HEADER DNA BINDING PROTEIN 15-MAY-06 2CMX OBSLTE 06-MAY-08 2CMX 2VQC TITLE STRUCTURE OF A DNA BINDING WINGED-HELIX PROTEIN, F-112, TITLE 2 FROM SULFOLOBUS SPINDLE-SHAPED VIRUS 1. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL 13.2 KDA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ORF F-112, F112; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS VIRUS-LIKE PARTICLE SSV1; SOURCE 3 ORGANISM_COMMON: SSV1; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PEXP14- SSV1 F112 KEYWDS SULFOLOBUS SPINDLE VIRUS, THERMOPHILIC PROTEIN, KEYWDS 2 HYPOTHETICAL PROTEIN, SSV, WINGED-HELIX, CRENARCHAEAL EXPDTA X-RAY DIFFRACTION AUTHOR S.MENON,P.KRAFT,G.J.CORN,M.YOUNG,C.M.LAWRENCE REVDAT 3 06-MAY-08 2CMX 1 OBSLTE REVDAT 2 07-JUN-06 2CMX 1 AUTHOR JRNL SSBOND REVDAT 1 01-JUN-06 2CMX 0 JRNL AUTH S.MENON,P.KRAFT,G.J.CORN,M.YOUNG,C.M.LAWRENCE JRNL TITL STRUCTURE OF A DNA BINDING WINGED-HELIX PROTEIN, JRNL TITL 2 F-112, FROM SULFOLOBUS SPINDLE-SHAPED VIRUS 1. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 4133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 235 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 296 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 17 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 ALL ATOMS : 607 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.242 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.361 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 593 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 548 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 796 ; 0.923 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1287 ; 0.682 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 69 ; 4.165 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 27 ;30.633 ;24.815 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 123 ;12.020 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;17.348 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 88 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 626 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 112 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 112 ; 0.178 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 519 ; 0.148 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 288 ; 0.166 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 315 ; 0.080 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 20 ; 0.121 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 1 ; 0.625 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 24 ; 0.129 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.115 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 460 ; 0.306 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 141 ; 0.046 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 568 ; 0.387 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 288 ; 0.667 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 228 ; 0.986 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 0 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 14 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0594 27.6972 10.0265 REMARK 3 T TENSOR REMARK 3 T11: 0.0180 T22: 0.0916 REMARK 3 T33: 0.0986 T12: -0.0331 REMARK 3 T13: -0.0629 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 20.4345 L22: 57.4117 REMARK 3 L33: 22.7477 L12: 7.8620 REMARK 3 L13: 8.3219 L23: 8.2468 REMARK 3 S TENSOR REMARK 3 S11: 0.3180 S12: 0.0004 S13: -0.3899 REMARK 3 S21: -0.4792 S22: -0.4181 S23: 2.4629 REMARK 3 S31: 1.1153 S32: -0.6488 S33: 0.1001 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 18 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9289 31.1551 14.0880 REMARK 3 T TENSOR REMARK 3 T11: -0.0087 T22: 0.1576 REMARK 3 T33: 0.0117 T12: 0.0602 REMARK 3 T13: 0.0943 T23: 0.1364 REMARK 3 L TENSOR REMARK 3 L11: 42.6762 L22: 49.7622 REMARK 3 L33: 22.6668 L12: 30.7014 REMARK 3 L13: 19.1788 L23: 19.8412 REMARK 3 S TENSOR REMARK 3 S11: -0.0935 S12: -2.3763 S13: -0.6202 REMARK 3 S21: 0.7836 S22: -0.0682 S23: 0.0833 REMARK 3 S31: 0.7768 S32: -1.3974 S33: 0.1617 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 22 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9025 35.6217 16.0181 REMARK 3 T TENSOR REMARK 3 T11: 0.1193 T22: 0.0550 REMARK 3 T33: -0.0365 T12: 0.0207 REMARK 3 T13: 0.0534 T23: 0.0492 REMARK 3 L TENSOR REMARK 3 L11: 18.6670 L22: 42.4153 REMARK 3 L33: 9.4196 L12: -9.9397 REMARK 3 L13: 9.9288 L23: 7.1081 REMARK 3 S TENSOR REMARK 3 S11: -0.1595 S12: -0.8726 S13: 0.1352 REMARK 3 S21: 1.4842 S22: 0.4268 S23: 0.1518 REMARK 3 S31: 0.4233 S32: 0.2800 S33: -0.2673 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 26 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7969 39.0837 17.8849 REMARK 3 T TENSOR REMARK 3 T11: 0.1289 T22: 0.1427 REMARK 3 T33: 0.1977 T12: 0.1110 REMARK 3 T13: -0.1140 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 25.6640 L22: 45.0534 REMARK 3 L33: 29.1903 L12: 9.6917 REMARK 3 L13: 5.2962 L23: 13.6446 REMARK 3 S TENSOR REMARK 3 S11: -0.6705 S12: -1.4059 S13: -0.5206 REMARK 3 S21: 2.2818 S22: 1.1624 S23: -0.6554 REMARK 3 S31: -0.6024 S32: 0.7198 S33: -0.4919 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 31 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5521 40.5329 10.8135 REMARK 3 T TENSOR REMARK 3 T11: 0.1127 T22: 0.2440 REMARK 3 T33: 0.2503 T12: -0.0321 REMARK 3 T13: 0.0178 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.7557 L22: 12.3989 REMARK 3 L33: 39.3579 L12: 2.0734 REMARK 3 L13: 4.6449 L23: 21.2602 REMARK 3 S TENSOR REMARK 3 S11: -0.2429 S12: 0.3183 S13: 0.3161 REMARK 3 S21: -0.3124 S22: 0.6423 S23: -0.9061 REMARK 3 S31: -0.4986 S32: 2.1921 S33: -0.3994 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 36 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0760 33.3608 5.1962 REMARK 3 T TENSOR REMARK 3 T11: 0.0802 T22: 0.1210 REMARK 3 T33: -0.0500 T12: 0.0126 REMARK 3 T13: 0.0114 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 12.5992 L22: 27.5463 REMARK 3 L33: 6.6279 L12: -1.7452 REMARK 3 L13: -1.2335 L23: -13.1586 REMARK 3 S TENSOR REMARK 3 S11: 0.0625 S12: 0.5700 S13: 0.7594 REMARK 3 S21: -0.5631 S22: -0.1746 S23: -0.3082 REMARK 3 S31: 0.2189 S32: 0.1403 S33: 0.1121 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 41 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2425 26.7090 8.7057 REMARK 3 T TENSOR REMARK 3 T11: -0.0226 T22: 0.0234 REMARK 3 T33: -0.0983 T12: 0.0173 REMARK 3 T13: 0.0420 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 12.2454 L22: 26.7784 REMARK 3 L33: 14.7917 L12: 3.0990 REMARK 3 L13: 2.7234 L23: 9.7996 REMARK 3 S TENSOR REMARK 3 S11: 0.2159 S12: -0.4284 S13: -0.3337 REMARK 3 S21: 0.6233 S22: 0.1374 S23: -0.9352 REMARK 3 S31: 0.9100 S32: 0.1413 S33: -0.3533 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2410 27.8377 0.0199 REMARK 3 T TENSOR REMARK 3 T11: -0.0009 T22: -0.0072 REMARK 3 T33: -0.0375 T12: 0.0007 REMARK 3 T13: -0.0503 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 14.7172 L22: 29.8080 REMARK 3 L33: 30.2324 L12: -19.6425 REMARK 3 L13: -9.0038 L23: 2.5934 REMARK 3 S TENSOR REMARK 3 S11: 0.4127 S12: -0.0665 S13: -0.9424 REMARK 3 S21: 0.0726 S22: -0.6991 S23: 0.9689 REMARK 3 S31: -0.2028 S32: -0.1293 S33: 0.2864 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 49 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7063 32.3752 2.7628 REMARK 3 T TENSOR REMARK 3 T11: 0.0217 T22: -0.0108 REMARK 3 T33: -0.0805 T12: 0.0169 REMARK 3 T13: -0.0065 T23: 0.0377 REMARK 3 L TENSOR REMARK 3 L11: 27.9210 L22: 24.9401 REMARK 3 L33: 14.6935 L12: -12.4986 REMARK 3 L13: 1.5074 L23: 6.2601 REMARK 3 S TENSOR REMARK 3 S11: -0.1603 S12: 0.9271 S13: 0.7008 REMARK 3 S21: -1.0581 S22: -0.1315 S23: 0.1031 REMARK 3 S31: 0.2106 S32: 0.0223 S33: 0.2918 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5713 36.7220 5.6537 REMARK 3 T TENSOR REMARK 3 T11: 0.0086 T22: -0.0895 REMARK 3 T33: -0.0381 T12: 0.0639 REMARK 3 T13: -0.0103 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 36.2346 L22: 28.3510 REMARK 3 L33: 34.4466 L12: 0.6387 REMARK 3 L13: -12.4086 L23: -8.5056 REMARK 3 S TENSOR REMARK 3 S11: -0.0589 S12: 1.0795 S13: -0.8374 REMARK 3 S21: -1.5818 S22: -0.3227 S23: 0.5566 REMARK 3 S31: 0.5266 S32: -0.6922 S33: 0.3816 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 57 REMARK 3 ORIGIN FOR THE GROUP (A): 3.8180 41.4088 9.8478 REMARK 3 T TENSOR REMARK 3 T11: 0.0343 T22: 0.0102 REMARK 3 T33: 0.0966 T12: 0.0218 REMARK 3 T13: 0.0039 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 21.2172 L22: 33.4900 REMARK 3 L33: 32.8285 L12: 9.8800 REMARK 3 L13: -5.0360 L23: 27.8850 REMARK 3 S TENSOR REMARK 3 S11: -0.9129 S12: 0.3685 S13: 0.2360 REMARK 3 S21: -1.1077 S22: 0.7648 S23: -0.7107 REMARK 3 S31: -1.5369 S32: 1.1084 S33: 0.1481 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 62 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5465 45.9648 14.2541 REMARK 3 T TENSOR REMARK 3 T11: -0.0756 T22: -0.1293 REMARK 3 T33: 0.0565 T12: 0.0713 REMARK 3 T13: 0.0763 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 30.3591 L22: 45.7475 REMARK 3 L33: 18.4230 L12: 18.6259 REMARK 3 L13: 10.3914 L23: 14.5771 REMARK 3 S TENSOR REMARK 3 S11: 0.4844 S12: -0.5055 S13: 0.7896 REMARK 3 S21: 0.7023 S22: -0.9185 S23: 1.3741 REMARK 3 S31: 0.4961 S32: 0.0473 S33: 0.4341 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 63 A 67 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9821 47.3610 10.5109 REMARK 3 T TENSOR REMARK 3 T11: 0.1337 T22: -0.0878 REMARK 3 T33: 0.2520 T12: -0.0062 REMARK 3 T13: -0.0111 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 17.8007 L22: 3.0456 REMARK 3 L33: 82.8492 L12: -7.0908 REMARK 3 L13: -7.1586 L23: -1.3530 REMARK 3 S TENSOR REMARK 3 S11: 0.5281 S12: 0.5713 S13: -0.0682 REMARK 3 S21: 0.6048 S22: -0.2263 S23: -1.0689 REMARK 3 S31: -0.6281 S32: 0.6828 S33: -0.3018 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 72 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5234 44.4157 -1.7774 REMARK 3 T TENSOR REMARK 3 T11: 0.9271 T22: 0.6409 REMARK 3 T33: 0.3275 T12: -0.0475 REMARK 3 T13: 0.2399 T23: 0.4089 REMARK 3 L TENSOR REMARK 3 L11: 43.0197 L22: 88.8264 REMARK 3 L33: 34.9574 L12: -17.5736 REMARK 3 L13: 30.1035 L23: 21.3815 REMARK 3 S TENSOR REMARK 3 S11: -0.1969 S12: 3.3339 S13: 1.0185 REMARK 3 S21: -3.0548 S22: -0.9842 S23: 0.6070 REMARK 3 S31: -2.0445 S32: 2.3047 S33: 1.1811 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 73 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9680 45.0751 10.8772 REMARK 3 T TENSOR REMARK 3 T11: -0.1565 T22: -0.1949 REMARK 3 T33: 0.0466 T12: 0.0205 REMARK 3 T13: -0.0144 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 7.5185 L22: 16.0505 REMARK 3 L33: 42.6135 L12: -1.5928 REMARK 3 L13: -8.2568 L23: 13.7661 REMARK 3 S TENSOR REMARK 3 S11: 0.1094 S12: 0.1586 S13: 0.9628 REMARK 3 S21: -0.6429 S22: 0.0033 S23: -0.4148 REMARK 3 S31: -0.5530 S32: 1.0385 S33: -0.1127 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. TLS MOTION DETERMINATION (TLSMD) SERVER WAS REMARK 3 USED TO DETERMINE THE OPTIMAL NUMBER OF TLS GROUPS USED IN REMARK 3 FINAL REFINEMENT (PAINTER & MERRITT,2005, ACTA CRYST. D61, REMARK 3 465-471). REMARK 4 REMARK 4 2CMX COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006 REMARK 4 REMARK 4 THIS IS THE REMEDIATED VERSION OF THIS PDB ENTRY. REMARK 4 REMEDIATED DATA FILE REVISION 3.102 (2007-05-31) REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI. REMARK 100 THE EBI ID CODE IS EBI-28704. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-2005 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979180, 0.979320, 0891940 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4411 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.11000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 12.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOR DIFFUSION IN 0.1 REMARK 280 M MES (PH 6.0). QUICK SOAK IN MOTHER LIQUOR CONTAINING 25% REMARK 280 GLYCEROL AS CRYOPROTECTANT. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 2/3+X,1/3+Y,1/3+Z REMARK 290 5555 2/3-Y,1/3+X-Y,1/3+Z REMARK 290 6555 2/3-X+Y,1/3-X,1/3+Z REMARK 290 7555 1/3+X,2/3+Y,2/3+Z REMARK 290 8555 1/3-Y,2/3+X-Y,2/3+Z REMARK 290 9555 1/3-X+Y,2/3-X,2/3+Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.85800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.32143 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 11.49700 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 43.85800 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 25.32143 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 11.49700 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 43.85800 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 25.32143 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 11.49700 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.64286 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 22.99400 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 50.64286 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 22.99400 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 50.64286 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 22.99400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 ALA A 8 REMARK 465 GLN A 9 REMARK 465 GLN A 80 REMARK 465 GLU A 81 REMARK 465 GLN A 82 REMARK 465 LYS A 83 REMARK 465 GLU A 84 REMARK 465 GLU A 85 REMARK 465 GLN A 86 REMARK 465 LYS A 87 REMARK 465 GLN A 88 REMARK 465 GLU A 89 REMARK 465 GLN A 90 REMARK 465 THR A 91 REMARK 465 GLN A 92 REMARK 465 ASP A 93 REMARK 465 ASN A 94 REMARK 465 ILE A 95 REMARK 465 ALA A 96 REMARK 465 LYS A 97 REMARK 465 ILE A 98 REMARK 465 PHE A 99 REMARK 465 ASP A 100 REMARK 465 ALA A 101 REMARK 465 GLN A 102 REMARK 465 PRO A 103 REMARK 465 ALA A 104 REMARK 465 ASN A 105 REMARK 465 PHE A 106 REMARK 465 GLU A 107 REMARK 465 GLN A 108 REMARK 465 THR A 109 REMARK 465 ASP A 110 REMARK 465 GLN A 111 REMARK 465 GLY A 112 REMARK 465 PHE A 113 REMARK 465 ILE A 114 REMARK 465 LYS A 115 REMARK 465 ALA A 116 REMARK 465 LYS A 117 REMARK 465 GLN A 118 DBREF 2CMX A 8 118 UNP P20220 Y13K_SSV1 2 112 SEQRES 1 A 118 MSE HIS HIS HIS HIS HIS HIS ALA GLN THR LEU ASN SER SEQRES 2 A 118 TYR LYS MSE ALA GLU ILE MSE TYR LYS ILE LEU GLU LYS SEQRES 3 A 118 LYS GLY GLU LEU THR LEU GLU ASP ILE LEU ALA GLN PHE SEQRES 4 A 118 GLU ILE SER VAL PRO SER ALA TYR ASN ILE GLN ARG ALA SEQRES 5 A 118 LEU LYS ALA ILE CYS GLU ARG HIS PRO ASP GLU CYS GLU SEQRES 6 A 118 VAL GLN TYR LYS ASN ARG LYS THR THR PHE LYS TRP ILE SEQRES 7 A 118 LYS GLN GLU GLN LYS GLU GLU GLN LYS GLN GLU GLN THR SEQRES 8 A 118 GLN ASP ASN ILE ALA LYS ILE PHE ASP ALA GLN PRO ALA SEQRES 9 A 118 ASN PHE GLU GLN THR ASP GLN GLY PHE ILE LYS ALA LYS SEQRES 10 A 118 GLN MODRES 2CMX MSE A 16 MET SELENOMETHIONINE MODRES 2CMX MSE A 20 MET SELENOMETHIONINE HET MSE A 16 8 HET MSE A 20 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 HOH *25(H2 O) HELIX 1 1 ASN A 12 GLY A 28 1 17 HELIX 2 2 THR A 31 GLU A 40 1 10 HELIX 3 3 SER A 42 HIS A 60 1 19 SHEET 1 AA 3 GLU A 29 LEU A 30 0 SHEET 2 AA 3 THR A 73 TRP A 77 -1 O PHE A 75 N LEU A 30 SHEET 3 AA 3 CYS A 64 TYR A 68 -1 O GLU A 65 N LYS A 76 SSBOND 1 CYS A 57 CYS A 64 LINK C LYS A 15 N MSE A 16 LINK C MSE A 16 N ALA A 17 LINK C ILE A 19 N MSE A 20 LINK C MSE A 20 N TYR A 21 CRYST1 87.716 87.716 34.491 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011400 0.006582 0.000000 0.00000 SCALE2 0.000000 0.013164 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028993 0.00000