HEADER PROTEIN BINDING 19-MAY-05 2CP8 TITLE SOLUTION STRUCTURE OF THE RSGI RUH-046, A UBA DOMAIN FROM HUMAN NEXT TITLE 2 TO BRCA1 GENE 1 PROTEIN (KIAA0049 PROTEIN) R923H VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEXT TO BRCA1 GENE 1 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBA; COMPND 5 SYNONYM: KIAA0049 PROTEIN, NEIGHBOR OF BRCA1 GENE 1 PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: P040719-07; SOURCE 7 OTHER_DETAILS: CELL-FREE (E.COLI) KEYWDS UBA DOMAIN, STRUCTURAL GENOMICS, HUMAN, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.OHASHI,H.HIROTA,T.YAMAZAKI,Y.MUTO,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CP8 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CP8 1 VERSN REVDAT 1 19-NOV-05 2CP8 0 JRNL AUTH W.OHASHI,H.HIROTA,T.YAMAZAKI,Y.MUTO,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RSGI RUH-046, A UBA DOMAIN FROM JRNL TITL 2 HUMAN NEXT TO BRCA1 GENE 1 PROTEIN (KIAA0049 PROTEIN) R923H JRNL TITL 3 VARIANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.1, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CP8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024473. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.62MM RSGI RUH-046 U-13C, 15N; REMARK 210 20MM TRIS-HCL U-2H, 100MM NACL, REMARK 210 1MM DTT U-2H, 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.1, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : SIMULATED ANNELING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 33 -38.60 -134.34 REMARK 500 2 MET A 13 -34.47 -37.40 REMARK 500 2 CYS A 22 40.32 -103.16 REMARK 500 2 ILE A 38 -36.40 -34.06 REMARK 500 2 LEU A 48 48.85 -88.55 REMARK 500 3 THR A 9 -62.30 -95.26 REMARK 500 3 HIS A 15 -38.26 -34.57 REMARK 500 3 CYS A 22 30.58 -92.04 REMARK 500 3 ASN A 27 -75.02 -34.63 REMARK 500 3 HIS A 34 33.58 -95.24 REMARK 500 3 ASN A 35 37.56 37.94 REMARK 500 3 LEU A 39 -71.39 -55.41 REMARK 500 3 THR A 43 -36.18 -39.50 REMARK 500 4 ASP A 23 98.39 -34.45 REMARK 500 4 ILE A 38 -37.65 -34.98 REMARK 500 5 SER A 3 43.54 -82.79 REMARK 500 5 GLN A 8 85.54 -55.06 REMARK 500 5 THR A 9 -74.67 -112.53 REMARK 500 5 HIS A 15 -35.79 -36.05 REMARK 500 5 ASP A 23 105.92 -34.65 REMARK 500 5 ARG A 24 -70.79 -84.31 REMARK 500 5 ASN A 27 -72.56 -35.18 REMARK 500 5 ASN A 35 49.77 37.76 REMARK 500 5 ILE A 38 -35.27 -39.74 REMARK 500 5 VAL A 41 -39.67 -36.22 REMARK 500 5 SER A 53 46.51 34.40 REMARK 500 6 MET A 13 -25.97 -38.96 REMARK 500 6 ARG A 24 -70.41 -93.92 REMARK 500 6 ASN A 37 79.49 -103.66 REMARK 500 7 SER A 6 151.62 -36.87 REMARK 500 7 ALA A 11 -31.04 -37.96 REMARK 500 7 ASP A 23 96.29 -36.38 REMARK 500 7 ASN A 27 -71.07 -41.40 REMARK 500 7 HIS A 34 33.22 -99.02 REMARK 500 7 ASN A 35 36.46 39.38 REMARK 500 7 ILE A 38 -33.50 -33.95 REMARK 500 7 PRO A 51 86.18 -69.73 REMARK 500 8 SER A 5 131.81 -38.43 REMARK 500 8 ASP A 23 94.34 -36.17 REMARK 500 8 ARG A 24 -72.19 -65.13 REMARK 500 8 ASN A 35 36.47 39.19 REMARK 500 8 SER A 49 111.87 -39.14 REMARK 500 9 GLN A 8 77.93 -109.37 REMARK 500 9 THR A 9 -73.65 -101.12 REMARK 500 9 CYS A 22 45.93 -100.21 REMARK 500 9 LEU A 28 -73.47 -51.83 REMARK 500 9 ILE A 38 -33.78 -37.06 REMARK 500 9 LEU A 39 -74.61 -58.82 REMARK 500 9 LEU A 46 -36.86 -39.19 REMARK 500 10 GLN A 8 44.72 -91.34 REMARK 500 REMARK 500 THIS ENTRY HAS 104 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002100046.1 RELATED DB: TARGETDB DBREF 2CP8 A 8 48 UNP Q14596 NBR1_HUMAN 916 956 SEQADV 2CP8 GLY A 1 UNP Q14596 CLONING ARTIFACT SEQADV 2CP8 SER A 2 UNP Q14596 CLONING ARTIFACT SEQADV 2CP8 SER A 3 UNP Q14596 CLONING ARTIFACT SEQADV 2CP8 GLY A 4 UNP Q14596 CLONING ARTIFACT SEQADV 2CP8 SER A 5 UNP Q14596 CLONING ARTIFACT SEQADV 2CP8 SER A 6 UNP Q14596 CLONING ARTIFACT SEQADV 2CP8 GLY A 7 UNP Q14596 CLONING ARTIFACT SEQADV 2CP8 HIS A 15 UNP Q14596 ARG 923 SEE REMARK 999 SEQADV 2CP8 SER A 49 UNP Q14596 CLONING ARTIFACT SEQADV 2CP8 GLY A 50 UNP Q14596 CLONING ARTIFACT SEQADV 2CP8 PRO A 51 UNP Q14596 CLONING ARTIFACT SEQADV 2CP8 SER A 52 UNP Q14596 CLONING ARTIFACT SEQADV 2CP8 SER A 53 UNP Q14596 CLONING ARTIFACT SEQADV 2CP8 GLY A 54 UNP Q14596 CLONING ARTIFACT SEQRES 1 A 54 GLY SER SER GLY SER SER GLY GLN THR ALA ALA LEU MET SEQRES 2 A 54 ALA HIS LEU PHE GLU MET GLY PHE CYS ASP ARG GLN LEU SEQRES 3 A 54 ASN LEU ARG LEU LEU LYS LYS HIS ASN TYR ASN ILE LEU SEQRES 4 A 54 GLN VAL VAL THR GLU LEU LEU GLN LEU SER GLY PRO SER SEQRES 5 A 54 SER GLY HELIX 1 1 GLN A 8 GLY A 20 1 13 HELIX 2 2 ASP A 23 LYS A 32 1 10 HELIX 3 3 ASN A 37 SER A 49 1 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1