HEADER VIRAL PROTEIN 16-APR-98 2CPB TITLE SOLUTION NMR STRUCTURES OF THE MAJOR COAT PROTEIN OF FILAMENTOUS TITLE 2 BACTERIOPHAGE M13 SOLUBILIZED IN DODECYLPHOSPHOCHOLINE MICELLES, 25 TITLE 3 LOWEST ENERGY STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: M13 MAJOR COAT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: M13 GENE-VIII-PROTEIN OR M13 GVIIIP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE M13; SOURCE 3 ORGANISM_TAXID: 10870; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: M13 KEYWDS MAJOR COAT PROTEIN, BACTERIOPHAGE M13, ASSEMBLY, MICELLE, MEMBRANE, KEYWDS 2 VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR C.H.M.PAPAVOINE,B.E.C.CHRISTIAANS,R.H.A.FOLMER,R.N.H.KONINGS, AUTHOR 2 C.W.HILBERS REVDAT 3 09-MAR-22 2CPB 1 REMARK REVDAT 2 24-FEB-09 2CPB 1 VERSN REVDAT 1 11-NOV-98 2CPB 0 JRNL AUTH C.H.PAPAVOINE,B.E.CHRISTIAANS,R.H.FOLMER,R.N.KONINGS, JRNL AUTH 2 C.W.HILBERS JRNL TITL SOLUTION STRUCTURE OF THE M13 MAJOR COAT PROTEIN IN JRNL TITL 2 DETERGENT MICELLES: A BASIS FOR A MODEL OF PHAGE ASSEMBLY JRNL TITL 3 INVOLVING SPECIFIC RESIDUES. JRNL REF J.MOL.BIOL. V. 282 401 1998 JRNL REFN ISSN 0022-2836 JRNL PMID 9735296 JRNL DOI 10.1006/JMBI.1998.1860 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.H.PAPAVOINE,M.L.REMEROWSKI,L.M.HORSTINK,R.N.KONINGS, REMARK 1 AUTH 2 C.W.HILBERS,F.J.VAN DE VEN REMARK 1 TITL BACKBONE DYNAMICS OF THE MAJOR COAT PROTEIN OF BACTERIOPHAGE REMARK 1 TITL 2 M13 IN DETERGENT MICELLES BY 15N NUCLEAR MAGNETIC RESONANCE REMARK 1 TITL 3 RELAXATION MEASUREMENTS USING THE MODEL-FREE APPROACH AND REMARK 1 TITL 4 REDUCED SPECTRAL DENSITY MAPPING REMARK 1 REF BIOCHEMISTRY V. 36 4015 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.H.PAPAVOINE,J.M.AELEN,R.N.KONINGS,C.W.HILBERS, REMARK 1 AUTH 2 F.J.VAN DE VEN REMARK 1 TITL NMR STUDIES OF THE MAJOR COAT PROTEIN OF BACTERIOPHAGE M13. REMARK 1 TITL 2 STRUCTURAL INFORMATION OF GVIIIP IN DODECYLPHOSPHOCHOLINE REMARK 1 TITL 3 MICELLES REMARK 1 REF EUR.J.BIOCHEM. V. 232 490 1995 REMARK 1 REFN ISSN 0014-2956 REMARK 1 REFERENCE 3 REMARK 1 AUTH C.H.PAPAVOINE,R.N.KONINGS,C.W.HILBERS,F.J.VAN DE VEN REMARK 1 TITL LOCATION OF M13 COAT PROTEIN IN SODIUM DODECYL SULFATE REMARK 1 TITL 2 MICELLES AS DETERMINED BY NMR REMARK 1 REF BIOCHEMISTRY V. 33 12990 1994 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH F.J.VAN DE VEN,J.W.VAN OS,J.M.AELEN,S.S.WYMENGA, REMARK 1 AUTH 2 M.L.REMEROWSKI,R.N.KONINGS,C.W.HILBERS REMARK 1 TITL ASSIGNMENT OF 1H, 15N, AND BACKBONE 13C RESONANCES IN REMARK 1 TITL 2 DETERGENT-SOLUBILIZED M13 COAT PROTEIN VIA MULTINUCLEAR REMARK 1 TITL 3 MULTIDIMENSIONAL NMR: A MODEL FOR THE COAT PROTEIN MONOMER REMARK 1 REF BIOCHEMISTRY V. 32 8322 1993 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CPB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177939. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 311 REMARK 210 PH : 4.9 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY; TOCSY; NOESY; NOESY REMARK 210 -HMQC (15N AND 13C); TOCSY-HMQC REMARK 210 (15N); HCCH-TOCSY; HMQC-J; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 400 MHZ; 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY; AM; AMX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.1 REMARK 210 METHOD USED : RESTRAINED MOLECULAR DYNAMICS, REMARK 210 SIMULATED ANNEALING, THIS REMARK 210 VERSION OF X-PLOR WAS EXTENDED REMARK 210 FOR FLOATING CHIRALITY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY, DISTANCE REMARK 210 RESTRAINTS SMALLER THAN 0.5 A, REMARK 210 DIHEDRAL VIOLATIONS SMALLER THAN REMARK 210 5 DEGREES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N -LABELED M13 COAT PROTEIN SOLUBILIZED REMARK 210 IN DEUTERATED DODECYLPHOSPHOCHOLINE MICELLES (CONCENTRATION COAT/ REMARK 210 DODPCHO = 1:200) REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 4 75.33 -69.48 REMARK 500 1 LYS A 40 -71.71 -81.66 REMARK 500 1 PHE A 45 45.63 -91.55 REMARK 500 1 LYS A 48 -172.71 44.96 REMARK 500 2 ASP A 4 76.11 -104.27 REMARK 500 2 LYS A 40 -70.45 -74.65 REMARK 500 2 THR A 46 36.10 -96.53 REMARK 500 2 LYS A 48 91.90 38.85 REMARK 500 2 ALA A 49 108.87 -55.72 REMARK 500 3 GLU A 2 80.49 -67.59 REMARK 500 3 ASP A 4 -85.48 -119.39 REMARK 500 3 ASP A 5 135.20 177.48 REMARK 500 3 LYS A 8 -30.67 -38.91 REMARK 500 3 LYS A 40 -71.37 -78.68 REMARK 500 3 THR A 46 28.24 -150.24 REMARK 500 3 LYS A 48 92.91 39.53 REMARK 500 4 GLU A 2 47.56 -98.78 REMARK 500 4 PHE A 45 -77.81 -57.40 REMARK 500 4 THR A 46 -39.37 -131.94 REMARK 500 4 LYS A 48 76.66 39.02 REMARK 500 4 ALA A 49 -175.15 -57.72 REMARK 500 5 ASP A 4 -78.10 -48.08 REMARK 500 5 ASP A 5 128.35 -174.91 REMARK 500 5 ALA A 9 -60.54 -93.89 REMARK 500 5 LYS A 48 75.70 38.98 REMARK 500 6 ASP A 4 -76.95 -140.39 REMARK 500 6 ASP A 5 130.17 -174.12 REMARK 500 6 LYS A 43 -70.99 -35.54 REMARK 500 6 THR A 46 -81.40 -91.71 REMARK 500 6 SER A 47 106.03 50.26 REMARK 500 6 LYS A 48 84.94 27.49 REMARK 500 7 ASP A 4 -80.32 -49.66 REMARK 500 7 ASP A 5 134.40 -176.33 REMARK 500 7 ALA A 18 -38.09 -39.81 REMARK 500 7 LYS A 44 -84.83 -100.18 REMARK 500 7 LYS A 48 -90.56 34.51 REMARK 500 8 ASP A 4 -78.48 -101.83 REMARK 500 8 ASP A 5 126.94 -175.30 REMARK 500 8 PHE A 45 51.30 -99.63 REMARK 500 8 SER A 47 172.86 53.08 REMARK 500 8 LYS A 48 -89.26 32.48 REMARK 500 9 ASP A 4 -78.53 -49.60 REMARK 500 9 ASP A 5 130.82 -179.96 REMARK 500 9 TYR A 24 30.82 -90.99 REMARK 500 9 LYS A 40 -71.27 -77.52 REMARK 500 9 LYS A 48 92.18 -30.17 REMARK 500 9 ALA A 49 -171.39 -60.88 REMARK 500 10 ASP A 4 -77.12 -99.78 REMARK 500 10 ASP A 5 129.40 -172.50 REMARK 500 10 THR A 46 -69.69 -139.47 REMARK 500 REMARK 500 THIS ENTRY HAS 149 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2CPB A 1 50 UNP P69541 COATB_BPM13 24 73 SEQRES 1 A 50 ALA GLU GLY ASP ASP PRO ALA LYS ALA ALA PHE ASN SER SEQRES 2 A 50 LEU GLN ALA SER ALA THR GLU TYR ILE GLY TYR ALA TRP SEQRES 3 A 50 ALA MET VAL VAL VAL ILE VAL GLY ALA THR ILE GLY ILE SEQRES 4 A 50 LYS LEU PHE LYS LYS PHE THR SER LYS ALA SER HELIX 1 1 PRO A 6 GLY A 23 1 18 HELIX 2 2 ALA A 25 LYS A 44 1 20 HELIX 3 3 ALA A 27 ILE A 32 5 6 HELIX 4 7 TRP A 26 ILE A 37 1 12 HELIX 5 9 GLY A 34 ILE A 37 1 4 HELIX 6 6 PHE A 45 SER A 47 5 3 HELIX 7 8 TRP A 26 VAL A 30 1 5 HELIX 8 10 ALA A 27 ILE A 37 1 11 HELIX 9 11 TRP A 26 VAL A 29 1 4 HELIX 10 12 ASN A 12 GLN A 15 1 4 HELIX 11 13 ILE A 22 TYR A 24 5 3 HELIX 12 14 GLY A 23 ALA A 25 5 3 SHEET 1 A 3 ALA A 7 ALA A 9 0 SHEET 2 A 3 ALA A 10 SER A 13 1 N ALA A 10 O LYS A 8 SHEET 3 A 3 LEU A 14 ALA A 16 1 N GLN A 15 O PHE A 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1