HEADER GENE REGULATION 19-MAY-05 2CPN TITLE SOLUTION STRUCTURE OF THE SECOND DSRBD OF TAR RNA-BINDING PROTEIN 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAR RNA-BINDING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOUBLE-STRANDED RNA BINDING DOMAIN; COMPND 5 SYNONYM: TRANS-ACTIVATION RESPONSIVE RNA-BINDING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TARBP2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040322-28; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS DOUBLE-STRANDED RNA BINDING DOMAIN, DSRBD, DSRM., STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, GENE REGULATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CPN 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CPN 1 VERSN REVDAT 1 19-NOV-05 2CPN 0 JRNL AUTH T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND DSRBD OF TAR RNA-BINDING JRNL TITL 2 PROTEIN 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CPN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024483. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.15MM 13C/15N-PROTEIN; 20MM D REMARK 210 -TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801/20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.925, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 157 161.57 -42.18 REMARK 500 1 THR A 181 -60.91 -92.58 REMARK 500 1 PRO A 186 -169.22 -69.72 REMARK 500 2 LEU A 175 143.21 -37.77 REMARK 500 2 PRO A 186 -179.34 -69.78 REMARK 500 3 ASN A 159 144.05 -170.92 REMARK 500 3 PRO A 186 -168.42 -69.73 REMARK 500 3 SER A 229 -61.46 -98.22 REMARK 500 4 ASN A 159 141.20 -171.25 REMARK 500 4 PRO A 186 -164.24 -69.75 REMARK 500 4 GLU A 199 -72.37 -34.01 REMARK 500 4 SER A 230 54.93 -90.87 REMARK 500 5 SER A 145 41.17 -92.41 REMARK 500 5 SER A 156 47.93 -108.23 REMARK 500 5 PRO A 186 -174.77 -69.74 REMARK 500 5 ARG A 189 51.91 -113.34 REMARK 500 5 SER A 226 165.26 -49.87 REMARK 500 6 LEU A 175 143.29 -38.77 REMARK 500 6 PRO A 186 -165.55 -69.78 REMARK 500 6 ALA A 213 -39.61 -35.80 REMARK 500 6 SER A 230 -62.30 -129.38 REMARK 500 7 SER A 145 105.90 -55.72 REMARK 500 7 PRO A 186 -169.32 -69.80 REMARK 500 8 SER A 147 84.37 -64.67 REMARK 500 8 ASN A 159 139.85 -171.05 REMARK 500 8 PRO A 186 -173.13 -69.79 REMARK 500 8 GLU A 199 -70.26 -34.15 REMARK 500 8 ALA A 213 -37.62 -35.24 REMARK 500 9 SER A 144 127.90 -39.91 REMARK 500 9 ASN A 159 155.21 -40.09 REMARK 500 9 LEU A 164 -35.97 -39.81 REMARK 500 9 LEU A 175 142.05 -34.25 REMARK 500 9 PRO A 186 -165.56 -69.77 REMARK 500 9 GLU A 199 -73.79 -34.14 REMARK 500 10 VAL A 151 117.97 -38.65 REMARK 500 10 SER A 156 -55.03 -132.47 REMARK 500 10 LEU A 175 142.35 -34.03 REMARK 500 10 PRO A 186 -164.76 -69.79 REMARK 500 10 ALA A 213 -31.38 -39.71 REMARK 500 10 PRO A 228 -174.69 -69.77 REMARK 500 11 SER A 147 -59.36 -122.07 REMARK 500 11 PRO A 186 -174.13 -69.75 REMARK 500 11 ALA A 213 -31.04 -35.99 REMARK 500 11 SER A 230 155.27 -48.37 REMARK 500 12 SER A 147 44.89 34.69 REMARK 500 12 GLU A 157 45.78 -82.07 REMARK 500 12 LEU A 175 143.99 -39.70 REMARK 500 12 PRO A 186 -172.23 -69.76 REMARK 500 12 GLU A 199 -74.33 -34.30 REMARK 500 12 PRO A 228 90.21 -69.83 REMARK 500 REMARK 500 THIS ENTRY HAS 86 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001000376.1 RELATED DB: TARGETDB DBREF 2CPN A 150 225 UNP Q15633 TRBP2_HUMAN 150 225 SEQADV 2CPN GLY A 143 UNP Q15633 CLONING ARTIFACT SEQADV 2CPN SER A 144 UNP Q15633 CLONING ARTIFACT SEQADV 2CPN SER A 145 UNP Q15633 CLONING ARTIFACT SEQADV 2CPN GLY A 146 UNP Q15633 CLONING ARTIFACT SEQADV 2CPN SER A 147 UNP Q15633 CLONING ARTIFACT SEQADV 2CPN SER A 148 UNP Q15633 CLONING ARTIFACT SEQADV 2CPN GLY A 149 UNP Q15633 CLONING ARTIFACT SEQADV 2CPN SER A 226 UNP Q15633 CLONING ARTIFACT SEQADV 2CPN GLY A 227 UNP Q15633 CLONING ARTIFACT SEQADV 2CPN PRO A 228 UNP Q15633 CLONING ARTIFACT SEQADV 2CPN SER A 229 UNP Q15633 CLONING ARTIFACT SEQADV 2CPN SER A 230 UNP Q15633 CLONING ARTIFACT SEQADV 2CPN GLY A 231 UNP Q15633 CLONING ARTIFACT SEQRES 1 A 89 GLY SER SER GLY SER SER GLY PRO VAL SER PRO GLN GLN SEQRES 2 A 89 SER GLU CYS ASN PRO VAL GLY ALA LEU GLN GLU LEU VAL SEQRES 3 A 89 VAL GLN LYS GLY TRP ARG LEU PRO GLU TYR THR VAL THR SEQRES 4 A 89 GLN GLU SER GLY PRO ALA HIS ARG LYS GLU PHE THR MET SEQRES 5 A 89 THR CYS ARG VAL GLU ARG PHE ILE GLU ILE GLY SER GLY SEQRES 6 A 89 THR SER LYS LYS LEU ALA LYS ARG ASN ALA ALA ALA LYS SEQRES 7 A 89 MET LEU LEU ARG VAL SER GLY PRO SER SER GLY HELIX 1 1 VAL A 161 LYS A 171 1 11 HELIX 2 2 LYS A 210 VAL A 225 1 16 SHEET 1 A 3 GLU A 177 SER A 184 0 SHEET 2 A 3 GLU A 191 VAL A 198 -1 O THR A 193 N GLN A 182 SHEET 3 A 3 PHE A 201 GLY A 207 -1 O GLU A 203 N CYS A 196 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1