HEADER TRANSFERASE 17-MAY-05 2COE TITLE SOLUTION STRUCTURE OF BRCT DOMAIN OF TERMINAL TITLE 2 DEOXYNUCLEOTIDYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYNUCLEOTIDYLTRANSFERASE, TERMINAL VARIANT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BRCA1 C-TURMINUS (BRCT) DOMAIN; COMPND 5 EC: 2.7.7.31; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DNTT, TDT; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040621-11; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS BRCT DOMAIN, DNA POLYMERASE, TEMINAL DEOXYNUCLEOTIDYLTRANSFERASE, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2COE 1 REMARK SEQADV REVDAT 2 24-FEB-09 2COE 1 VERSN REVDAT 1 17-NOV-05 2COE 0 JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF BRCT DOMAIN OF TERMINAL JRNL TITL 2 DEOXYNUCLEOTIDYLTRANSFERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.07 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2COE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024446. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.26MM BRCT DOAMIN U-13C,15N; REMARK 210 20MM TRISHCL, 100MM NACL, 1MM REMARK 210 DTT, 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.901, CYANA 1.07 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TRP A 95 H CYS A 99 1.50 REMARK 500 O THR A 35 H ALA A 39 1.50 REMARK 500 O VAL A 93 H ILE A 97 1.50 REMARK 500 H ILE A 63 O GLU A 89 1.50 REMARK 500 O THR A 36 H LEU A 40 1.55 REMARK 500 O TRP A 76 HE21 GLN A 80 1.58 REMARK 500 O PHE A 27 H VAL A 64 1.59 REMARK 500 O ASP A 92 H TRP A 95 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 -59.02 -148.17 REMARK 500 1 SER A 6 164.08 63.39 REMARK 500 1 SER A 14 75.06 42.43 REMARK 500 1 SER A 15 75.75 175.57 REMARK 500 1 GLN A 17 58.49 -179.46 REMARK 500 1 GLN A 22 31.49 -96.86 REMARK 500 1 ASP A 23 39.13 -167.08 REMARK 500 1 LYS A 31 125.49 -39.73 REMARK 500 1 MET A 33 -72.70 -179.67 REMARK 500 1 THR A 36 -70.24 -38.68 REMARK 500 1 LEU A 40 -73.16 -56.06 REMARK 500 1 ARG A 51 79.81 -101.99 REMARK 500 1 ASN A 67 -57.64 75.20 REMARK 500 1 GLN A 87 130.49 -38.23 REMARK 500 1 VAL A 106 157.76 -42.31 REMARK 500 2 LEU A 11 60.66 -153.91 REMARK 500 2 MET A 12 86.69 -178.50 REMARK 500 2 ALA A 13 -38.98 -178.52 REMARK 500 2 SER A 14 -82.21 64.34 REMARK 500 2 SER A 15 149.10 73.49 REMARK 500 2 GLN A 22 14.69 59.43 REMARK 500 2 MET A 33 -69.29 -179.07 REMARK 500 2 THR A 36 -70.21 -39.86 REMARK 500 2 LEU A 40 -73.39 -51.38 REMARK 500 2 ARG A 51 83.53 -59.28 REMARK 500 2 GLN A 80 159.96 -48.81 REMARK 500 2 VAL A 106 165.43 -47.75 REMARK 500 2 SER A 115 153.29 178.69 REMARK 500 2 SER A 118 -60.45 -147.57 REMARK 500 2 SER A 119 91.02 43.96 REMARK 500 3 SER A 6 109.10 -166.21 REMARK 500 3 MET A 12 91.60 51.62 REMARK 500 3 SER A 14 85.38 -164.34 REMARK 500 3 GLN A 22 -53.64 76.38 REMARK 500 3 ASP A 23 39.12 -89.92 REMARK 500 3 LYS A 31 133.26 -39.82 REMARK 500 3 MET A 33 -70.71 -179.57 REMARK 500 3 THR A 36 -70.74 -38.67 REMARK 500 3 ARG A 51 79.24 -69.80 REMARK 500 3 GLU A 107 153.71 -49.68 REMARK 500 3 LYS A 111 -60.64 -99.20 REMARK 500 3 SER A 115 93.66 58.74 REMARK 500 4 SER A 2 159.92 -49.89 REMARK 500 4 SER A 3 117.67 -178.65 REMARK 500 4 SER A 6 -77.18 -172.10 REMARK 500 4 ALA A 10 137.35 -171.88 REMARK 500 4 LEU A 11 -65.41 -138.65 REMARK 500 4 ALA A 13 88.42 -166.11 REMARK 500 4 SER A 14 147.14 -179.30 REMARK 500 4 GLN A 17 63.57 -117.93 REMARK 500 REMARK 500 THIS ENTRY HAS 306 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001003900.1 RELATED DB: TARGETDB DBREF 2COE A 8 114 UNP P04053 TDT_HUMAN 19 125 SEQADV 2COE GLY A 1 UNP P04053 CLONING ARTIFACT SEQADV 2COE SER A 2 UNP P04053 CLONING ARTIFACT SEQADV 2COE SER A 3 UNP P04053 CLONING ARTIFACT SEQADV 2COE GLY A 4 UNP P04053 CLONING ARTIFACT SEQADV 2COE SER A 5 UNP P04053 CLONING ARTIFACT SEQADV 2COE SER A 6 UNP P04053 CLONING ARTIFACT SEQADV 2COE GLY A 7 UNP P04053 CLONING ARTIFACT SEQADV 2COE SER A 115 UNP P04053 CLONING ARTIFACT SEQADV 2COE GLY A 116 UNP P04053 CLONING ARTIFACT SEQADV 2COE PRO A 117 UNP P04053 CLONING ARTIFACT SEQADV 2COE SER A 118 UNP P04053 CLONING ARTIFACT SEQADV 2COE SER A 119 UNP P04053 CLONING ARTIFACT SEQADV 2COE GLY A 120 UNP P04053 CLONING ARTIFACT SEQRES 1 A 120 GLY SER SER GLY SER SER GLY THR GLY ALA LEU MET ALA SEQRES 2 A 120 SER SER PRO GLN ASP ILE LYS PHE GLN ASP LEU VAL VAL SEQRES 3 A 120 PHE ILE LEU GLU LYS LYS MET GLY THR THR ARG ARG ALA SEQRES 4 A 120 LEU LEU MET GLU LEU ALA ARG ARG LYS GLY PHE ARG VAL SEQRES 5 A 120 GLU ASN GLU LEU SER ASP SER VAL THR HIS ILE VAL ALA SEQRES 6 A 120 GLU ASN ASN SER GLY SER ASP VAL LEU GLU TRP LEU GLN SEQRES 7 A 120 ALA GLN LYS VAL GLN VAL SER SER GLN PRO GLU LEU LEU SEQRES 8 A 120 ASP VAL SER TRP LEU ILE GLU CYS ILE GLY ALA GLY LYS SEQRES 9 A 120 PRO VAL GLU MET THR GLY LYS HIS GLN LEU SER GLY PRO SEQRES 10 A 120 SER SER GLY HELIX 1 1 GLY A 34 LYS A 48 1 15 HELIX 2 2 SER A 69 GLN A 80 1 12 HELIX 3 3 VAL A 93 ALA A 102 1 10 SHEET 1 A 4 ARG A 51 VAL A 52 0 SHEET 2 A 4 VAL A 25 LEU A 29 1 N VAL A 26 O ARG A 51 SHEET 3 A 4 HIS A 62 ALA A 65 1 O VAL A 64 N PHE A 27 SHEET 4 A 4 GLU A 89 ASP A 92 1 O GLU A 89 N ILE A 63 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1