data_2CO5 # _entry.id 2CO5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2CO5 PDBE EBI-28872 WWPDB D_1290028872 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CO5 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2006-05-25 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Larson, E.T.' 1 'Reiter, D.' 2 'Lawrence, C.M.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;A Winged-Helix Protein from Sulfolobus Turreted Icosahedral Virus Points Toward Stabilizing Disulfide Bonds in the Intracellular Proteins of a Hyperthermophilic Virus. ; Virology 368 249 ? 2007 VIRLAX US 0042-6822 0922 ? 17669459 10.1016/J.VIROL.2007.06.040 1 'The Structure of a Thermophilic Archaeal Virus Shows a Double-Stranded DNA Viral Capsid Type that Spans All Domains of Life' Proc.Natl.Acad.Sci.USA 101 7716 ? 2004 PNASA6 US 0027-8424 0040 ? 15123802 10.1073/PNAS.0401773101 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Larson, E.T.' 1 ? primary 'Eilers, B.' 2 ? primary 'Menon, S.' 3 ? primary 'Reiter, D.' 4 ? primary 'Ortmann, A.' 5 ? primary 'Young, M.J.' 6 ? primary 'Lawrence, C.M.' 7 ? 1 'Rice, G.' 8 ? 1 'Tang, L.' 9 ? 1 'Stedman, K.' 10 ? 1 'Roberto, F.' 11 ? 1 'Spuhler, J.' 12 ? 1 'Gillitzer, E.' 13 ? 1 'Johnson, J.E.' 14 ? 1 'Douglas, T.' 15 ? 1 'Young, M.' 16 ? # _cell.entry_id 2CO5 _cell.length_a 42.050 _cell.length_b 102.594 _cell.length_c 92.398 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CO5 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'VIRAL PROTEIN F93' 12000.183 2 ? ? ? ? 2 water nat water 18.015 69 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKIRKYMRINYYIILKVLVINGSRLEKKRLRSEILKRFDIDISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKE FEELHEFFKKIVCHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MKIRKYMRINYYIILKVLVINGSRLEKKRLRSEILKRFDIDISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKE FEELHEFFKKIVCHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 ILE n 1 4 ARG n 1 5 LYS n 1 6 TYR n 1 7 MET n 1 8 ARG n 1 9 ILE n 1 10 ASN n 1 11 TYR n 1 12 TYR n 1 13 ILE n 1 14 ILE n 1 15 LEU n 1 16 LYS n 1 17 VAL n 1 18 LEU n 1 19 VAL n 1 20 ILE n 1 21 ASN n 1 22 GLY n 1 23 SER n 1 24 ARG n 1 25 LEU n 1 26 GLU n 1 27 LYS n 1 28 LYS n 1 29 ARG n 1 30 LEU n 1 31 ARG n 1 32 SER n 1 33 GLU n 1 34 ILE n 1 35 LEU n 1 36 LYS n 1 37 ARG n 1 38 PHE n 1 39 ASP n 1 40 ILE n 1 41 ASP n 1 42 ILE n 1 43 SER n 1 44 ASP n 1 45 GLY n 1 46 VAL n 1 47 LEU n 1 48 TYR n 1 49 PRO n 1 50 LEU n 1 51 ILE n 1 52 ASP n 1 53 SER n 1 54 LEU n 1 55 ILE n 1 56 ASP n 1 57 ASP n 1 58 LYS n 1 59 ILE n 1 60 LEU n 1 61 ARG n 1 62 GLU n 1 63 GLU n 1 64 GLU n 1 65 ALA n 1 66 PRO n 1 67 ASP n 1 68 GLY n 1 69 LYS n 1 70 VAL n 1 71 LEU n 1 72 PHE n 1 73 LEU n 1 74 THR n 1 75 GLU n 1 76 LYS n 1 77 GLY n 1 78 MET n 1 79 LYS n 1 80 GLU n 1 81 PHE n 1 82 GLU n 1 83 GLU n 1 84 LEU n 1 85 HIS n 1 86 GLU n 1 87 PHE n 1 88 PHE n 1 89 LYS n 1 90 LYS n 1 91 ILE n 1 92 VAL n 1 93 CYS n 1 94 HIS n 1 95 HIS n 1 96 HIS n 1 97 HIS n 1 98 HIS n 1 99 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name STIV _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ISOLATE YNPRC179' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'SULFOLOBUS TURRETED ICOSAHEDRAL VIRUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 269145 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-CODON PLUS (RIL)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PEXP14-STIVF93 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ;STIV WAS ISOLATED FROM SULFOLOBUS SPECIES IN ACIDIC HOT SPRINGS (PH 2.9-3.9, 72-92 DEGREES C)IN THE RABBIT CREEK THERMAL AREA WITHIN MIDWAY GEYSER BASIN IN YELLOWSTONE NATIONAL PARK, USA. ; # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q6Q0J9_9VIRU _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q6Q0J9 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2CO5 A 1 ? 93 ? Q6Q0J9 1 ? 93 ? 1 93 2 1 2CO5 B 1 ? 93 ? Q6Q0J9 1 ? 93 ? 1 93 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2CO5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.1 _exptl_crystal.density_percent_sol 41 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.75 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;HANGING DROP VAPOR DIFFUSION, 9.0-10.5 MG/ML F93 IN 10 MM TRIS-HCL, PH 8.0, 50 MM NACL, 0.5 MM TCEP MIXED WITH BUFFER CONTAINING 0.1 M SODIUM ACETATE, PH 4.75-5.0, 0.1 M MAGNESIUM NITRATE HEXAHYDRATE, 16-20% PEG 20,000. ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2006-03-17 _diffrn_detector.details 'VERTICAL FOCUSING MIRROR, SINGLE CRYSTAL SI(311) BENT MONOCHROMATOR (HORIZONTAL FOCUSING)' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SIDE-SCATTERING CUBEROOT I- BEAM BENT SINGLE CRYSTAL, ASYMETRIC CUT 12.2 DEGS.' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98789 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-1 _diffrn_source.pdbx_wavelength 0.98789 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2CO5 _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 2.20 _reflns.number_obs 10466 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 33.00 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.1 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.28 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.34 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.20 _reflns_shell.pdbx_redundancy 7.3 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2CO5 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 9938 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 46.37 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 99.7 _refine.ls_R_factor_obs 0.192 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.190 _refine.ls_R_factor_R_free 0.232 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 508 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.941 _refine.B_iso_mean 42.80 _refine.aniso_B[1][1] 1.71000 _refine.aniso_B[2][2] -1.37000 _refine.aniso_B[3][3] -0.34000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. TLS MOTION DETERMINATION SERVER (J PAINTER & E A MERRITT (2006) J. APPL. CRYST. 39, 109-111) WAS USED FOR SELECTION OF OPTIMAL TLS GROUPS USED IN REFINEMENT. ; _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.304 _refine.pdbx_overall_ESU_R_Free 0.213 _refine.overall_SU_ML 0.170 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 13.322 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1570 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 69 _refine_hist.number_atoms_total 1639 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 46.37 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.022 ? 1629 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1216 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.991 1.999 ? 2179 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.789 3.001 ? 2957 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.135 5.000 ? 192 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.991 23.077 ? 78 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.796 15.000 ? 356 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.730 15.000 ? 15 'X-RAY DIFFRACTION' ? r_chiral_restr 0.061 0.200 ? 241 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1721 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 338 'X-RAY DIFFRACTION' ? r_nbd_refined 0.202 0.200 ? 338 'X-RAY DIFFRACTION' ? r_nbd_other 0.172 0.200 ? 1162 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.178 0.200 ? 781 'X-RAY DIFFRACTION' ? r_nbtor_other 0.082 0.200 ? 842 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.113 0.200 ? 74 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.104 0.200 ? 11 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.168 0.200 ? 38 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.155 0.200 ? 12 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.994 6.000 ? 1277 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.509 8.000 ? 1527 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 9.210 36.000 ? 813 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 11.446 54.000 ? 648 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.20 _refine_ls_shell.d_res_low 2.26 _refine_ls_shell.number_reflns_R_work 699 _refine_ls_shell.R_factor_R_work 0.2250 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2850 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 41 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2CO5 _struct.title 'F93 FROM STIV, a winged-helix DNA-binding protein' _struct.pdbx_descriptor 'VIRAL PROTEIN F93' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CO5 _struct_keywords.pdbx_keywords 'VIRAL PROTEIN/WINGED HELIX' _struct_keywords.text ;VIRAL PROTEIN-WINGED HELIX COMPLEX, WINGED HELIX, DNA-BINDING, HTH, WHTH, F93, DISULFIDE BOND, STIV, SULFOLOBUS TURRETED ICOSAHEDRAL VIRUS, VIRAL PROTEIN, VIRUS, ARCHAEA, CRENARCHAEA, ARCHAEAL VIRUS, CRENARCHAEAL VIRUS, THERMOPHILIC PROTEIN, THERMOPHILIC VIRUS, SULFOLOBUS, YELLOWSTONE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET A 7 ? ASN A 21 ? MET A 7 ASN A 21 1 ? 15 HELX_P HELX_P2 2 ARG A 29 ? ASP A 39 ? ARG A 29 ASP A 39 1 ? 11 HELX_P HELX_P3 3 SER A 43 ? ASP A 57 ? SER A 43 ASP A 57 1 ? 15 HELX_P HELX_P4 4 THR A 74 ? CYS A 93 ? THR A 74 CYS A 93 1 ? 20 HELX_P HELX_P5 5 ARG B 8 ? ASN B 21 ? ARG B 8 ASN B 21 1 ? 14 HELX_P HELX_P6 6 ARG B 29 ? ASP B 39 ? ARG B 29 ASP B 39 1 ? 11 HELX_P HELX_P7 7 SER B 43 ? ASP B 57 ? SER B 43 ASP B 57 1 ? 15 HELX_P HELX_P8 8 THR B 74 ? CYS B 93 ? THR B 74 CYS B 93 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 93 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 93 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 93 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.025 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 66 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 66 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 ASP _struct_mon_prot_cis.pdbx_label_seq_id_2 67 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ASP _struct_mon_prot_cis.pdbx_auth_seq_id_2 67 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 11.69 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 3 ? BA ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ARG A 24 ? GLU A 26 ? ARG A 24 GLU A 26 AA 2 VAL A 70 ? LEU A 73 ? VAL A 70 LEU A 73 AA 3 LEU A 60 ? GLU A 63 ? LEU A 60 GLU A 63 BA 1 ARG B 24 ? GLU B 26 ? ARG B 24 GLU B 26 BA 2 VAL B 70 ? LEU B 73 ? VAL B 70 LEU B 73 BA 3 LEU B 60 ? GLU B 63 ? LEU B 60 GLU B 63 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LEU A 25 ? N LEU A 25 O LEU A 71 ? O LEU A 71 AA 2 3 N PHE A 72 ? N PHE A 72 O ARG A 61 ? O ARG A 61 BA 1 2 N LEU B 25 ? N LEU B 25 O LEU B 71 ? O LEU B 71 BA 2 3 N PHE B 72 ? N PHE B 72 O ARG B 61 ? O ARG B 61 # _database_PDB_matrix.entry_id 2CO5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2CO5 _atom_sites.fract_transf_matrix[1][1] 0.023781 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009747 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010823 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 LYS 2 2 ? ? ? A . n A 1 3 ILE 3 3 ? ? ? A . n A 1 4 ARG 4 4 ? ? ? A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 TYR 6 6 6 TYR TYR A . n A 1 7 MET 7 7 7 MET MET A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 PRO 49 49 49 PRO PRO A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 PRO 66 66 66 PRO PRO A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 MET 78 78 78 MET MET A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 PHE 81 81 81 PHE PHE A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 HIS 85 85 85 HIS HIS A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 PHE 87 87 87 PHE PHE A . n A 1 88 PHE 88 88 88 PHE PHE A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 CYS 93 93 93 CYS CYS A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 HIS 95 95 95 HIS HIS A . n A 1 96 HIS 96 96 96 HIS HIS A . n A 1 97 HIS 97 97 ? ? ? A . n A 1 98 HIS 98 98 ? ? ? A . n A 1 99 HIS 99 99 ? ? ? A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 LYS 2 2 2 LYS LYS B . n B 1 3 ILE 3 3 3 ILE ILE B . n B 1 4 ARG 4 4 4 ARG ARG B . n B 1 5 LYS 5 5 5 LYS LYS B . n B 1 6 TYR 6 6 6 TYR TYR B . n B 1 7 MET 7 7 7 MET MET B . n B 1 8 ARG 8 8 8 ARG ARG B . n B 1 9 ILE 9 9 9 ILE ILE B . n B 1 10 ASN 10 10 10 ASN ASN B . n B 1 11 TYR 11 11 11 TYR TYR B . n B 1 12 TYR 12 12 12 TYR TYR B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 ILE 14 14 14 ILE ILE B . n B 1 15 LEU 15 15 15 LEU LEU B . n B 1 16 LYS 16 16 16 LYS LYS B . n B 1 17 VAL 17 17 17 VAL VAL B . n B 1 18 LEU 18 18 18 LEU LEU B . n B 1 19 VAL 19 19 19 VAL VAL B . n B 1 20 ILE 20 20 20 ILE ILE B . n B 1 21 ASN 21 21 21 ASN ASN B . n B 1 22 GLY 22 22 22 GLY GLY B . n B 1 23 SER 23 23 23 SER SER B . n B 1 24 ARG 24 24 24 ARG ARG B . n B 1 25 LEU 25 25 25 LEU LEU B . n B 1 26 GLU 26 26 26 GLU GLU B . n B 1 27 LYS 27 27 27 LYS LYS B . n B 1 28 LYS 28 28 28 LYS LYS B . n B 1 29 ARG 29 29 29 ARG ARG B . n B 1 30 LEU 30 30 30 LEU LEU B . n B 1 31 ARG 31 31 31 ARG ARG B . n B 1 32 SER 32 32 32 SER SER B . n B 1 33 GLU 33 33 33 GLU GLU B . n B 1 34 ILE 34 34 34 ILE ILE B . n B 1 35 LEU 35 35 35 LEU LEU B . n B 1 36 LYS 36 36 36 LYS LYS B . n B 1 37 ARG 37 37 37 ARG ARG B . n B 1 38 PHE 38 38 38 PHE PHE B . n B 1 39 ASP 39 39 39 ASP ASP B . n B 1 40 ILE 40 40 40 ILE ILE B . n B 1 41 ASP 41 41 41 ASP ASP B . n B 1 42 ILE 42 42 42 ILE ILE B . n B 1 43 SER 43 43 43 SER SER B . n B 1 44 ASP 44 44 44 ASP ASP B . n B 1 45 GLY 45 45 45 GLY GLY B . n B 1 46 VAL 46 46 46 VAL VAL B . n B 1 47 LEU 47 47 47 LEU LEU B . n B 1 48 TYR 48 48 48 TYR TYR B . n B 1 49 PRO 49 49 49 PRO PRO B . n B 1 50 LEU 50 50 50 LEU LEU B . n B 1 51 ILE 51 51 51 ILE ILE B . n B 1 52 ASP 52 52 52 ASP ASP B . n B 1 53 SER 53 53 53 SER SER B . n B 1 54 LEU 54 54 54 LEU LEU B . n B 1 55 ILE 55 55 55 ILE ILE B . n B 1 56 ASP 56 56 56 ASP ASP B . n B 1 57 ASP 57 57 57 ASP ASP B . n B 1 58 LYS 58 58 58 LYS LYS B . n B 1 59 ILE 59 59 59 ILE ILE B . n B 1 60 LEU 60 60 60 LEU LEU B . n B 1 61 ARG 61 61 61 ARG ARG B . n B 1 62 GLU 62 62 62 GLU GLU B . n B 1 63 GLU 63 63 63 GLU GLU B . n B 1 64 GLU 64 64 64 GLU GLU B . n B 1 65 ALA 65 65 65 ALA ALA B . n B 1 66 PRO 66 66 66 PRO PRO B . n B 1 67 ASP 67 67 67 ASP ASP B . n B 1 68 GLY 68 68 68 GLY GLY B . n B 1 69 LYS 69 69 69 LYS LYS B . n B 1 70 VAL 70 70 70 VAL VAL B . n B 1 71 LEU 71 71 71 LEU LEU B . n B 1 72 PHE 72 72 72 PHE PHE B . n B 1 73 LEU 73 73 73 LEU LEU B . n B 1 74 THR 74 74 74 THR THR B . n B 1 75 GLU 75 75 75 GLU GLU B . n B 1 76 LYS 76 76 76 LYS LYS B . n B 1 77 GLY 77 77 77 GLY GLY B . n B 1 78 MET 78 78 78 MET MET B . n B 1 79 LYS 79 79 79 LYS LYS B . n B 1 80 GLU 80 80 80 GLU GLU B . n B 1 81 PHE 81 81 81 PHE PHE B . n B 1 82 GLU 82 82 82 GLU GLU B . n B 1 83 GLU 83 83 83 GLU GLU B . n B 1 84 LEU 84 84 84 LEU LEU B . n B 1 85 HIS 85 85 85 HIS HIS B . n B 1 86 GLU 86 86 86 GLU GLU B . n B 1 87 PHE 87 87 87 PHE PHE B . n B 1 88 PHE 88 88 88 PHE PHE B . n B 1 89 LYS 89 89 89 LYS LYS B . n B 1 90 LYS 90 90 90 LYS LYS B . n B 1 91 ILE 91 91 91 ILE ILE B . n B 1 92 VAL 92 92 92 VAL VAL B . n B 1 93 CYS 93 93 93 CYS CYS B . n B 1 94 HIS 94 94 94 HIS HIS B . n B 1 95 HIS 95 95 ? ? ? B . n B 1 96 HIS 96 96 ? ? ? B . n B 1 97 HIS 97 97 ? ? ? B . n B 1 98 HIS 98 98 ? ? ? B . n B 1 99 HIS 99 99 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 2001 2001 HOH HOH A . C 2 HOH 2 2002 2002 HOH HOH A . C 2 HOH 3 2003 2003 HOH HOH A . C 2 HOH 4 2004 2004 HOH HOH A . C 2 HOH 5 2005 2005 HOH HOH A . C 2 HOH 6 2006 2006 HOH HOH A . C 2 HOH 7 2007 2007 HOH HOH A . C 2 HOH 8 2008 2008 HOH HOH A . C 2 HOH 9 2009 2009 HOH HOH A . C 2 HOH 10 2010 2010 HOH HOH A . C 2 HOH 11 2011 2011 HOH HOH A . C 2 HOH 12 2012 2012 HOH HOH A . C 2 HOH 13 2013 2013 HOH HOH A . C 2 HOH 14 2014 2014 HOH HOH A . C 2 HOH 15 2015 2015 HOH HOH A . C 2 HOH 16 2016 2016 HOH HOH A . C 2 HOH 17 2017 2017 HOH HOH A . C 2 HOH 18 2018 2018 HOH HOH A . C 2 HOH 19 2019 2019 HOH HOH A . C 2 HOH 20 2020 2020 HOH HOH A . C 2 HOH 21 2021 2021 HOH HOH A . C 2 HOH 22 2022 2022 HOH HOH A . C 2 HOH 23 2023 2023 HOH HOH A . C 2 HOH 24 2024 2024 HOH HOH A . C 2 HOH 25 2025 2025 HOH HOH A . C 2 HOH 26 2026 2026 HOH HOH A . C 2 HOH 27 2027 2027 HOH HOH A . C 2 HOH 28 2028 2028 HOH HOH A . C 2 HOH 29 2029 2029 HOH HOH A . C 2 HOH 30 2030 2030 HOH HOH A . C 2 HOH 31 2031 2031 HOH HOH A . C 2 HOH 32 2032 2032 HOH HOH A . D 2 HOH 1 2001 2001 HOH HOH B . D 2 HOH 2 2002 2002 HOH HOH B . D 2 HOH 3 2003 2003 HOH HOH B . D 2 HOH 4 2004 2004 HOH HOH B . D 2 HOH 5 2005 2005 HOH HOH B . D 2 HOH 6 2006 2006 HOH HOH B . D 2 HOH 7 2007 2007 HOH HOH B . D 2 HOH 8 2008 2008 HOH HOH B . D 2 HOH 9 2009 2009 HOH HOH B . D 2 HOH 10 2010 2010 HOH HOH B . D 2 HOH 11 2011 2011 HOH HOH B . D 2 HOH 12 2012 2012 HOH HOH B . D 2 HOH 13 2013 2013 HOH HOH B . D 2 HOH 14 2014 2014 HOH HOH B . D 2 HOH 15 2015 2015 HOH HOH B . D 2 HOH 16 2016 2016 HOH HOH B . D 2 HOH 17 2017 2017 HOH HOH B . D 2 HOH 18 2018 2018 HOH HOH B . D 2 HOH 19 2019 2019 HOH HOH B . D 2 HOH 20 2020 2020 HOH HOH B . D 2 HOH 21 2021 2021 HOH HOH B . D 2 HOH 22 2022 2022 HOH HOH B . D 2 HOH 23 2023 2023 HOH HOH B . D 2 HOH 24 2024 2024 HOH HOH B . D 2 HOH 25 2025 2025 HOH HOH B . D 2 HOH 26 2026 2026 HOH HOH B . D 2 HOH 27 2027 2027 HOH HOH B . D 2 HOH 28 2028 2028 HOH HOH B . D 2 HOH 29 2029 2029 HOH HOH B . D 2 HOH 30 2030 2030 HOH HOH B . D 2 HOH 31 2031 2031 HOH HOH B . D 2 HOH 32 2032 2032 HOH HOH B . D 2 HOH 33 2033 2033 HOH HOH B . D 2 HOH 34 2034 2034 HOH HOH B . D 2 HOH 35 2035 2035 HOH HOH B . D 2 HOH 36 2036 2036 HOH HOH B . D 2 HOH 37 2037 2037 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2240 ? 1 MORE -25.3 ? 1 'SSA (A^2)' 12350 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2009 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-05-31 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2019-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Experimental preparation' 5 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_PDB_rev 2 3 'Structure model' database_PDB_rev_record 3 3 'Structure model' exptl_crystal_grow 4 3 'Structure model' pdbx_database_proc 5 3 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_exptl_crystal_grow.method' 2 3 'Structure model' '_pdbx_database_status.recvd_author_approval' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 7.2277 32.7695 63.0293 -0.2078 -0.1059 -0.1051 -0.0632 0.0231 0.0422 14.1314 12.5129 26.2171 -5.1238 5.6652 11.7842 -0.0557 -0.8368 -0.9250 0.7418 -0.0546 0.4257 0.1188 -0.9239 0.1103 'X-RAY DIFFRACTION' 2 ? refined 16.2640 24.4186 54.7554 -0.1440 0.0616 0.0675 -0.0014 -0.0178 -0.2077 3.4378 6.2177 7.3208 2.5352 1.1250 4.1665 0.2537 0.6993 -1.0540 -0.2018 0.3587 -0.4954 0.4757 0.6640 -0.6125 'X-RAY DIFFRACTION' 3 ? refined 21.0726 31.8520 54.2215 -0.2510 0.1272 -0.0685 -0.0045 0.1133 -0.1144 15.1947 24.9437 24.9963 -4.5439 11.2707 -10.3665 0.3170 1.1980 -0.6809 -1.0047 -0.2259 -1.2138 0.8876 1.3095 -0.0911 'X-RAY DIFFRACTION' 4 ? refined 15.0257 25.9060 64.9281 -0.1737 -0.0117 0.0142 0.0398 -0.0344 0.0093 7.7068 6.6473 5.4161 2.5481 -0.0210 0.0082 0.1409 -0.3828 -1.1696 0.5543 -0.0103 -0.2378 0.5660 0.5097 -0.1306 'X-RAY DIFFRACTION' 5 ? refined 18.0317 17.3610 59.9388 0.1372 0.0390 0.5646 0.1052 -0.1140 -0.1674 34.4101 10.7585 5.1402 8.6967 9.8981 -1.9289 1.0711 0.1719 -3.3220 -0.0084 -0.0021 -2.0474 0.9618 0.7577 -1.0690 'X-RAY DIFFRACTION' 6 ? refined 2.6562 22.1842 55.3271 -0.0625 -0.2007 0.1250 -0.0600 -0.0529 -0.0286 87.7111 60.6344 17.5515 -30.7529 33.6062 3.4841 0.1156 -0.4213 -0.6555 0.3257 -0.1217 0.0100 1.9412 -1.6999 0.0061 'X-RAY DIFFRACTION' 7 ? refined -1.7414 33.2388 49.6889 -0.1972 -0.1013 -0.1009 -0.0282 -0.0005 -0.1078 21.1497 27.6285 19.7020 -8.1168 4.0798 -7.1910 0.5315 1.0834 -0.3423 -1.2201 -0.4094 0.6193 0.0630 0.0405 -0.1221 'X-RAY DIFFRACTION' 8 ? refined 3.4863 43.5004 58.7386 -0.1006 -0.2008 -0.2355 -0.0533 0.0109 0.0071 10.2321 4.5065 4.8534 -2.7439 4.2950 1.3876 -0.2274 0.4847 0.2948 -0.0927 0.1546 -0.4500 -0.4656 0.3906 0.0728 'X-RAY DIFFRACTION' 9 ? refined -13.6969 47.5879 55.6790 0.0035 0.1047 -0.1317 0.2041 -0.0998 0.0104 3.7741 18.1392 3.9872 3.4158 0.2404 -1.8161 -0.2423 0.4590 0.2217 -0.7893 0.0278 1.1858 -1.2183 -1.3333 0.2146 'X-RAY DIFFRACTION' 10 ? refined -10.0089 40.9324 61.3935 -0.1824 -0.0970 -0.1287 0.0427 -0.0707 0.0477 6.7804 5.0827 12.0734 2.5643 0.4066 5.1796 0.0159 0.1880 -0.4772 -0.2962 -0.0994 0.3291 -0.0862 -1.0670 0.0836 'X-RAY DIFFRACTION' 11 ? refined -3.5354 54.8971 63.3442 0.2970 -0.2538 -0.1416 0.0663 -0.0392 0.0223 7.7424 9.1056 16.5269 2.7508 2.1949 -0.9686 -0.2220 -0.3555 0.5149 -0.2901 0.3518 0.3891 -1.7956 -0.4329 -0.1298 'X-RAY DIFFRACTION' 12 ? refined -9.6487 57.2819 58.8362 0.3816 -0.1858 -0.0452 0.1909 -0.0699 0.0621 22.7338 8.1711 6.8963 2.6957 -1.6843 -0.6102 0.0832 0.2282 1.8742 -0.2929 0.1332 0.8421 -1.2162 -1.0032 -0.2165 'X-RAY DIFFRACTION' 13 ? refined 4.9682 47.3508 51.7156 0.0462 -0.0443 -0.1876 -0.1372 0.0874 0.0643 15.7438 41.7272 8.9476 -24.4540 -2.4347 2.8024 0.2798 1.1935 1.0020 -0.4225 0.0504 -1.3491 -1.6648 0.7797 -0.3302 'X-RAY DIFFRACTION' 14 ? refined 6.7937 36.7523 48.1151 -0.1126 0.0396 -0.2366 -0.0479 0.0705 0.0103 20.5325 32.9760 0.0486 -5.0045 -0.8309 0.8932 -0.0591 1.8088 -0.2049 -1.4839 -0.5085 -0.4769 -0.0315 0.8266 0.5676 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 5 ? ? A 12 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 13 ? ? A 27 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 28 ? ? A 39 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 40 ? ? A 62 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 63 ? ? A 78 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 79 ? ? A 83 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 84 ? ? A 96 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 B 1 ? ? B 16 ? ? ? ? 'X-RAY DIFFRACTION' 9 9 B 17 ? ? B 36 ? ? ? ? 'X-RAY DIFFRACTION' 10 10 B 37 ? ? B 51 ? ? ? ? 'X-RAY DIFFRACTION' 11 11 B 52 ? ? B 62 ? ? ? ? 'X-RAY DIFFRACTION' 12 12 B 63 ? ? B 78 ? ? ? ? 'X-RAY DIFFRACTION' 13 13 B 79 ? ? B 87 ? ? ? ? 'X-RAY DIFFRACTION' 14 14 B 88 ? ? B 94 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data reduction' . ? 1 HKL-2000 'data scaling' . ? 2 SOLVE phasing . ? 3 RESOLVE phasing . ? 4 REFMAC refinement 5.2.0019 ? 5 # _pdbx_entry_details.entry_id 2CO5 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;C-TERMINAL 6XHIS TAG WAS ADDED DURING CLONING TO FACILITATE PURIFICATION ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 67 ? ? -96.95 35.50 2 1 HIS A 95 ? ? -61.65 -72.56 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 HIS _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 95 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 HIS _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 96 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -146.64 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2016 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.03 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A LYS 2 ? A LYS 2 3 1 Y 1 A ILE 3 ? A ILE 3 4 1 Y 1 A ARG 4 ? A ARG 4 5 1 Y 1 A HIS 97 ? A HIS 97 6 1 Y 1 A HIS 98 ? A HIS 98 7 1 Y 1 A HIS 99 ? A HIS 99 8 1 Y 1 B HIS 95 ? B HIS 95 9 1 Y 1 B HIS 96 ? B HIS 96 10 1 Y 1 B HIS 97 ? B HIS 97 11 1 Y 1 B HIS 98 ? B HIS 98 12 1 Y 1 B HIS 99 ? B HIS 99 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #