HEADER GENE REGULATION 19-MAY-05 2CPD TITLE SOLUTION STRUCTURE OF THE RNA RECOGNITION MOTIF OF HUMAN APOBEC-1 TITLE 2 COMPLEMENTATION FACTOR, ACF COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOBEC-1 STIMULATING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: APOBEC-1 COMPLEMENTATION FACTOR ISOFORM 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ASP; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040531-03; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RNA RECOGNITION MOTIF, RRM, RNP, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, GENE KEYWDS 4 REGULATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CPD 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CPD 1 VERSN REVDAT 1 19-NOV-05 2CPD 0 JRNL AUTH T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RNA RECOGNITION MOTIF OF HUMAN JRNL TITL 2 APOBEC-1 COMPLEMENTATION FACTOR, ACF JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CPD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024476. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.01MM 13C/15N-PROTEIN; 20MM D REMARK 210 -TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801/20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.925, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 237 44.28 73.83 REMARK 500 1 ARG A 266 -70.90 -31.86 REMARK 500 1 ASN A 287 104.72 -37.10 REMARK 500 1 ASP A 292 28.91 37.73 REMARK 500 2 GLU A 224 102.94 -58.16 REMARK 500 2 ARG A 266 -72.04 -31.51 REMARK 500 2 ASN A 287 108.70 -48.80 REMARK 500 2 ASP A 292 24.96 44.97 REMARK 500 2 PRO A 295 93.94 -69.72 REMARK 500 2 ASP A 307 105.22 -59.20 REMARK 500 3 THR A 226 45.30 -83.34 REMARK 500 3 ASN A 237 52.62 70.68 REMARK 500 3 ARG A 266 -73.28 -30.66 REMARK 500 3 ASN A 287 93.79 -36.74 REMARK 500 3 PRO A 311 91.61 -69.75 REMARK 500 3 SER A 313 176.96 -58.08 REMARK 500 4 ASN A 237 47.95 71.92 REMARK 500 4 ARG A 266 -72.77 -31.11 REMARK 500 4 ASN A 287 121.14 -39.87 REMARK 500 4 SER A 309 108.31 -37.32 REMARK 500 5 SER A 218 153.14 -46.74 REMARK 500 5 ASN A 237 35.84 71.26 REMARK 500 5 ARG A 266 -75.37 -28.66 REMARK 500 5 ASP A 292 26.51 41.86 REMARK 500 5 PRO A 295 91.93 -69.76 REMARK 500 6 ASN A 237 53.97 72.90 REMARK 500 6 ARG A 266 -70.25 -30.89 REMARK 500 6 ASN A 287 91.82 -49.52 REMARK 500 6 ASP A 292 36.28 34.94 REMARK 500 7 ASP A 223 104.60 -50.01 REMARK 500 7 SER A 229 99.35 -65.66 REMARK 500 7 ASN A 237 51.23 71.88 REMARK 500 7 ARG A 266 -71.98 -32.01 REMARK 500 7 ASN A 287 95.96 -41.15 REMARK 500 7 ASP A 292 24.97 41.92 REMARK 500 8 SER A 218 42.08 37.85 REMARK 500 8 ASP A 223 120.58 -172.17 REMARK 500 8 GLU A 260 -64.33 -96.89 REMARK 500 8 ARG A 266 -68.09 -29.40 REMARK 500 8 ASN A 287 97.96 -36.29 REMARK 500 8 ASP A 292 29.25 39.62 REMARK 500 8 PRO A 295 94.78 -69.76 REMARK 500 8 LYS A 306 117.14 -171.75 REMARK 500 8 PRO A 311 -175.28 -69.73 REMARK 500 9 ASP A 225 97.19 -50.22 REMARK 500 9 ASN A 237 54.00 71.80 REMARK 500 9 ARG A 266 -72.23 -31.78 REMARK 500 9 ASN A 287 99.95 -38.28 REMARK 500 9 ASP A 292 25.20 42.15 REMARK 500 9 PRO A 295 92.00 -69.78 REMARK 500 REMARK 500 THIS ENTRY HAS 119 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001001710.1 RELATED DB: TARGETDB DBREF 2CPD A 223 308 UNP Q9NQ93 Q9NQ93_HUMAN 223 308 SEQADV 2CPD GLY A 216 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD SER A 217 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD SER A 218 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD GLY A 219 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD SER A 220 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD SER A 221 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD GLY A 222 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD SER A 309 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD GLY A 310 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD PRO A 311 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD SER A 312 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD SER A 313 UNP Q9NQ93 CLONING ARTIFACT SEQADV 2CPD GLY A 314 UNP Q9NQ93 CLONING ARTIFACT SEQRES 1 A 99 GLY SER SER GLY SER SER GLY ASP GLU ASP THR MET SER SEQRES 2 A 99 SER VAL LYS ILE LEU TYR VAL ARG ASN LEU MET LEU SER SEQRES 3 A 99 THR SER GLU GLU MET ILE GLU LYS GLU PHE ASN ASN ILE SEQRES 4 A 99 LYS PRO GLY ALA VAL GLU ARG VAL LYS LYS ILE ARG ASP SEQRES 5 A 99 TYR ALA PHE VAL HIS PHE SER ASN ARG GLU ASP ALA VAL SEQRES 6 A 99 GLU ALA MET LYS ALA LEU ASN GLY LYS VAL LEU ASP GLY SEQRES 7 A 99 SER PRO ILE GLU VAL THR LEU ALA LYS PRO VAL ASP LYS SEQRES 8 A 99 ASP SER SER GLY PRO SER SER GLY HELIX 1 1 GLU A 244 ASN A 252 1 9 HELIX 2 2 ARG A 276 LEU A 286 1 11 SHEET 1 A 6 VAL A 259 LYS A 264 0 SHEET 2 A 6 TYR A 268 PHE A 273 -1 SHEET 3 A 6 ILE A 232 ARG A 236 -1 SHEET 4 A 6 SER A 294 PRO A 295 -1 SHEET 5 A 6 GLU A 297 THR A 299 1 SHEET 6 A 6 VAL A 290 LEU A 291 -1 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1