HEADER TRANSFERASE 23-MAY-06 2CNT TITLE RIMI - RIBOSOMAL S18 N-ALPHA-PROTEIN ACETYLTRANSFERASE IN COMPLEX WITH TITLE 2 COENZYMEA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MODIFICATION OF 30S RIBOSOMAL SUBUNIT PROTEIN S18; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: RIBOSOMAL-N-ALPHA-ACETYLTRANSFERASE; COMPND 5 EC: 2.3.1.128; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 99287; SOURCE 4 STRAIN: LT2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS N-ALPHA ACETYLATION, GCN5-N-ACETYLTRANSFERASE, RIBOSOMAL PROTEIN, KEYWDS 2 ACETYLTRANSFERASE, GNAT, TRANSFERASE, ACYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,D.C.BAREICH,M.YU,J.S.BLANCHARD REVDAT 6 20-JUN-18 2CNT 1 JRNL REVDAT 5 13-JUL-11 2CNT 1 VERSN REVDAT 4 24-FEB-09 2CNT 1 VERSN REVDAT 3 30-SEP-08 2CNT 1 JRNL REVDAT 2 15-JUL-08 2CNT 1 VERSN JRNL REVDAT 1 19-JUN-07 2CNT 0 JRNL AUTH M.W.VETTING,D.C.BAREICH,M.YU,J.S.BLANCHARD JRNL TITL CRYSTAL STRUCTURE OF RIMI FROM SALMONELLA TYPHIMURIUM LT2, JRNL TITL 2 THE GNAT RESPONSIBLE FOR N{ALPHA}- ACETYLATION OF RIBOSOMAL JRNL TITL 3 PROTEIN S18. JRNL REF PROTEIN SCI. V. 17 1781 2008 JRNL REFN ISSN 0961-8368 JRNL PMID 18596200 JRNL DOI 10.1110/PS.035899.108 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 113.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 39657 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2108 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2858 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 155 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4808 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 221 REMARK 3 SOLVENT ATOMS : 232 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.241 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.198 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.276 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5131 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6993 ; 1.600 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 600 ; 6.396 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 240 ;34.870 ;23.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 820 ;15.879 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;17.883 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 760 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3816 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2187 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3423 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 338 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 71 ; 0.231 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.136 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3105 ; 0.690 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4831 ; 1.219 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2336 ; 2.079 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2162 ; 3.374 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): -5.9950 45.3290 49.4770 REMARK 3 T TENSOR REMARK 3 T11: -0.1054 T22: 0.1137 REMARK 3 T33: -0.2366 T12: 0.0077 REMARK 3 T13: 0.0479 T23: 0.0880 REMARK 3 L TENSOR REMARK 3 L11: 4.3540 L22: 1.4706 REMARK 3 L33: 0.8247 L12: -1.1838 REMARK 3 L13: -0.0152 L23: 0.2489 REMARK 3 S TENSOR REMARK 3 S11: -0.1510 S12: -0.5994 S13: -0.2102 REMARK 3 S21: 0.1824 S22: 0.1692 S23: 0.0653 REMARK 3 S31: 0.0976 S32: -0.0380 S33: -0.0182 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 151 REMARK 3 ORIGIN FOR THE GROUP (A): 42.0100 38.1550 9.3240 REMARK 3 T TENSOR REMARK 3 T11: -0.1567 T22: -0.1224 REMARK 3 T33: -0.2163 T12: 0.0401 REMARK 3 T13: 0.0134 T23: -0.0498 REMARK 3 L TENSOR REMARK 3 L11: 2.8616 L22: 1.7728 REMARK 3 L33: 1.9762 L12: 0.2158 REMARK 3 L13: 0.7280 L23: 0.1160 REMARK 3 S TENSOR REMARK 3 S11: -0.1402 S12: -0.1360 S13: 0.0890 REMARK 3 S21: 0.0332 S22: 0.0171 S23: 0.1248 REMARK 3 S31: -0.1270 S32: -0.2102 S33: 0.1231 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 151 REMARK 3 ORIGIN FOR THE GROUP (A): 28.6080 51.6000 38.1510 REMARK 3 T TENSOR REMARK 3 T11: -0.1696 T22: -0.1141 REMARK 3 T33: -0.2381 T12: 0.0529 REMARK 3 T13: 0.0152 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 1.9526 L22: 1.9166 REMARK 3 L33: 2.7591 L12: 0.2080 REMARK 3 L13: 0.2556 L23: 0.5959 REMARK 3 S TENSOR REMARK 3 S11: -0.0718 S12: 0.0130 S13: -0.0929 REMARK 3 S21: 0.0397 S22: 0.1211 S23: -0.1556 REMARK 3 S31: -0.0313 S32: 0.1083 S33: -0.0493 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 151 REMARK 3 ORIGIN FOR THE GROUP (A): 3.9480 35.4410 15.0720 REMARK 3 T TENSOR REMARK 3 T11: -0.1031 T22: -0.0620 REMARK 3 T33: -0.1575 T12: -0.0647 REMARK 3 T13: 0.0049 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 2.2723 L22: 1.7675 REMARK 3 L33: 3.6541 L12: 0.0732 REMARK 3 L13: -0.4028 L23: -0.6114 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: 0.0901 S13: -0.2734 REMARK 3 S21: -0.1628 S22: 0.0868 S23: 0.0724 REMARK 3 S31: 0.3821 S32: -0.3227 S33: -0.1124 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2CNT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1290028862. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 93.0 REMARK 200 PH : 5.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200B REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC CONFOCAL MAXFLUX OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39657 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SOLVE RESOLVE ARP WARP AMORE CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2-2.8 M (NH4)2SO4, 100 MM MES PH 4.5 REMARK 280 -5.5, PH 5.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE PROTEIN IS A MONOMER IN SOLUTION. THE OBSERVED TRIMERS REMARK 400 IN THE UNIT CELL ARE NON-PHYSIOLOGICAL. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 152 REMARK 465 HIS A 153 REMARK 465 HIS A 154 REMARK 465 HIS A 155 REMARK 465 HIS A 156 REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 465 HIS A 159 REMARK 465 HIS A 160 REMARK 465 HIS B 152 REMARK 465 HIS B 153 REMARK 465 HIS B 154 REMARK 465 HIS B 155 REMARK 465 HIS B 156 REMARK 465 HIS B 157 REMARK 465 HIS B 158 REMARK 465 HIS B 159 REMARK 465 HIS B 160 REMARK 465 HIS C 152 REMARK 465 HIS C 153 REMARK 465 HIS C 154 REMARK 465 HIS C 155 REMARK 465 HIS C 156 REMARK 465 HIS C 157 REMARK 465 HIS C 158 REMARK 465 HIS C 159 REMARK 465 HIS C 160 REMARK 465 HIS D 152 REMARK 465 HIS D 153 REMARK 465 HIS D 154 REMARK 465 HIS D 155 REMARK 465 HIS D 156 REMARK 465 HIS D 157 REMARK 465 HIS D 158 REMARK 465 HIS D 159 REMARK 465 HIS D 160 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 107 OE2 GLU A 137 2.15 REMARK 500 NH2 ARG D 95 O HOH D 2036 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS C 151 C HIS C 151 O -0.159 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 48 -110.26 60.70 REMARK 500 LEU A 61 -123.21 57.91 REMARK 500 ASN B 35 57.46 -91.27 REMARK 500 ARG B 39 -0.33 81.29 REMARK 500 ASP B 48 -110.08 58.15 REMARK 500 LEU B 61 -125.50 61.42 REMARK 500 ARG B 77 32.15 70.41 REMARK 500 ARG C 39 -2.35 82.87 REMARK 500 LEU C 41 78.40 -100.16 REMARK 500 ASP C 48 -123.67 65.79 REMARK 500 LEU C 61 -123.94 61.12 REMARK 500 ARG D 39 -0.74 76.16 REMARK 500 ASP D 48 -121.35 56.19 REMARK 500 LEU D 61 -121.20 54.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A1152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA B1152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA C1152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA D1152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C1153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D1153 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CNM RELATED DB: PDB REMARK 900 RIMI - RIBOSOMAL S18 N-ALPHA-PROTEIN ACETYLTRANSFERASE IN COMPLEX REMARK 900 WITH A BISUBSTRATE INHIBITOR (CTERM-ARG-ARG-PHE-TYR -ARG-ALA-N- REMARK 900 ALPHA-ACETYL-S-COA). REMARK 900 RELATED ID: 2CNS RELATED DB: PDB REMARK 900 RIMI - RIBOSOMAL S18 N-ALPHA-PROTEIN ACETYLTRANSFERASE IN COMPLEX REMARK 900 WITH ACETYLCO DBREF 2CNT A 1 148 UNP Q8ZJW4 Q8ZJW4_SALTY 1 148 DBREF 2CNT A 149 160 PDB 2CNT 2CNT 149 160 DBREF 2CNT B 1 148 UNP Q8ZJW4 Q8ZJW4_SALTY 1 148 DBREF 2CNT B 149 160 PDB 2CNT 2CNT 149 160 DBREF 2CNT C 1 148 UNP Q8ZJW4 Q8ZJW4_SALTY 1 148 DBREF 2CNT C 149 160 PDB 2CNT 2CNT 149 160 DBREF 2CNT D 1 148 UNP Q8ZJW4 Q8ZJW4_SALTY 1 148 DBREF 2CNT D 149 160 PDB 2CNT 2CNT 149 160 SEQRES 1 A 160 MET ASN THR ILE SER ILE LEU SER THR THR ASP LEU PRO SEQRES 2 A 160 ALA ALA TRP GLN ILE GLU GLN ARG ALA HIS ALA PHE PRO SEQRES 3 A 160 TRP SER GLU LYS THR PHE PHE GLY ASN GLN GLY GLU ARG SEQRES 4 A 160 TYR LEU ASN LEU LYS LEU THR ALA ASP ASP ARG MET ALA SEQRES 5 A 160 ALA PHE ALA ILE THR GLN VAL VAL LEU ASP GLU ALA THR SEQRES 6 A 160 LEU PHE ASN ILE ALA VAL ASP PRO ASP PHE GLN ARG ARG SEQRES 7 A 160 GLY LEU GLY ARG MET LEU LEU GLU HIS LEU ILE ASP GLU SEQRES 8 A 160 LEU GLU THR ARG GLY VAL VAL THR LEU TRP LEU GLU VAL SEQRES 9 A 160 ARG ALA SER ASN ALA ALA ALA ILE ALA LEU TYR GLU SER SEQRES 10 A 160 LEU GLY PHE ASN GLU ALA THR ILE ARG ARG ASN TYR TYR SEQRES 11 A 160 PRO THR ALA GLN GLY HIS GLU ASP ALA ILE ILE MET ALA SEQRES 12 A 160 LEU PRO ILE SER MET LYS LEU HIS HIS HIS HIS HIS HIS SEQRES 13 A 160 HIS HIS HIS HIS SEQRES 1 B 160 MET ASN THR ILE SER ILE LEU SER THR THR ASP LEU PRO SEQRES 2 B 160 ALA ALA TRP GLN ILE GLU GLN ARG ALA HIS ALA PHE PRO SEQRES 3 B 160 TRP SER GLU LYS THR PHE PHE GLY ASN GLN GLY GLU ARG SEQRES 4 B 160 TYR LEU ASN LEU LYS LEU THR ALA ASP ASP ARG MET ALA SEQRES 5 B 160 ALA PHE ALA ILE THR GLN VAL VAL LEU ASP GLU ALA THR SEQRES 6 B 160 LEU PHE ASN ILE ALA VAL ASP PRO ASP PHE GLN ARG ARG SEQRES 7 B 160 GLY LEU GLY ARG MET LEU LEU GLU HIS LEU ILE ASP GLU SEQRES 8 B 160 LEU GLU THR ARG GLY VAL VAL THR LEU TRP LEU GLU VAL SEQRES 9 B 160 ARG ALA SER ASN ALA ALA ALA ILE ALA LEU TYR GLU SER SEQRES 10 B 160 LEU GLY PHE ASN GLU ALA THR ILE ARG ARG ASN TYR TYR SEQRES 11 B 160 PRO THR ALA GLN GLY HIS GLU ASP ALA ILE ILE MET ALA SEQRES 12 B 160 LEU PRO ILE SER MET LYS LEU HIS HIS HIS HIS HIS HIS SEQRES 13 B 160 HIS HIS HIS HIS SEQRES 1 C 160 MET ASN THR ILE SER ILE LEU SER THR THR ASP LEU PRO SEQRES 2 C 160 ALA ALA TRP GLN ILE GLU GLN ARG ALA HIS ALA PHE PRO SEQRES 3 C 160 TRP SER GLU LYS THR PHE PHE GLY ASN GLN GLY GLU ARG SEQRES 4 C 160 TYR LEU ASN LEU LYS LEU THR ALA ASP ASP ARG MET ALA SEQRES 5 C 160 ALA PHE ALA ILE THR GLN VAL VAL LEU ASP GLU ALA THR SEQRES 6 C 160 LEU PHE ASN ILE ALA VAL ASP PRO ASP PHE GLN ARG ARG SEQRES 7 C 160 GLY LEU GLY ARG MET LEU LEU GLU HIS LEU ILE ASP GLU SEQRES 8 C 160 LEU GLU THR ARG GLY VAL VAL THR LEU TRP LEU GLU VAL SEQRES 9 C 160 ARG ALA SER ASN ALA ALA ALA ILE ALA LEU TYR GLU SER SEQRES 10 C 160 LEU GLY PHE ASN GLU ALA THR ILE ARG ARG ASN TYR TYR SEQRES 11 C 160 PRO THR ALA GLN GLY HIS GLU ASP ALA ILE ILE MET ALA SEQRES 12 C 160 LEU PRO ILE SER MET LYS LEU HIS HIS HIS HIS HIS HIS SEQRES 13 C 160 HIS HIS HIS HIS SEQRES 1 D 160 MET ASN THR ILE SER ILE LEU SER THR THR ASP LEU PRO SEQRES 2 D 160 ALA ALA TRP GLN ILE GLU GLN ARG ALA HIS ALA PHE PRO SEQRES 3 D 160 TRP SER GLU LYS THR PHE PHE GLY ASN GLN GLY GLU ARG SEQRES 4 D 160 TYR LEU ASN LEU LYS LEU THR ALA ASP ASP ARG MET ALA SEQRES 5 D 160 ALA PHE ALA ILE THR GLN VAL VAL LEU ASP GLU ALA THR SEQRES 6 D 160 LEU PHE ASN ILE ALA VAL ASP PRO ASP PHE GLN ARG ARG SEQRES 7 D 160 GLY LEU GLY ARG MET LEU LEU GLU HIS LEU ILE ASP GLU SEQRES 8 D 160 LEU GLU THR ARG GLY VAL VAL THR LEU TRP LEU GLU VAL SEQRES 9 D 160 ARG ALA SER ASN ALA ALA ALA ILE ALA LEU TYR GLU SER SEQRES 10 D 160 LEU GLY PHE ASN GLU ALA THR ILE ARG ARG ASN TYR TYR SEQRES 11 D 160 PRO THR ALA GLN GLY HIS GLU ASP ALA ILE ILE MET ALA SEQRES 12 D 160 LEU PRO ILE SER MET LYS LEU HIS HIS HIS HIS HIS HIS SEQRES 13 D 160 HIS HIS HIS HIS HET COA A1152 48 HET GOL A1153 6 HET COA B1152 48 HET GOL B1153 6 HET SO4 B1154 5 HET COA C1152 48 HET GOL C1153 6 HET COA D1152 48 HET GOL D1153 6 HETNAM COA COENZYME A HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 COA 4(C21 H36 N7 O16 P3 S) FORMUL 6 GOL 4(C3 H8 O3) FORMUL 9 SO4 O4 S 2- FORMUL 14 HOH *232(H2 O) HELIX 1 1 SER A 8 THR A 10 5 3 HELIX 2 2 ASP A 11 HIS A 23 1 13 HELIX 3 3 SER A 28 ASN A 35 1 8 HELIX 4 4 PRO A 73 GLN A 76 5 4 HELIX 5 5 GLY A 79 ARG A 95 1 17 HELIX 6 6 ASN A 108 GLY A 119 1 12 HELIX 7 7 SER B 8 THR B 10 5 3 HELIX 8 8 ASP B 11 HIS B 23 1 13 HELIX 9 9 SER B 28 ASN B 35 1 8 HELIX 10 10 PRO B 73 GLN B 76 5 4 HELIX 11 11 GLY B 79 ARG B 95 1 17 HELIX 12 12 ASN B 108 LEU B 118 1 11 HELIX 13 13 SER C 8 THR C 10 5 3 HELIX 14 14 ASP C 11 HIS C 23 1 13 HELIX 15 15 SER C 28 ASN C 35 1 8 HELIX 16 16 PRO C 73 GLN C 76 5 4 HELIX 17 17 GLY C 79 ARG C 95 1 17 HELIX 18 18 ASN C 108 LEU C 118 1 11 HELIX 19 19 SER D 8 THR D 10 5 3 HELIX 20 20 ASP D 11 HIS D 23 1 13 HELIX 21 21 SER D 28 ASN D 35 1 8 HELIX 22 22 PRO D 73 GLN D 76 5 4 HELIX 23 23 GLY D 79 ARG D 95 1 17 HELIX 24 24 ASN D 108 LEU D 118 1 11 SHEET 1 AA 7 ASN A 2 ILE A 6 0 SHEET 2 AA 7 LEU A 43 ALA A 47 -1 O LYS A 44 N SER A 5 SHEET 3 AA 7 ARG A 50 VAL A 60 -1 O ARG A 50 N ALA A 47 SHEET 4 AA 7 GLU A 63 VAL A 71 -1 O GLU A 63 N VAL A 60 SHEET 5 AA 7 THR A 99 ARG A 105 1 O THR A 99 N ALA A 64 SHEET 6 AA 7 GLY A 135 PRO A 145 -1 O ILE A 140 N VAL A 104 SHEET 7 AA 7 ASN A 121 THR A 132 -1 O ASN A 121 N ALA A 143 SHEET 1 BA 7 ASN B 2 ILE B 6 0 SHEET 2 BA 7 LEU B 43 ALA B 47 -1 O LYS B 44 N SER B 5 SHEET 3 BA 7 ARG B 50 VAL B 60 -1 O ARG B 50 N ALA B 47 SHEET 4 BA 7 GLU B 63 VAL B 71 -1 O GLU B 63 N VAL B 60 SHEET 5 BA 7 THR B 99 ARG B 105 1 O THR B 99 N ALA B 64 SHEET 6 BA 7 GLY B 135 PRO B 145 -1 O ILE B 140 N VAL B 104 SHEET 7 BA 7 ASN B 121 THR B 132 -1 O ASN B 121 N ALA B 143 SHEET 1 CA 7 ASN C 2 ILE C 6 0 SHEET 2 CA 7 LEU C 43 ALA C 47 -1 O LYS C 44 N SER C 5 SHEET 3 CA 7 ARG C 50 VAL C 60 -1 O ARG C 50 N ALA C 47 SHEET 4 CA 7 GLU C 63 VAL C 71 -1 O GLU C 63 N VAL C 60 SHEET 5 CA 7 THR C 99 ARG C 105 1 O THR C 99 N ALA C 64 SHEET 6 CA 7 GLY C 135 PRO C 145 -1 O ILE C 140 N VAL C 104 SHEET 7 CA 7 ASN C 121 THR C 132 -1 O ASN C 121 N ALA C 143 SHEET 1 DA 7 ASN D 2 ILE D 6 0 SHEET 2 DA 7 LEU D 43 ALA D 47 -1 O LYS D 44 N SER D 5 SHEET 3 DA 7 MET D 51 VAL D 60 -1 N ALA D 52 O LEU D 45 SHEET 4 DA 7 GLU D 63 VAL D 71 -1 O GLU D 63 N VAL D 60 SHEET 5 DA 7 THR D 99 ARG D 105 1 O THR D 99 N ALA D 64 SHEET 6 DA 7 GLY D 135 PRO D 145 -1 O ILE D 140 N VAL D 104 SHEET 7 DA 7 ASN D 121 THR D 132 -1 O ASN D 121 N ALA D 143 SITE 1 AC1 3 GLY B 135 HIS B 136 COA B1152 SITE 1 AC2 20 ALA A 22 HIS A 23 ILE A 69 ALA A 70 SITE 2 AC2 20 VAL A 71 GLN A 76 ARG A 77 ARG A 78 SITE 3 AC2 20 GLY A 79 LEU A 80 GLY A 81 ARG A 82 SITE 4 AC2 20 ASN A 108 ALA A 110 ALA A 111 LEU A 114 SITE 5 AC2 20 TYR A 115 GOL A1153 HOH A2030 HOH A2052 SITE 1 AC3 25 ALA B 22 HIS B 23 ILE B 69 ALA B 70 SITE 2 AC3 25 VAL B 71 GLN B 76 ARG B 77 ARG B 78 SITE 3 AC3 25 GLY B 79 LEU B 80 GLY B 81 ARG B 82 SITE 4 AC3 25 ASN B 108 ALA B 110 ALA B 111 LEU B 114 SITE 5 AC3 25 TYR B 115 GOL B1153 SO4 B1154 HOH B2036 SITE 6 AC3 25 HOH B2037 HOH B2052 HOH B2065 HOH B2066 SITE 7 AC3 25 HOH B2067 SITE 1 AC4 23 ALA C 22 HIS C 23 ILE C 69 ALA C 70 SITE 2 AC4 23 VAL C 71 GLN C 76 ARG C 77 ARG C 78 SITE 3 AC4 23 GLY C 79 LEU C 80 GLY C 81 ARG C 82 SITE 4 AC4 23 ASN C 108 ALA C 110 ALA C 111 ALA C 113 SITE 5 AC4 23 LEU C 114 TYR C 115 GOL C1153 HOH C2040 SITE 6 AC4 23 HOH C2057 HOH C2063 HOH C2064 SITE 1 AC5 19 ALA D 22 HIS D 23 ILE D 69 ALA D 70 SITE 2 AC5 19 VAL D 71 GLN D 76 ARG D 77 ARG D 78 SITE 3 AC5 19 GLY D 79 GLY D 81 ARG D 82 ASN D 108 SITE 4 AC5 19 ALA D 110 ALA D 111 ALA D 113 LEU D 114 SITE 5 AC5 19 TYR D 115 HOH D2048 HOH D2049 SITE 1 AC6 6 HIS A 23 ALA A 24 PHE A 25 ARG A 105 SITE 2 AC6 6 ASN A 108 COA A1152 SITE 1 AC7 8 HIS B 23 ALA B 24 PHE B 25 ARG B 105 SITE 2 AC7 8 ASN B 108 COA B1152 HOH B2065 LYS D 30 SITE 1 AC8 7 HIS C 23 ALA C 24 PHE C 25 ARG C 105 SITE 2 AC8 7 ASN C 108 COA C1152 HOH C2017 SITE 1 AC9 7 LYS B 30 HIS D 23 ALA D 24 PHE D 25 SITE 2 AC9 7 ARG D 105 ASN D 108 HOH D2049 CRYST1 126.926 126.926 113.859 90.00 90.00 120.00 P 3 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007879 0.004549 0.000000 0.00000 SCALE2 0.000000 0.009097 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008783 0.00000