HEADER LYASE/METAL BINDING PROTEIN 18-MAY-05 2COL TITLE CRYSTAL STRUCTURE ANALYSIS OF CYAA/C-CAM WITH PYROPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL HEMOLYSIN-ADENYLATE CYCLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADENYLYL CYCALSE, CYCLOLYSIN, ACT, AC-HLY; COMPND 5 EC: 4.6.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CALMODULIN; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA PERTUSSIS; SOURCE 3 ORGANISM_TAXID: 520; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 8 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 9 ORGANISM_TAXID: 8355; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LYASE, CALCIUM BINDING, LYASE-METAL BINDING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Q.GUO,W.J.TANG,Y.SHEN REVDAT 3 13-MAR-24 2COL 1 REMARK LINK REVDAT 2 24-FEB-09 2COL 1 VERSN REVDAT 1 24-JAN-06 2COL 0 JRNL AUTH Q.GUO,Y.SHEN,Y.S.LEE,C.S.GIBBS,M.MRKSICH,W.J.TANG JRNL TITL STRUCTURAL BASIS FOR THE INTERACTION OF BORDETELLA PERTUSSIS JRNL TITL 2 ADENYLYL CYCLASE TOXIN WITH CALMODULIN JRNL REF EMBO J. V. 24 3190 2005 JRNL REFN ISSN 0261-4189 JRNL PMID 16138079 JRNL DOI 10.1038/SJ.EMBOJ.7600800 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 22247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1058 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3395 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 150 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.032 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3214 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.63000 REMARK 3 B22 (A**2) : 2.63000 REMARK 3 B33 (A**2) : -5.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM SIGMAA (A) : 0.42 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.51 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.35 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.023 REMARK 3 BOND ANGLES (DEGREES) : 2.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.440 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : PPI.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : PPI.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2COL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024453. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, NA CITRATE, PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.73250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.80650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.80650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.86625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.80650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.80650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 104.59875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.80650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.80650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.86625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.80650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.80650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 104.59875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.73250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 226 REMARK 465 SER A 227 REMARK 465 GLU A 228 REMARK 465 ALA A 229 REMARK 465 THR A 230 REMARK 465 GLY A 231 REMARK 465 GLY A 232 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 86 N GLY A 87 1.37 REMARK 500 O THR A 130 N GLY A 131 1.79 REMARK 500 NE ARG A 124 CE MET A 132 1.82 REMARK 500 O ALA A 133 N GLY A 135 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 85 C PHE A 86 N 0.290 REMARK 500 PHE A 86 C GLY A 87 N -0.554 REMARK 500 THR A 130 C GLY A 131 N -0.625 REMARK 500 GLY A 131 N GLY A 131 CA 0.256 REMARK 500 ALA A 133 C ASP A 134 N -0.421 REMARK 500 PHE A 171 N PHE A 171 CA 0.188 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 85 O - C - N ANGL. DEV. = -10.6 DEGREES REMARK 500 PHE A 86 C - N - CA ANGL. DEV. = 15.1 DEGREES REMARK 500 PHE A 86 CA - C - N ANGL. DEV. = 35.2 DEGREES REMARK 500 PHE A 86 O - C - N ANGL. DEV. = -41.1 DEGREES REMARK 500 GLY A 87 C - N - CA ANGL. DEV. = 23.2 DEGREES REMARK 500 THR A 130 CA - C - N ANGL. DEV. = -14.6 DEGREES REMARK 500 GLY A 131 N - CA - C ANGL. DEV. = -21.1 DEGREES REMARK 500 ALA A 133 N - CA - C ANGL. DEV. = -26.9 DEGREES REMARK 500 ASP A 134 CA - C - N ANGL. DEV. = -17.7 DEGREES REMARK 500 ARG A 165 CA - C - N ANGL. DEV. = -15.9 DEGREES REMARK 500 ARG A 165 O - C - N ANGL. DEV. = 10.9 DEGREES REMARK 500 GLY A 168 N - CA - C ANGL. DEV. = -24.2 DEGREES REMARK 500 ASP A 169 CA - C - N ANGL. DEV. = -15.7 DEGREES REMARK 500 PHE A 171 N - CA - CB ANGL. DEV. = -11.4 DEGREES REMARK 500 PHE A 171 N - CA - C ANGL. DEV. = 23.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 63 32.88 -141.05 REMARK 500 LYS A 65 141.32 -35.30 REMARK 500 LYS A 84 35.75 -62.94 REMARK 500 PHE A 86 -71.93 -65.98 REMARK 500 ARG A 88 -149.63 -114.62 REMARK 500 ASP A 121 -72.23 -60.67 REMARK 500 ASP A 134 99.31 -54.16 REMARK 500 VAL A 136 82.01 -63.98 REMARK 500 ALA A 142 -47.41 -17.34 REMARK 500 GLN A 146 -36.58 -135.41 REMARK 500 ARG A 150 -178.90 -171.35 REMARK 500 SER A 155 36.24 -80.11 REMARK 500 LYS A 166 91.55 -10.01 REMARK 500 ASP A 169 -163.18 -57.85 REMARK 500 ASP A 170 92.06 76.17 REMARK 500 PHE A 171 155.20 -49.60 REMARK 500 VAL A 174 134.13 -38.09 REMARK 500 ARG A 224 169.91 -47.69 REMARK 500 PHE A 306 58.82 -109.30 REMARK 500 SER A 317 165.05 -47.48 REMARK 500 ALA A 353 34.30 -92.11 REMARK 500 ASP A 360 -152.11 -116.54 REMARK 500 ASN B 97 149.34 -33.03 REMARK 500 ASP B 129 77.52 -68.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 130 GLY A 131 -124.00 REMARK 500 ASP A 170 PHE A 171 149.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE A 86 -34.12 REMARK 500 THR A 130 16.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 907 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 188 OD1 REMARK 620 2 ASP A 188 OD2 49.2 REMARK 620 3 ASP A 190 OD1 76.4 76.8 REMARK 620 4 HIS A 298 ND1 125.1 77.9 108.2 REMARK 620 5 HIS A 298 NE2 144.9 99.9 80.7 40.6 REMARK 620 6 HOH A 964 O 98.5 147.5 101.2 131.5 111.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 908 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 188 OD2 REMARK 620 2 ILE A 189 O 104.1 REMARK 620 3 GLN A 297 N 94.8 130.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 93 OD2 REMARK 620 2 ASP B 95 OD1 83.8 REMARK 620 3 ASN B 97 ND2 108.2 93.5 REMARK 620 4 ASN B 97 O 49.5 77.1 60.0 REMARK 620 5 TYR B 99 O 76.9 160.7 93.5 91.0 REMARK 620 6 GLU B 104 OE1 93.9 90.5 157.9 141.9 89.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 800 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 129 OD2 REMARK 620 2 ASP B 131 OD1 69.1 REMARK 620 3 ASP B 131 OD2 110.9 46.0 REMARK 620 4 ASP B 133 OD1 85.1 67.2 89.0 REMARK 620 5 GLN B 135 O 96.4 138.7 146.1 73.3 REMARK 620 6 GLU B 140 OE1 109.4 126.8 94.9 162.2 94.4 REMARK 620 7 GLU B 140 OE2 93.9 81.2 60.1 146.6 139.7 45.6 REMARK 620 8 HOH B 803 O 162.6 98.7 63.2 78.5 84.6 87.8 96.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 908 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP A 893 DBREF 2COL A 7 362 UNP P15318 CYAA_BORPE 7 362 DBREF 2COL B 79 145 UNP P62155 CALM_XENLA 79 145 SEQRES 1 A 356 ALA GLY TYR ALA ASN ALA ALA ASP ARG GLU SER GLY ILE SEQRES 2 A 356 PRO ALA ALA VAL LEU ASP GLY ILE LYS ALA VAL ALA LYS SEQRES 3 A 356 GLU LYS ASN ALA THR LEU MET PHE ARG LEU VAL ASN PRO SEQRES 4 A 356 HIS SER THR SER LEU ILE ALA GLU GLY VAL ALA THR LYS SEQRES 5 A 356 GLY LEU GLY VAL HIS ALA LYS SER SER ASP TRP GLY LEU SEQRES 6 A 356 GLN ALA GLY TYR ILE PRO VAL ASN PRO ASN LEU SER LYS SEQRES 7 A 356 LEU PHE GLY ARG ALA PRO GLU VAL ILE ALA ARG ALA ASP SEQRES 8 A 356 ASN ASP VAL ASN SER SER LEU ALA HIS GLY HIS THR ALA SEQRES 9 A 356 VAL ASP LEU THR LEU SER LYS GLU ARG LEU ASP TYR LEU SEQRES 10 A 356 ARG GLN ALA GLY LEU VAL THR GLY MET ALA ASP GLY VAL SEQRES 11 A 356 VAL ALA SER ASN HIS ALA GLY TYR GLU GLN PHE GLU PHE SEQRES 12 A 356 ARG VAL LYS GLU THR SER ASP GLY ARG TYR ALA VAL GLN SEQRES 13 A 356 TYR ARG ARG LYS GLY GLY ASP ASP PHE GLU ALA VAL LYS SEQRES 14 A 356 VAL ILE GLY ASN ALA ALA GLY ILE PRO LEU THR ALA ASP SEQRES 15 A 356 ILE ASP MET PHE ALA ILE MET PRO HIS LEU SER ASN PHE SEQRES 16 A 356 ARG ASP SER ALA ARG SER SER VAL THR SER GLY ASP SER SEQRES 17 A 356 VAL THR ASP TYR LEU ALA ARG THR ARG ARG ALA ALA SER SEQRES 18 A 356 GLU ALA THR GLY GLY LEU ASP ARG GLU ARG ILE ASP LEU SEQRES 19 A 356 LEU TRP LYS ILE ALA ARG ALA GLY ALA ARG SER ALA VAL SEQRES 20 A 356 GLY THR GLU ALA ARG ARG GLN PHE ARG TYR ASP GLY ASP SEQRES 21 A 356 MET ASN ILE GLY VAL ILE THR ASP PHE GLU LEU GLU VAL SEQRES 22 A 356 ARG ASN ALA LEU ASN ARG ARG ALA HIS ALA VAL GLY ALA SEQRES 23 A 356 GLN ASP VAL VAL GLN HIS GLY THR GLU GLN ASN ASN PRO SEQRES 24 A 356 PHE PRO GLU ALA ASP GLU LYS ILE PHE VAL VAL SER ALA SEQRES 25 A 356 THR GLY GLU SER GLN MET LEU THR ARG GLY GLN LEU LYS SEQRES 26 A 356 GLU TYR ILE GLY GLN GLN ARG GLY GLU GLY TYR VAL PHE SEQRES 27 A 356 TYR GLU ASN ARG ALA TYR GLY VAL ALA GLY LYS SER LEU SEQRES 28 A 356 PHE ASP ASP GLY LEU SEQRES 1 B 67 THR ASP SER GLU GLU GLU ILE ARG GLU ALA PHE ARG VAL SEQRES 2 B 67 PHE ASP LYS ASP GLY ASN GLY TYR ILE SER ALA ALA GLU SEQRES 3 B 67 LEU ARG HIS VAL MET THR ASN LEU GLY GLU LYS LEU THR SEQRES 4 B 67 ASP GLU GLU VAL ASP GLU MET ILE ARG GLU ALA ASP ILE SEQRES 5 B 67 ASP GLY ASP GLY GLN VAL ASN TYR GLU GLU PHE VAL GLN SEQRES 6 B 67 MET MET HET MG A 907 1 HET MG A 908 1 HET POP A 893 9 HET CA B 800 1 HET CA B 801 1 HETNAM MG MAGNESIUM ION HETNAM POP PYROPHOSPHATE 2- HETNAM CA CALCIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 POP H2 O7 P2 2- FORMUL 6 CA 2(CA 2+) FORMUL 8 HOH *118(H2 O) HELIX 1 1 ASN A 11 SER A 17 1 7 HELIX 2 2 PRO A 20 LYS A 34 1 15 HELIX 3 3 ASN A 44 GLY A 54 1 11 HELIX 4 4 ALA A 89 HIS A 106 1 18 HELIX 5 5 SER A 116 ALA A 126 1 11 HELIX 6 6 HIS A 141 GLU A 145 5 5 HELIX 7 7 LEU A 198 ASN A 200 5 3 HELIX 8 8 PHE A 201 THR A 210 1 10 HELIX 9 9 SER A 214 ARG A 223 1 10 HELIX 10 10 ASP A 234 VAL A 253 1 20 HELIX 11 11 THR A 255 GLN A 260 5 6 HELIX 12 12 THR A 273 VAL A 290 1 18 HELIX 13 13 THR A 300 ASN A 304 5 5 HELIX 14 14 THR A 326 GLU A 340 1 15 HELIX 15 15 SER B 81 ASP B 93 1 13 HELIX 16 16 SER B 101 LEU B 112 1 12 HELIX 17 17 THR B 117 ASP B 129 1 13 HELIX 18 18 ASN B 137 GLN B 143 1 7 SHEET 1 A 4 MET A 191 PRO A 196 0 SHEET 2 A 4 ALA A 36 PHE A 40 -1 N THR A 37 O MET A 195 SHEET 3 A 4 ILE A 313 VAL A 316 -1 O VAL A 316 N LEU A 38 SHEET 4 A 4 SER A 322 LEU A 325 -1 O GLN A 323 N VAL A 315 SHEET 1 B 2 ALA A 56 THR A 57 0 SHEET 2 B 2 LEU A 185 THR A 186 1 O THR A 186 N ALA A 56 SHEET 1 C 2 THR A 109 ASP A 112 0 SHEET 2 C 2 LYS A 175 GLY A 178 -1 O GLY A 178 N THR A 109 SHEET 1 D 3 THR A 114 LEU A 115 0 SHEET 2 D 3 TYR A 159 ARG A 165 -1 O TYR A 159 N LEU A 115 SHEET 3 D 3 PHE A 147 LYS A 152 -1 N LYS A 152 O ALA A 160 SHEET 1 E 3 THR A 114 LEU A 115 0 SHEET 2 E 3 TYR A 159 ARG A 165 -1 O TYR A 159 N LEU A 115 SHEET 3 E 3 GLU A 172 ALA A 173 -1 O GLU A 172 N TYR A 163 SHEET 1 F 2 TYR A 263 ASP A 264 0 SHEET 2 F 2 MET A 267 ASN A 268 -1 O MET A 267 N ASP A 264 LINK OD1 ASP A 188 MG MG A 907 1555 1555 2.82 LINK OD2 ASP A 188 MG MG A 907 1555 1555 2.36 LINK OD2 ASP A 188 MG MG A 908 1555 1555 2.91 LINK O ILE A 189 MG MG A 908 1555 1555 3.06 LINK OD1 ASP A 190 MG MG A 907 1555 1555 2.33 LINK N GLN A 297 MG MG A 908 1555 1555 2.65 LINK ND1 HIS A 298 MG MG A 907 1555 1555 3.03 LINK NE2 HIS A 298 MG MG A 907 1555 1555 3.14 LINK MG MG A 907 O HOH A 964 1555 1555 2.44 LINK OD2 ASP B 93 CA CA B 801 1555 1555 2.31 LINK OD1 ASP B 95 CA CA B 801 1555 1555 2.59 LINK ND2 ASN B 97 CA CA B 801 1555 1555 2.37 LINK O ASN B 97 CA CA B 801 1555 1555 3.31 LINK O TYR B 99 CA CA B 801 1555 1555 2.21 LINK OE1 GLU B 104 CA CA B 801 1555 1555 2.46 LINK OD2 ASP B 129 CA CA B 800 1555 1555 2.34 LINK OD1 ASP B 131 CA CA B 800 1555 1555 2.55 LINK OD2 ASP B 131 CA CA B 800 1555 1555 2.99 LINK OD1 ASP B 133 CA CA B 800 1555 1555 2.38 LINK O GLN B 135 CA CA B 800 1555 1555 2.33 LINK OE1 GLU B 140 CA CA B 800 1555 1555 2.16 LINK OE2 GLU B 140 CA CA B 800 1555 1555 3.05 LINK CA CA B 800 O HOH B 803 1555 1555 2.76 SITE 1 AC1 6 ASP B 129 ASP B 131 ASP B 133 GLN B 135 SITE 2 AC1 6 GLU B 140 HOH B 803 SITE 1 AC2 5 ASP B 93 ASP B 95 ASN B 97 TYR B 99 SITE 2 AC2 5 GLU B 104 SITE 1 AC3 4 ASP A 188 ASP A 190 HIS A 298 HOH A 964 SITE 1 AC4 5 ASP A 188 ILE A 189 VAL A 296 GLN A 297 SITE 2 AC4 5 HIS A 298 SITE 1 AC5 4 LYS A 58 LYS A 65 ASP A 190 HOH A 964 CRYST1 79.613 79.613 139.465 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012561 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012561 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007170 0.00000