HEADER PROTEIN TRANSPORT 04-MAY-06 2CM5 TITLE CRYSTAL STRUCTURE OF THE C2B DOMAIN OF RABPHILIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RABPHILIN-3A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C2B DOMAIN AND LINKER, RESIDUES 519-684; COMPND 5 SYNONYM: C2B DOMAIN, EXOPHILIN-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B843; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-2T; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-2T-RABPHILIN3A-519-684 KEYWDS PROTEIN TRANSPORT, ZINC-FINGER, RABPHILIN3A, CA2+ BINDING, KEYWDS 2 METAL-BINDING, SYNAPTIC EXOCYTOSIS, C2A-C2B LINKER KEYWDS 3 FRAGMENT, C2B, ZINC, SYNAPSE, C2 DOMAIN, TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR C.SCHLICKER,P.MONTAVILLE,G.M.SHELDRICK,S.BECKER REVDAT 5 24-FEB-09 2CM5 1 VERSN REVDAT 4 20-FEB-07 2CM5 1 REVDAT JRNL REVDAT 3 08-JAN-07 2CM5 1 HEADER JRNL REVDAT 2 02-JAN-07 2CM5 1 JRNL REVDAT 1 04-DEC-06 2CM5 0 JRNL AUTH P.MONTAVILLE,C.SCHLICKER,A.LEONOV,M.ZWECKSTETTER, JRNL AUTH 2 G.M.SHELDRICK,S.BECKER JRNL TITL THE C2A-C2B LINKER DEFINES THE HIGH AFFINITY CA2+ JRNL TITL 2 BINDING MODE OF RABPHILIN-3A. JRNL REF J.BIOL.CHEM. V. 282 5015 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17166855 JRNL DOI 10.1074/JBC.M606746200 REMARK 2 REMARK 2 RESOLUTION. 1.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.75 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1453 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.144 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.1937 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 3060 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 61145 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 26423 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1103 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : 13375 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 ANGLE DISTANCES (A) : 0.030 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.0342 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.061 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.067 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.024 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.004 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.061 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.088 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : NULL REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CM5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-MAY-06. REMARK 100 THE PDBE ID CODE IS EBI-28531. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 89.7 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95,0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33387 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.280 REMARK 200 RESOLUTION RANGE LOW (A) : 40.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.750 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 1.720 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.16 REMARK 200 R MERGE FOR SHELL (I) : 0.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXC, SHELXD, SHELXE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 8.5,20 % PEG MME REMARK 280 2000 OR 20 % PEG 8000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 26.94900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.02150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.94900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.02150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 HOH A2036 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 519 REMARK 465 SER A 520 REMARK 465 ALA A 521 REMARK 465 ARG A 522 REMARK 465 GLY A 523 REMARK 465 GLN A 531 REMARK 465 VAL A 532 REMARK 465 GLU A 533 REMARK 465 ARG A 534 REMARK 465 ILE A 535 REMARK 465 GLY A 536 REMARK 465 ASP A 537 REMARK 465 MSE A 588 REMARK 465 GLY A 589 REMARK 465 LYS A 590 REMARK 465 GLU A 678 REMARK 465 ASN A 679 REMARK 465 HIS A 680 REMARK 465 VAL A 681 REMARK 465 SER A 682 REMARK 465 SER A 683 REMARK 465 ASP A 684 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 524 CB CG SE CE REMARK 470 ILE A 538 CG1 CG2 CD1 REMARK 470 GLN A 553 CG CD OE1 NE2 REMARK 470 LYS A 581 CD CE NZ REMARK 470 ASP A 587 CB CG OD1 OD2 REMARK 470 LYS A 591 CB CG CD CE NZ REMARK 470 LYS A 595 CD CE NZ REMARK 470 LYS A 600 CD CE NZ REMARK 470 LYS A 601 CG CD CE NZ REMARK 470 LYS A 622 CE NZ REMARK 470 GLN A 645 CG CD OE1 NE2 REMARK 470 GLU A 653 CG CD OE1 OE2 REMARK 470 ARG A 654 CZ NH1 NH2 REMARK 470 LYS A 656 CG CD CE NZ REMARK 470 LYS A 663 NZ REMARK 470 LYS A 668 CE NZ REMARK 470 ASN A 677 CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 541 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 TYR A 550 CB - CG - CD2 ANGL. DEV. = 4.0 DEGREES REMARK 500 TYR A 575 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 671 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 671 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MSE A 549 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1678 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 571A OD1 REMARK 620 2 GLU A 529 O 87.6 REMARK 620 3 ASP A 633 OD1 70.9 102.9 REMARK 620 4 ASP A 633 OD2 117.8 84.2 51.7 REMARK 620 5 ASP A 639 OD2 162.4 91.8 126.2 79.6 REMARK 620 6 MSE A 570 O 80.1 84.1 149.7 158.1 82.3 REMARK 620 7 ASP A 631 OD2 83.4 170.7 76.6 102.3 95.9 91.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1679 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2014 O REMARK 620 2 ASP A 577 OD2 78.5 REMARK 620 3 ASP A 571A OD1 87.1 128.2 REMARK 620 4 ASP A 571A OD2 90.0 79.0 51.2 REMARK 620 5 TYR A 632 O 97.2 83.2 148.3 159.1 REMARK 620 6 ASP A 633 OD1 86.6 155.4 69.6 120.8 79.3 REMARK 620 7 ASP A 631 OD1 174.4 95.9 96.1 88.4 82.5 98.8 REMARK 620 8 ASP A 631 OD2 142.3 137.1 62.0 86.8 99.0 63.5 43.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1678 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1679 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZBD RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF RAB EFFECTOR SPECIFICITY REMARK 900 : CRYSTALSTRUCTURE OF THE SMALL G PROTEIN REMARK 900 RAB3A COMPLEXED WITH THEEFFECTOR DOMAIN OF REMARK 900 RABPHILIN-3A REMARK 900 RELATED ID: 2CHD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C2A DOMAIN OF REMARK 900 RABPHILIN-3A REMARK 900 RELATED ID: 2CM6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C2B DOMAIN OF REMARK 900 RABPHILIN3A REMARK 900 RELATED ID: 3RPB RELATED DB: PDB REMARK 900 THE C2B-DOMAIN OF RABPHILIN: STRUCTURAL REMARK 900 VARIATIONS IN A JANUS-FACED DOMAIN DBREF 2CM5 A 519 684 UNP P47709 RP3A_RAT 519 684 SEQRES 1 A 166 GLY SER ALA ARG GLY MSE ALA LEU TYR GLU GLU GLU GLN SEQRES 2 A 166 VAL GLU ARG ILE GLY ASP ILE GLU GLU ARG GLY LYS ILE SEQRES 3 A 166 LEU VAL SER LEU MSE TYR SER THR GLN GLN GLY GLY LEU SEQRES 4 A 166 ILE VAL GLY ILE ILE ARG CYS VAL HIS LEU ALA ALA MSE SEQRES 5 A 166 ASP ALA ASN GLY TYR SER ASP PRO PHE VAL LYS LEU TRP SEQRES 6 A 166 LEU LYS PRO ASP MSE GLY LYS LYS ALA LYS HIS LYS THR SEQRES 7 A 166 GLN ILE LYS LYS LYS THR LEU ASN PRO GLU PHE ASN GLU SEQRES 8 A 166 GLU PHE PHE TYR ASP ILE LYS HIS SER ASP LEU ALA LYS SEQRES 9 A 166 LYS SER LEU ASP ILE SER VAL TRP ASP TYR ASP ILE GLY SEQRES 10 A 166 LYS SER ASN ASP TYR ILE GLY GLY CYS GLN LEU GLY ILE SEQRES 11 A 166 SER ALA LYS GLY GLU ARG LEU LYS HIS TRP TYR GLU CYS SEQRES 12 A 166 LEU LYS ASN LYS ASP LYS LYS ILE GLU ARG TRP HIS GLN SEQRES 13 A 166 LEU GLN ASN GLU ASN HIS VAL SER SER ASP MODRES 2CM5 MSE A 524 MET SELENOMETHIONINE MODRES 2CM5 MSE A 549 MET SELENOMETHIONINE MODRES 2CM5 MSE A 570 MET SELENOMETHIONINE HET MSE A 524 4 HET MSE A 549 8 HET MSE A 570 8 HET CA A1678 1 HET CA A1679 1 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 CA 2(CA 2+) FORMUL 4 HOH *68(H2 O1) HELIX 1 1 LYS A 616 LYS A 622 5 7 HELIX 2 2 LYS A 651 ASN A 664 1 14 SHEET 1 AA 4 GLU A 606 ASP A 614 0 SHEET 2 AA 4 GLY A 556 VAL A 565 -1 O LEU A 557 N TYR A 613 SHEET 3 AA 4 LYS A 543 SER A 551 -1 O LYS A 543 N VAL A 565 SHEET 4 AA 4 ILE A 669 GLN A 674 -1 O ILE A 669 N LEU A 548 SHEET 1 AB 4 LYS A 593 LYS A 595 0 SHEET 2 AB 4 PRO A 578 LYS A 585 -1 O LEU A 582 N HIS A 594 SHEET 3 AB 4 SER A 624 ASP A 631 -1 O SER A 624 N LYS A 585 SHEET 4 AB 4 ASP A 639 GLY A 647 -1 O ASP A 639 N ASP A 631 LINK C MSE A 524 N ALA A 525 1555 1555 1.33 LINK C LEU A 548 N MSE A 549 1555 1555 1.33 LINK C MSE A 549 N TYR A 550 1555 1555 1.33 LINK C ALA A 569 N MSE A 570 1555 1555 1.33 LINK C MSE A 570 N AASP A 571 1555 1555 1.34 LINK CA CA A1678 OD1AASP A 571 1555 1555 2.36 LINK CA CA A1678 O GLU A 529 1555 1555 2.28 LINK CA CA A1678 OD1 ASP A 633 1555 1555 2.58 LINK CA CA A1678 OD2 ASP A 633 1555 1555 2.48 LINK CA CA A1678 OD2 ASP A 639 1555 1555 2.33 LINK CA CA A1678 O MSE A 570 1555 1555 2.38 LINK CA CA A1678 OD2 ASP A 631 1555 1555 2.27 LINK CA CA A1679 OD2 ASP A 577 1555 1555 2.32 LINK CA CA A1679 OD1AASP A 571 1555 1555 2.69 LINK CA CA A1679 OD2AASP A 571 1555 1555 2.37 LINK CA CA A1679 O TYR A 632 1555 1555 2.42 LINK CA CA A1679 OD1 ASP A 633 1555 1555 2.31 LINK CA CA A1679 OD1 ASP A 631 1555 1555 2.39 LINK CA CA A1679 OD2 ASP A 631 1555 1555 3.22 LINK CA CA A1679 O HOH A2014 1555 1555 2.40 CISPEP 1 LYS A 585 PRO A 586 0 -2.48 SITE 1 AC1 6 GLU A 529 MSE A 570 ASP A 571 ASP A 631 SITE 2 AC1 6 ASP A 633 ASP A 639 SITE 1 AC2 6 ASP A 571 ASP A 577 ASP A 631 TYR A 632 SITE 2 AC2 6 ASP A 633 HOH A2014 CRYST1 53.898 60.043 41.928 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018554 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016655 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023850 0.00000 HETATM 1 N MSE A 524 25.797 11.890 -11.491 1.00 39.91 N ANISOU 1 N MSE A 524 5875 7671 1617 -2747 1408 -52 N HETATM 2 CA MSE A 524 25.461 12.000 -12.923 1.00 25.48 C ANISOU 2 CA MSE A 524 2128 5006 2548 888 809 1903 C HETATM 3 C MSE A 524 26.496 12.862 -13.656 1.00 17.80 C ANISOU 3 C MSE A 524 2302 2829 1632 331 -46 590 C HETATM 4 O MSE A 524 27.659 12.883 -13.204 1.00 24.32 O ANISOU 4 O MSE A 524 2814 4145 2280 -343 -821 1294 O