 94 PHE 94 612 612 PHE PHE A . n A 1 95 TYR 95 613 613 TYR TYR A . n A 1 96 ASP 96 614 614 ASP ASP A . n A 1 97 ILE 97 615 615 ILE ILE A . n A 1 98 LYS 98 616 616 LYS LYS A . n A 1 99 HIS 99 617 617 HIS HIS A . n A 1 100 SER 100 618 618 SER SER A . n A 1 101 ASP 101 619 619 ASP ASP A . n A 1 102 LEU 102 620 620 LEU LEU A . n A 1 103 ALA 103 621 621 ALA ALA A . n A 1 104 LYS 104 622 622 LYS LYS A . n A 1 105 LYS 105 623 623 LYS LYS A . n A 1 106 SER 106 624 624 SER SER A . n A 1 107 LEU 107 625 625 LEU LEU A . n A 1 108 ASP 108 626 626 ASP ASP A . n A 1 109 ILE 109 627 627 ILE ILE A . n A 1 110 SER 110 628 628 SER SER A . n A 1 111 VAL 111 629 629 VAL VAL A . n A 1 112 TRP 112 630 630 TRP TRP A . n A 1 113 ASP 113 631 631 ASP ASP A . n A 1 114 TYR 114 632 632 TYR TYR A . n A 1 115 ASP 115 633 633 ASP ASP A . n A 1 116 ILE 116 634 634 ILE ILE A . n A 1 117 GLY 117 635 635 GLY GLY A . n A 1 118 LYS 118 636 636 LYS LYS A . n A 1 119 SER 119 637 637 SER SER A . n A 1 120 ASN 120 638 638 ASN ASN A . n A 1 121 ASP 121 639 639 ASP ASP A . n A 1 122 TYR 122 640 640 TYR TYR A . n A 1 123 ILE 123 641 641 ILE ILE A . n A 1 124 GLY 124 642 642 GLY GLY A . n A 1 125 GLY 125 643 643 GLY GLY A . n A 1 126 CYS 126 644 644 CYS CYS A . n A 1 127 GLN 127 645 645 GLN GLN A . n A 1 128 LEU 128 646 646 LEU LEU A . n A 1 129 GLY 129 647 647 GLY GLY A . n A 1 130 ILE 130 648 648 ILE ILE A . n A 1 131 SER 131 649 649 SER SER A . n A 1 132 ALA 132 650 650 ALA ALA A . n A 1 133 LYS 133 651 651 LYS LYS A . n A 1 134 GLY 134 652 652 GLY GLY A . n A 1 135 GLU 135 653 653 GLU GLU A . n A 1 136 ARG 136 654 654 ARG ARG A . n A 1 137 LEU 137 655 655 LEU LEU A . n A 1 138 LYS 138 656 656 LYS LYS A . n A 1 139 HIS 139 657 657 HIS HIS A . n A 1 140 TRP 140 658 658 TRP TRP A . n A 1 141 TYR 141 659 659 TYR TYR A . n A 1 142 GLU 142 660 660 GLU GLU A . n A 1 143 CYS 143 661 661 CYS CYS A . n A 1 144 LEU 144 662 662 LEU LEU A . n A 1 145 LYS 145 663 663 LYS LYS A . n A 1 146 ASN 146 664 664 ASN ASN A . n A 1 147 LYS 147 665 665 LYS LYS A . n A 1 148 ASP 148 666 666 ASP ASP A . n A 1 149 LYS 149 667 667 LYS LYS A . n A 1 150 LYS 150 668 668 LYS LYS A . n A 1 151 ILE 151 669 669 ILE ILE A . n A 1 152 GLU 152 670 670 GLU GLU A . n A 1 153 ARG 153 671 671 ARG ARG A . n A 1 154 TRP 154 672 672 TRP TRP A . n A 1 155 HIS 155 673 673 HIS HIS A . n A 1 156 GLN 156 674 674 GLN GLN A . n A 1 157 LEU 157 675 675 LEU LEU A . n A 1 158 GLN 158 676 676 GLN GLN A . n A 1 159 ASN 159 677 677 ASN ASN A . n A 1 160 GLU 160 678 ? ? ? A . n A 1 161 ASN 161 679 ? ? ? A . n A 1 162 HIS 162 680 ? ? ? A . n A 1 163 VAL 163 681 ? ? ? A . n A 1 164 SER 164 682 ? ? ? A . n A 1 165 SER 165 683 ? ? ? A . n A 1 166 ASP 166 684 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 1678 1678 CA CA A . C 2 CA 1 1679 1679 CA CA A . D 3 HOH 1 2001 2001 HOH HOH A . D 3 HOH 2 2002 2002 HOH HOH A . D 3 HOH 3 2003 2003 HOH HOH A . D 3 HOH 4 2004 2004 HOH HOH A . D 3 HOH 5 2005 2005 HOH HOH A . D 3 HOH 6 2006 2006 HOH HOH A . D 3 HOH 7 2007 2007 HOH HOH A . D 3 HOH 8 2008 2008 HOH HOH A . D 3 HOH 9 2009 2009 HOH HOH A . D 3 HOH 10 2010 2010 HOH HOH A . D 3 HOH 11 2011 2011 HOH HOH A . D 3 HOH 12 2012 2012 HOH HOH A . D 3 HOH 13 2013 2013 HOH HOH A . D 3 HOH 14 2014 2014 HOH HOH A . D 3 HOH 15 2015 2015 HOH HOH A . D 3 HOH 16 2016 2016 HOH HOH A . D 3 HOH 17 2017 2017 HOH HOH A . D 3 HOH 18 2018 2018 HOH HOH A . D 3 HOH 19 2019 2019 HOH HOH A . D 3 HOH 20 2020 2020 HOH HOH A . D 3 HOH 21 2021 2021 HOH HOH A . D 3 HOH 22 2022 2022 HOH HOH A . D 3 HOH 23 2023 2023 HOH HOH A . D 3 HOH 24 2024 2024 HOH HOH A . D 3 HOH 25 2025 2025 HOH HOH A . D 3 HOH 26 2026 2026 HOH HOH A . D 3 HOH 27 2027 2027 HOH HOH A . D 3 HOH 28 2028 2028 HOH HOH A . D 3 HOH 29 2029 2029 HOH HOH A . D 3 HOH 30 2030 2030 HOH HOH A . D 3 HOH 31 2031 2031 HOH HOH A . D 3 HOH 32 2032 2032 HOH HOH A . D 3 HOH 33 2033 2033 HOH HOH A . D 3 HOH 34 2034 2034 HOH HOH A . D 3 HOH 35 2035 2035 HOH HOH A . D 3 HOH 36 2036 2036 HOH HOH A . D 3 HOH 37 2037 2037 HOH HOH A . D 3 HOH 38 2038 2038 HOH HOH A . D 3 HOH 39 2039 2039 HOH HOH A . D 3 HOH 40 2040 2040 HOH HOH A . D 3 HOH 41 2041 2041 HOH HOH A . D 3 HOH 42 2042 2042 HOH HOH A . D 3 HOH 43 2043 2043 HOH HOH A . D 3 HOH 44 2044 2044 HOH HOH A . D 3 HOH 45 2045 2045 HOH HOH A . D 3 HOH 46 2046 2046 HOH HOH A . D 3 HOH 47 2047 2047 HOH HOH A . D 3 HOH 48 2048 2048 HOH HOH A . D 3 HOH 49 2049 2049 HOH HOH A . D 3 HOH 50 2050 2050 HOH HOH A . D 3 HOH 51 2051 2051 HOH HOH A . D 3 HOH 52 2052 2052 HOH HOH A . D 3 HOH 53 2053 2053 HOH HOH A . D 3 HOH 54 2054 2054 HOH HOH A . D 3 HOH 55 2055 2055 HOH HOH A . D 3 HOH 56 2056 2056 HOH HOH A . D 3 HOH 57 2057 2057 HOH HOH A . D 3 HOH 58 2058 2058 HOH HOH A . D 3 HOH 59 2059 2059 HOH HOH A . D 3 HOH 60 2060 2060 HOH HOH A . D 3 HOH 61 2061 2061 HOH HOH A . D 3 HOH 62 2062 2062 HOH HOH A . D 3 HOH 63 2063 2063 HOH HOH A . D 3 HOH 64 2064 2064 HOH HOH A . D 3 HOH 65 2065 2065 HOH HOH A . D 3 HOH 66 2066 2066 HOH HOH A . D 3 HOH 67 2067 2067 HOH HOH A . D 3 HOH 68 2068 2068 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MSE 524 ? CB ? A MSE 6 CB 2 1 Y 1 A MSE 524 ? CG ? A MSE 6 CG 3 1 Y 1 A MSE 524 ? SE ? A MSE 6 SE 4 1 Y 1 A MSE 524 ? CE ? A MSE 6 CE 5 1 Y 1 A ILE 538 ? CG1 ? A ILE 20 CG1 6 1 Y 1 A ILE 538 ? CG2 ? A ILE 20 CG2 7 1 Y 1 A ILE 538 ? CD1 ? A ILE 20 CD1 8 1 Y 1 A GLN 553 ? CG ? A GLN 35 CG 9 1 Y 1 A GLN 553 ? CD ? A GLN 35 CD 10 1 Y 1 A GLN 553 ? OE1 ? A GLN 35 OE1 11 1 Y 1 A GLN 553 ? NE2 ? A GLN 35 NE2 12 1 Y 1 A LYS 581 ? CD ? A LYS 63 CD 13 1 Y 1 A LYS 581 ? CE ? A LYS 63 CE 14 1 Y 1 A LYS 581 ? NZ ? A LYS 63 NZ 15 1 Y 1 A ASP 587 ? CB ? A ASP 69 CB 16 1 Y 1 A ASP 587 ? CG ? A ASP 69 CG 17 1 Y 1 A ASP 587 ? OD1 ? A ASP 69 OD1 18 1 Y 1 A ASP 587 ? OD2 ? A ASP 69 OD2 19 1 Y 1 A LYS 591 ? CB ? A LYS 73 CB 20 1 Y 1 A LYS 591 ? CG ? A LYS 73 CG 21 1 Y 1 A LYS 591 ? CD ? A LYS 73 CD 22 1 Y 1 A LYS 591 ? CE ? A LYS 73 CE 23 1 Y 1 A LYS 591 ? NZ ? A LYS 73 NZ 24 1 Y 1 A LYS 595 ? CD ? A LYS 77 CD 25 1 Y 1 A LYS 595 ? CE ? A LYS 77 CE 26 1 Y 1 A LYS 595 ? NZ ? A LYS 77 NZ 27 1 Y 1 A LYS 600 ? CD ? A LYS 82 CD 28 1 Y 1 A LYS 600 ? CE ? A LYS 82 CE 29 1 Y 1 A LYS 600 ? NZ ? A LYS 82 NZ 30 1 Y 1 A LYS 601 ? CG ? A LYS 83 CG 31 1 Y 1 A LYS 601 ? CD ? A LYS 83 CD 32 1 Y 1 A LYS 601 ? CE ? A LYS 83 CE 33 1 Y 1 A LYS 601 ? NZ ? A LYS 83 NZ 34 1 Y 1 A LYS 622 ? CE ? A LYS 104 CE 35 1 Y 1 A LYS 622 ? NZ ? A LYS 104 NZ 36 1 Y 1 A GLN 645 ? CG ? A GLN 127 CG 37 1 Y 1 A GLN 645 ? CD ? A GLN 127 CD 38 1 Y 1 A GLN 645 ? OE1 ? A GLN 127 OE1 39 1 Y 1 A GLN 645 ? NE2 ? A GLN 127 NE2 40 1 Y 1 A GLU 653 ? CG ? A GLU 135 CG 41 1 Y 1 A GLU 653 ? CD ? A GLU 135 CD 42 1 Y 1 A GLU 653 ? OE1 ? A GLU 135 OE1 43 1 Y 1 A GLU 653 ? OE2 ? A GLU 135 OE2 44 1 Y 1 A ARG 654 ? CZ ? A ARG 136 CZ 45 1 Y 1 A ARG 654 ? NH1 ? A ARG 136 NH1 46 1 Y 1 A ARG 654 ? NH2 ? A ARG 136 NH2 47 1 Y 1 A LYS 656 ? CG ? A LYS 138 CG 48 1 Y 1 A LYS 656 ? CD ? A LYS 138 CD 49 1 Y 1 A LYS 656 ? CE ? A LYS 138 CE 50 1 Y 1 A LYS 656 ? NZ ? A LYS 138 NZ 51 1 Y 1 A LYS 663 ? NZ ? A LYS 145 NZ 52 1 Y 1 A LYS 668 ? CE ? A LYS 150 CE 53 1 Y 1 A LYS 668 ? NZ ? A LYS 150 NZ 54 1 Y 1 A ASN 677 ? CB ? A ASN 159 CB 55 1 Y 1 A ASN 677 ? CG ? A ASN 159 CG 56 1 Y 1 A ASN 677 ? OD1 ? A ASN 159 OD1 57 1 Y 1 A ASN 677 ? ND2 ? A ASN 159 ND2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 SHELXCD phasing . ? 4 SHELXD phasing . ? 5 SHELXE phasing . ? 6 # _cell.entry_id 2CM5 _cell.length_a 53.898 _cell.length_b 60.043 _cell.length_c 41.928 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CM5 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # _exptl.entry_id 2CM5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2 _exptl_crystal.density_percent_sol 38 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1M HEPES PH 8.5,20 % PEG MME 2000 OR 20 % PEG 8000' # _diffrn.id 1 _diffrn.ambient_temp 89.7 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2005-11-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.95 1.0 2 0.9796 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.95,0.9796 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2CM5 _reflns.observed_criterion_sigma_I 2.750 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.110 _reflns.d_resolution_high 1.280 _reflns.number_obs 33387 _reflns.number_all ? _reflns.percent_possible_obs 94.2 _reflns.pdbx_Rmerge_I_obs 0.03000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.3800 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 1.720 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.28 _reflns_shell.d_res_low 1.38 _reflns_shell.percent_possible_all 72.7 _reflns_shell.Rmerge_I_obs 0.21000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.840 _reflns_shell.pdbx_redundancy 1.16 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2CM5 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 61145 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.75 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.11 _refine.ls_d_res_high 1.28 _refine.ls_percent_reflns_obs 94.2 _refine.ls_R_factor_obs 0.144 _refine.ls_R_factor_all 0.1453 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.1937 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5 _refine.ls_number_reflns_R_free 3060 _refine.ls_number_parameters ? _refine.ls_number_restraints 13375 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1123 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 68 _refine_hist.number_atoms_total 1193 _refine_hist.d_res_high 1.28 _refine_hist.d_res_low 40.11 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.030 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0342 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.061 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.067 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.024 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.004 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.061 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.088 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 2CM5 _pdbx_refine.R_factor_all_no_cutoff 0.1453 _pdbx_refine.R_factor_obs_no_cutoff 0.144 _pdbx_refine.free_R_factor_no_cutoff 0.1937 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 3060 _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 26423 # _database_PDB_matrix.entry_id 2CM5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2CM5 _struct.title 'crystal structure of the C2B domain of rabphilin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CM5 _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text ;PROTEIN TRANSPORT, ZINC-FINGER, RABPHILIN3A, CA2+ BINDING, METAL-BINDING, SYNAPTIC EXOCYTOSIS, C2A-C2B LINKER FRAGMENT, C2B, ZINC, SYNAPSE, C2 DOMAIN, TRANSPORT ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RP3A_RAT _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P47709 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2CM5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 166 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P47709 _struct_ref_seq.db_align_beg 519 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 684 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 519 _struct_ref_seq.pdbx_auth_seq_align_end 684 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 98 ? LYS A 104 ? LYS A 616 LYS A 622 5 ? 7 HELX_P HELX_P2 2 LYS A 133 ? ASN A 146 ? LYS A 651 ASN A 664 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 6 C ? ? ? 1_555 A ALA 7 N ? ? A MSE 524 A ALA 525 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A LEU 30 C ? ? ? 1_555 A MSE 31 N ? ? A LEU 548 A MSE 549 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale3 covale both ? A MSE 31 C ? ? ? 1_555 A TYR 32 N ? ? A MSE 549 A TYR 550 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? A ALA 51 C ? ? ? 1_555 A MSE 52 N ? ? A ALA 569 A MSE 570 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale5 covale both ? A MSE 52 C ? ? ? 1_555 A ASP 53 N A ? A MSE 570 A ASP 571 1_555 ? ? ? ? ? ? ? 1.344 ? ? metalc1 metalc ? ? A GLU 11 O ? ? ? 1_555 B CA . CA ? ? A GLU 529 A CA 1678 1_555 ? ? ? ? ? ? ? 2.276 ? ? metalc2 metalc ? ? A MSE 52 O ? ? ? 1_555 B CA . CA ? ? A MSE 570 A CA 1678 1_555 ? ? ? ? ? ? ? 2.379 ? ? metalc3 metalc ? ? A ASP 53 OD1 A ? ? 1_555 B CA . CA ? ? A ASP 571 A CA 1678 1_555 ? ? ? ? ? ? ? 2.362 ? ? metalc4 metalc ? ? A ASP 53 OD1 A ? ? 1_555 C CA . CA ? ? A ASP 571 A CA 1679 1_555 ? ? ? ? ? ? ? 2.691 ? ? metalc5 metalc ? ? A ASP 53 OD2 A ? ? 1_555 C CA . CA ? ? A ASP 571 A CA 1679 1_555 ? ? ? ? ? ? ? 2.367 ? ? metalc6 metalc ? ? A ASP 59 OD2 ? ? ? 1_555 C CA . CA ? ? A ASP 577 A CA 1679 1_555 ? ? ? ? ? ? ? 2.316 ? ? metalc7 metalc ? ? A ASP 113 OD2 ? ? ? 1_555 B CA . CA ? ? A ASP 631 A CA 1678 1_555 ? ? ? ? ? ? ? 2.267 ? ? metalc8 metalc ? ? A ASP 113 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 631 A CA 1679 1_555 ? ? ? ? ? ? ? 2.386 ? ? metalc9 metalc ? ? A ASP 113 OD2 ? ? ? 1_555 C CA . CA ? ? A ASP 631 A CA 1679 1_555 ? ? ? ? ? ? ? 3.224 ? ? metalc10 metalc ? ? A TYR 114 O ? ? ? 1_555 C CA . CA ? ? A TYR 632 A CA 1679 1_555 ? ? ? ? ? ? ? 2.424 ? ? metalc11 metalc ? ? A ASP 115 OD1 ? ? ? 1_555 B CA . CA ? ? A ASP 633 A CA 1678 1_555 ? ? ? ? ? ? ? 2.578 ? ? metalc12 metalc ? ? A ASP 115 OD2 ? ? ? 1_555 B CA . CA ? ? A ASP 633 A CA 1678 1_555 ? ? ? ? ? ? ? 2.485 ? ? metalc13 metalc ? ? A ASP 115 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 633 A CA 1679 1_555 ? ? ? ? ? ? ? 2.307 ? ? metalc14 metalc ? ? A ASP 121 OD2 ? ? ? 1_555 B CA . CA ? ? A ASP 639 A CA 1678 1_555 ? ? ? ? ? ? ? 2.328 ? ? metalc15 metalc ? ? C CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 1679 A HOH 2014 1_555 ? ? ? ? ? ? ? 2.398 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A GLU 11 ? A GLU 529 ? 1_555 CA ? B CA . ? A CA 1678 ? 1_555 O ? A MSE 52 ? A MSE 570 ? 1_555 84.1 ? 2 O ? A GLU 11 ? A GLU 529 ? 1_555 CA ? B CA . ? A CA 1678 ? 1_555 OD1 A A ASP 53 ? A ASP 571 ? 1_555 87.6 ? 3 O ? A MSE 52 ? A MSE 570 ? 1_555 CA ? B CA . ? A CA 1678 ? 1_555 OD1 A A ASP 53 ? A ASP 571 ? 1_555 80.1 ? 4 O ? A GLU 11 ? A GLU 529 ? 1_555 CA ? B CA . ? A CA 1678 ? 1_555 OD2 ? A ASP 113 ? A ASP 631 ? 1_555 170.7 ? 5 O ? A MSE 52 ? A MSE 570 ? 1_555 CA ? B CA . ? A CA 1678 ? 1_555 OD2 ? A ASP 113 ? A ASP 631 ? 1_555 91.8 ? 6 OD1 A A ASP 53 ? A ASP 571 ? 1_555 CA ? B CA . ? A CA 1678 ? 1_555 OD2 ? A ASP 113 ? A ASP 631 ? 1_555 83.4 ? 7 O ? A GLU 11 ? A GLU 529 ? 1_555 CA ? B CA . ? A CA 1678 ? 1_555 OD1 ? A ASP 115 ? A ASP 633 ? 1_555 102.9 ? 8 O ? A MSE 52 ? A MSE 570 ? 1_555 CA ? B CA . ? A CA 1678 ? 1_555 OD1 ? A ASP 115 ? A ASP 633 ? 1_555 149.7 ? 9 OD1 A A ASP 53 ? A ASP 571 ? 1_555 CA ? B CA . ? A CA 1678 ? 1_555 OD1 ? A ASP 115 ? A ASP 633 ? 1_555 70.9 ? 10 OD2 ? A ASP 113 ? A ASP 631 ? 1_555 CA ? B CA . ? A CA 1678 ? 1_555 OD1 ? A ASP 115 ? A ASP 633 ? 1_555 76.6 ? 11 O ? A GLU 11 ? A GLU 529 ? 1_555 CA ? B CA . ? A CA 1678 ? 1_555 OD2 ? A ASP 115 ? A ASP 633 ? 1_555 84.2 ? 12 O ? A MSE 52 ? A MSE 570 ? 1_555 CA ? B CA . ? A CA 1678 ? 1_555 OD2 ? A ASP 115 ? A ASP 633 ? 1_555 158.1 ? 13 OD1 A A ASP 53 ? A ASP 571 ? 1_555 CA ? B CA . ? A CA 1678 ? 1_555 OD2 ? A ASP 115 ? A ASP 633 ? 1_555 117.8 ? 14 OD2 ? A ASP 113 ? A ASP 631 ? 1_555 CA ? B CA . ? A CA 1678 ? 1_555 OD2 ? A ASP 115 ? A ASP 633 ? 1_555 102.3 ? 15 OD1 ? A ASP 115 ? A ASP 633 ? 1_555 CA ? B CA . ? A CA 1678 ? 1_555 OD2 ? A ASP 115 ? A ASP 633 ? 1_555 51.7 ? 16 O ? A GLU 11 ? A GLU 529 ? 1_555 CA ? B CA . ? A CA 1678 ? 1_555 OD2 ? A ASP 121 ? A ASP 639 ? 1_555 91.8 ? 17 O ? A MSE 52 ? A MSE 570 ? 1_555 CA ? B CA . ? A CA 1678 ? 1_555 OD2 ? A ASP 121 ? A ASP 639 ? 1_555 82.3 ? 18 OD1 A A ASP 53 ? A ASP 571 ? 1_555 CA ? B CA . ? A CA 1678 ? 1_555 OD2 ? A ASP 121 ? A ASP 639 ? 1_555 162.4 ? 19 OD2 ? A ASP 113 ? A ASP 631 ? 1_555 CA ? B CA . ? A CA 1678 ? 1_555 OD2 ? A ASP 121 ? A ASP 639 ? 1_555 95.9 ? 20 OD1 ? A ASP 115 ? A ASP 633 ? 1_555 CA ? B CA . ? A CA 1678 ? 1_555 OD2 ? A ASP 121 ? A ASP 639 ? 1_555 126.2 ? 21 OD2 ? A ASP 115 ? A ASP 633 ? 1_555 CA ? B CA . ? A CA 1678 ? 1_555 OD2 ? A ASP 121 ? A ASP 639 ? 1_555 79.6 ? 22 OD1 A A ASP 53 ? A ASP 571 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 OD2 A A ASP 53 ? A ASP 571 ? 1_555 51.2 ? 23 OD1 A A ASP 53 ? A ASP 571 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 OD2 ? A ASP 59 ? A ASP 577 ? 1_555 128.2 ? 24 OD2 A A ASP 53 ? A ASP 571 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 OD2 ? A ASP 59 ? A ASP 577 ? 1_555 79.0 ? 25 OD1 A A ASP 53 ? A ASP 571 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 OD1 ? A ASP 113 ? A ASP 631 ? 1_555 96.1 ? 26 OD2 A A ASP 53 ? A ASP 571 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 OD1 ? A ASP 113 ? A ASP 631 ? 1_555 88.4 ? 27 OD2 ? A ASP 59 ? A ASP 577 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 OD1 ? A ASP 113 ? A ASP 631 ? 1_555 95.9 ? 28 OD1 A A ASP 53 ? A ASP 571 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 OD2 ? A ASP 113 ? A ASP 631 ? 1_555 62.0 ? 29 OD2 A A ASP 53 ? A ASP 571 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 OD2 ? A ASP 113 ? A ASP 631 ? 1_555 86.8 ? 30 OD2 ? A ASP 59 ? A ASP 577 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 OD2 ? A ASP 113 ? A ASP 631 ? 1_555 137.1 ? 31 OD1 ? A ASP 113 ? A ASP 631 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 OD2 ? A ASP 113 ? A ASP 631 ? 1_555 43.0 ? 32 OD1 A A ASP 53 ? A ASP 571 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 O ? A TYR 114 ? A TYR 632 ? 1_555 148.3 ? 33 OD2 A A ASP 53 ? A ASP 571 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 O ? A TYR 114 ? A TYR 632 ? 1_555 159.1 ? 34 OD2 ? A ASP 59 ? A ASP 577 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 O ? A TYR 114 ? A TYR 632 ? 1_555 83.2 ? 35 OD1 ? A ASP 113 ? A ASP 631 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 O ? A TYR 114 ? A TYR 632 ? 1_555 82.5 ? 36 OD2 ? A ASP 113 ? A ASP 631 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 O ? A TYR 114 ? A TYR 632 ? 1_555 99.0 ? 37 OD1 A A ASP 53 ? A ASP 571 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 OD1 ? A ASP 115 ? A ASP 633 ? 1_555 69.6 ? 38 OD2 A A ASP 53 ? A ASP 571 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 OD1 ? A ASP 115 ? A ASP 633 ? 1_555 120.8 ? 39 OD2 ? A ASP 59 ? A ASP 577 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 OD1 ? A ASP 115 ? A ASP 633 ? 1_555 155.4 ? 40 OD1 ? A ASP 113 ? A ASP 631 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 OD1 ? A ASP 115 ? A ASP 633 ? 1_555 98.8 ? 41 OD2 ? A ASP 113 ? A ASP 631 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 OD1 ? A ASP 115 ? A ASP 633 ? 1_555 63.5 ? 42 O ? A TYR 114 ? A TYR 632 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 OD1 ? A ASP 115 ? A ASP 633 ? 1_555 79.3 ? 43 OD1 A A ASP 53 ? A ASP 571 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 O ? D HOH . ? A HOH 2014 ? 1_555 87.1 ? 44 OD2 A A ASP 53 ? A ASP 571 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 O ? D HOH . ? A HOH 2014 ? 1_555 90.0 ? 45 OD2 ? A ASP 59 ? A ASP 577 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 O ? D HOH . ? A HOH 2014 ? 1_555 78.5 ? 46 OD1 ? A ASP 113 ? A ASP 631 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 O ? D HOH . ? A HOH 2014 ? 1_555 174.4 ? 47 OD2 ? A ASP 113 ? A ASP 631 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 O ? D HOH . ? A HOH 2014 ? 1_555 142.3 ? 48 O ? A TYR 114 ? A TYR 632 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 O ? D HOH . ? A HOH 2014 ? 1_555 97.2 ? 49 OD1 ? A ASP 115 ? A ASP 633 ? 1_555 CA ? C CA . ? A CA 1679 ? 1_555 O ? D HOH . ? A HOH 2014 ? 1_555 86.6 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 6 ? . . . . MSE A 524 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 31 ? . . . . MSE A 549 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE A 52 ? . . . . MSE A 570 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 67 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 585 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 68 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 586 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.48 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? AB ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLU A 88 ? ASP A 96 ? GLU A 606 ASP A 614 AA 2 GLY A 38 ? VAL A 47 ? GLY A 556 VAL A 565 AA 3 LYS A 25 ? SER A 33 ? LYS A 543 SER A 551 AA 4 ILE A 151 ? GLN A 156 ? ILE A 669 GLN A 674 AB 1 LYS A 75 ? LYS A 77 ? LYS A 593 LYS A 595 AB 2 PRO A 60 ? LYS A 67 ? PRO A 578 LYS A 585 AB 3 SER A 106 ? ASP A 113 ? SER A 624 ASP A 631 AB 4 ASP A 121 ? GLY A 129 ? ASP A 639 GLY A 647 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N TYR A 95 ? N TYR A 613 O LEU A 39 ? O LEU A 557 AA 2 3 N VAL A 47 ? N VAL A 565 O LYS A 25 ? O LYS A 543 AA 3 4 N LEU A 30 ? N LEU A 548 O ILE A 151 ? O ILE A 669 AB 1 2 N HIS A 76 ? N HIS A 594 O LEU A 64 ? O LEU A 582 AB 2 3 N LYS A 67 ? N LYS A 585 O SER A 106 ? O SER A 624 AB 3 4 N ASP A 113 ? N ASP A 631 O ASP A 121 ? O ASP A 639 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE CA A1678' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE CA A1679' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLU A 11 ? GLU A 529 . ? 1_555 ? 2 AC1 6 MSE A 52 ? MSE A 570 . ? 1_555 ? 3 AC1 6 ASP A 53 ? ASP A 571 . ? 1_555 ? 4 AC1 6 ASP A 113 ? ASP A 631 . ? 1_555 ? 5 AC1 6 ASP A 115 ? ASP A 633 . ? 1_555 ? 6 AC1 6 ASP A 121 ? ASP A 639 . ? 1_555 ? 7 AC2 6 ASP A 53 ? ASP A 571 . ? 1_555 ? 8 AC2 6 ASP A 59 ? ASP A 577 . ? 1_555 ? 9 AC2 6 ASP A 113 ? ASP A 631 . ? 1_555 ? 10 AC2 6 TYR A 114 ? TYR A 632 . ? 1_555 ? 11 AC2 6 ASP A 115 ? ASP A 633 . ? 1_555 ? 12 AC2 6 HOH D . ? HOH A 2014 . ? 1_555 ? # _pdbx_entry_details.entry_id 2CM5 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 541 ? ? CZ A ARG 541 ? ? NH2 A ARG 541 ? ? 116.65 120.30 -3.65 0.50 N 2 1 CB A TYR 550 ? ? CG A TYR 550 ? ? CD2 A TYR 550 ? ? 124.96 121.00 3.96 0.60 N 3 1 CB A TYR 575 ? ? CG A TYR 575 ? ? CD1 A TYR 575 ? ? 117.10 121.00 -3.90 0.60 N 4 1 NE A ARG 671 ? ? CZ A ARG 671 ? ? NH1 A ARG 671 ? ? 124.99 120.30 4.69 0.50 N 5 1 NE A ARG 671 ? ? CZ A ARG 671 ? ? NH2 A ARG 671 ? ? 116.76 120.30 -3.54 0.50 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 6 A MSE 524 ? MET SELENOMETHIONINE 2 A MSE 31 A MSE 549 ? MET SELENOMETHIONINE 3 A MSE 52 A MSE 570 ? MET SELENOMETHIONINE # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2036 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 519 ? A GLY 1 2 1 Y 1 A SER 520 ? A SER 2 3 1 Y 1 A ALA 521 ? A ALA 3 4 1 Y 1 A ARG 522 ? A ARG 4 5 1 Y 1 A GLY 523 ? A GLY 5 6 1 Y 1 A GLN 531 ? A GLN 13 7 1 Y 1 A VAL 532 ? A VAL 14 8 1 Y 1 A GLU 533 ? A GLU 15 9 1 Y 1 A ARG 534 ? A ARG 16 10 1 Y 1 A ILE 535 ? A ILE 17 11 1 Y 1 A GLY 536 ? A GLY 18 12 1 Y 1 A ASP 537 ? A ASP 19 13 1 Y 1 A MSE 588 ? A MSE 70 14 1 Y 1 A GLY 589 ? A GLY 71 15 1 Y 1 A LYS 590 ? A LYS 72 16 1 Y 1 A GLU 678 ? A GLU 160 17 1 Y 1 A ASN 679 ? A ASN 161 18 1 Y 1 A HIS 680 ? A HIS 162 19 1 Y 1 A VAL 681 ? A VAL 163 20 1 Y 1 A SER 682 ? A SER 164 21 1 Y 1 A SER 683 ? A SER 165 22 1 Y 1 A ASP 684 ? A ASP 166 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 HIS N N N N 138 HIS CA C N S 139 HIS C C N N 140 HIS O O N N 141 HIS CB C N N 142 HIS CG C Y N 143 HIS ND1 N Y N 144 HIS CD2 C Y N 145 HIS CE1 C Y N 146 HIS NE2 N Y N 147 HIS OXT O N N 148 HIS H H N N 149 HIS H2 H N N 150 HIS HA H N N 151 HIS HB2 H N N 152 HIS HB3 H N N 153 HIS HD1 H N N 154 HIS HD2 H N N 155 HIS HE1 H N N 156 HIS HE2 H N N 157 HIS HXT H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 ILE N N N N 162 ILE CA C N S 163 ILE C C N N 164 ILE O O N N 165 ILE CB C N S 166 ILE CG1 C N N 167 ILE CG2 C N N 168 ILE CD1 C N N 169 ILE OXT O N N 170 ILE H H N N 171 ILE H2 H N N 172 ILE HA H N N 173 ILE HB H N N 174 ILE HG12 H N N 175 ILE HG13 H N N 176 ILE HG21 H N N 177 ILE HG22 H N N 178 ILE HG23 H N N 179 ILE HD11 H N N 180 ILE HD12 H N N 181 ILE HD13 H N N 182 ILE HXT H N N 183 LEU N N N N 184 LEU CA C N S 185 LEU C C N N 186 LEU O O N N 187 LEU CB C N N 188 LEU CG C N N 189 LEU CD1 C N N 190 LEU CD2 C N N 191 LEU OXT O N N 192 LEU H H N N 193 LEU H2 H N N 194 LEU HA H N N 195 LEU HB2 H N N 196 LEU HB3 H N N 197 LEU HG H N N 198 LEU HD11 H N N 199 LEU HD12 H N N 200 LEU HD13 H N N 201 LEU HD21 H N N 202 LEU HD22 H N N 203 LEU HD23 H N N 204 LEU HXT H N N 205 LYS N N N N 206 LYS CA C N S 207 LYS C C N N 208 LYS O O N N 209 LYS CB C N N 210 LYS CG C N N 211 LYS CD C N N 212 LYS CE C N N 213 LYS NZ N N N 214 LYS OXT O N N 215 LYS H H N N 216 LYS H2 H N N 217 LYS HA H N N 218 LYS HB2 H N N 219 LYS HB3 H N N 220 LYS HG2 H N N 221 LYS HG3 H N N 222 LYS HD2 H N N 223 LYS HD3 H N N 224 LYS HE2 H N N 225 LYS HE3 H N N 226 LYS HZ1 H N N 227 LYS HZ2 H N N 228 LYS HZ3 H N N 229 LYS HXT H N N 230 MSE N N N N 231 MSE CA C N S 232 MSE C C N N 233 MSE O O N N 234 MSE OXT O N N 235 MSE CB C N N 236 MSE CG C N N 237 MSE SE SE N N 238 MSE CE C N N 239 MSE H H N N 240 MSE H2 H N N 241 MSE HA H N N 242 MSE HXT H N N 243 MSE HB2 H N N 244 MSE HB3 H N N 245 MSE HG2 H N N 246 MSE HG3 H N N 247 MSE HE1 H N N 248 MSE HE2 H N N 249 MSE HE3 H N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 PRO N N N N 274 PRO CA C N S 275 PRO C C N N 276 PRO O O N N 277 PRO CB C N N 278 PRO CG C N N 279 PRO CD C N N 280 PRO OXT O N N 281 PRO H H N N 282 PRO HA H N N 283 PRO HB2 H N N 284 PRO HB3 H N N 285 PRO HG2 H N N 286 PRO HG3 H N N 287 PRO HD2 H N N 288 PRO HD3 H N N 289 PRO HXT H N N 290 SER N N N N 291 SER CA C N S 292 SER C C N N 293 SER O O N N 294 SER CB C N N 295 SER OG O N N 296 SER OXT O N N 297 SER H H N N 298 SER H2 H N N 299 SER HA H N N 300 SER HB2 H N N 301 SER HB3 H N N 302 SER HG H N N 303 SER HXT H N N 304 THR N N N N 305 THR CA C N S 306 THR C C N N 307 THR O O N N 308 THR CB C N R 309 THR OG1 O N N 310 THR CG2 C N N 311 THR OXT O N N 312 THR H H N N 313 THR H2 H N N 314 THR HA H N N 315 THR HB H N N 316 THR HG1 H N N 317 THR HG21 H N N 318 THR HG22 H N N 319 THR HG23 H N N 320 THR HXT H N N 321 TRP N N N N 322 TRP CA C N S 323 TRP C C N N 324 TRP O O N N 325 TRP CB C N N 326 TRP CG C Y N 327 TRP CD1 C Y N 328 TRP CD2 C Y N 329 TRP NE1 N Y N 330 TRP CE2 C Y N 331 TRP CE3 C Y N 332 TRP CZ2 C Y N 333 TRP CZ3 C Y N 334 TRP CH2 C Y N 335 TRP OXT O N N 336 TRP H H N N 337 TRP H2 H N N 338 TRP HA H N N 339 TRP HB2 H N N 340 TRP HB3 H N N 341 TRP HD1 H N N 342 TRP HE1 H N N 343 TRP HE3 H N N 344 TRP HZ2 H N N 345 TRP HZ3 H N N 346 TRP HH2 H N N 347 TRP HXT H N N 348 TYR N N N N 349 TYR CA C N S 350 TYR C C N N 351 TYR O O N N 352 TYR CB C N N 353 TYR CG C Y N 354 TYR CD1 C Y N 355 TYR CD2 C Y N 356 TYR CE1 C Y N 357 TYR CE2 C Y N 358 TYR CZ C Y N 359 TYR OH O N N 360 TYR OXT O N N 361 TYR H H N N 362 TYR H2 H N N 363 TYR HA H N N 364 TYR HB2 H N N 365 TYR HB3 H N N 366 TYR HD1 H N N 367 TYR HD2 H N N 368 TYR HE1 H N N 369 TYR HE2 H N N 370 TYR HH H N N 371 TYR HXT H N N 372 VAL N N N N 373 VAL CA C N S 374 VAL C C N N 375 VAL O O N N 376 VAL CB C N N 377 VAL CG1 C N N 378 VAL CG2 C N N 379 VAL OXT O N N 380 VAL H H N N 381 VAL H2 H N N 382 VAL HA H N N 383 VAL HB H N N 384 VAL HG11 H N N 385 VAL HG12 H N N 386 VAL HG13 H N N 387 VAL HG21 H N N 388 VAL HG22 H N N 389 VAL HG23 H N N 390 VAL HXT H N N 391 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MSE N CA sing N N 218 MSE N H sing N N 219 MSE N H2 sing N N 220 MSE CA C sing N N 221 MSE CA CB sing N N 222 MSE CA HA sing N N 223 MSE C O doub N N 224 MSE C OXT sing N N 225 MSE OXT HXT sing N N 226 MSE CB CG sing N N 227 MSE CB HB2 sing N N 228 MSE CB HB3 sing N N 229 MSE CG SE sing N N 230 MSE CG HG2 sing N N 231 MSE CG HG3 sing N N 232 MSE SE CE sing N N 233 MSE CE HE1 sing N N 234 MSE CE HE2 sing N N 235 MSE CE HE3 sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _atom_sites.entry_id 2CM5 _atom_sites.fract_transf_matrix[1][1] 0.018554 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016655 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023850 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S SE # loop_