data_2CPT # _entry.id 2CPT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2CPT pdb_00002cpt 10.2210/pdb2cpt/pdb RCSB RCSB024486 ? ? WWPDB D_1000024486 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hss001000811.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CPT _pdbx_database_status.recvd_initial_deposition_date 2005-05-19 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Suetake, T.' 1 'Hayashi, F.' 2 'Yokoyama, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title 'Solution structure of MIT domain from human SKD1' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Suetake, T.' 1 ? primary 'Hayashi, F.' 2 ? primary 'Yokoyama, S.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Vacuolar sorting protein 4b' _entity.formula_weight 12671.952 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'MIT domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'SKD1 protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLK EYLKNKEKKAQKPVKEGQPSPADEKGNDSDGSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLK EYLKNKEKKAQKPVKEGQPSPADEKGNDSDGSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hss001000811.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 MET n 1 9 SER n 1 10 SER n 1 11 THR n 1 12 SER n 1 13 PRO n 1 14 ASN n 1 15 LEU n 1 16 GLN n 1 17 LYS n 1 18 ALA n 1 19 ILE n 1 20 ASP n 1 21 LEU n 1 22 ALA n 1 23 SER n 1 24 LYS n 1 25 ALA n 1 26 ALA n 1 27 GLN n 1 28 GLU n 1 29 ASP n 1 30 LYS n 1 31 ALA n 1 32 GLY n 1 33 ASN n 1 34 TYR n 1 35 GLU n 1 36 GLU n 1 37 ALA n 1 38 LEU n 1 39 GLN n 1 40 LEU n 1 41 TYR n 1 42 GLN n 1 43 HIS n 1 44 ALA n 1 45 VAL n 1 46 GLN n 1 47 TYR n 1 48 PHE n 1 49 LEU n 1 50 HIS n 1 51 VAL n 1 52 VAL n 1 53 LYS n 1 54 TYR n 1 55 GLU n 1 56 ALA n 1 57 GLN n 1 58 GLY n 1 59 ASP n 1 60 LYS n 1 61 ALA n 1 62 LYS n 1 63 GLN n 1 64 SER n 1 65 ILE n 1 66 ARG n 1 67 ALA n 1 68 LYS n 1 69 CYS n 1 70 THR n 1 71 GLU n 1 72 TYR n 1 73 LEU n 1 74 ASP n 1 75 ARG n 1 76 ALA n 1 77 GLU n 1 78 LYS n 1 79 LEU n 1 80 LYS n 1 81 GLU n 1 82 TYR n 1 83 LEU n 1 84 LYS n 1 85 ASN n 1 86 LYS n 1 87 GLU n 1 88 LYS n 1 89 LYS n 1 90 ALA n 1 91 GLN n 1 92 LYS n 1 93 PRO n 1 94 VAL n 1 95 LYS n 1 96 GLU n 1 97 GLY n 1 98 GLN n 1 99 PRO n 1 100 SER n 1 101 PRO n 1 102 ALA n 1 103 ASP n 1 104 GLU n 1 105 LYS n 1 106 GLY n 1 107 ASN n 1 108 ASP n 1 109 SER n 1 110 ASP n 1 111 GLY n 1 112 SER n 1 113 GLY n 1 114 PRO n 1 115 SER n 1 116 SER n 1 117 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'VPS4B, SKD1, VPS42' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P040607-08 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VPS4B_HUMAN _struct_ref.pdbx_db_accession O75351 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKE KKAQKPVKEGQPSPADEKGNDSDG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2CPT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 111 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O75351 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 104 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 111 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2CPT GLY A 1 ? UNP O75351 ? ? 'cloning artifact' 1 1 1 2CPT SER A 2 ? UNP O75351 ? ? 'cloning artifact' 2 2 1 2CPT SER A 3 ? UNP O75351 ? ? 'cloning artifact' 3 3 1 2CPT GLY A 4 ? UNP O75351 ? ? 'cloning artifact' 4 4 1 2CPT SER A 5 ? UNP O75351 ? ? 'cloning artifact' 5 5 1 2CPT SER A 6 ? UNP O75351 ? ? 'cloning artifact' 6 6 1 2CPT GLY A 7 ? UNP O75351 ? ? 'cloning artifact' 7 7 1 2CPT SER A 112 ? UNP O75351 ? ? 'cloning artifact' 112 8 1 2CPT GLY A 113 ? UNP O75351 ? ? 'cloning artifact' 113 9 1 2CPT PRO A 114 ? UNP O75351 ? ? 'cloning artifact' 114 10 1 2CPT SER A 115 ? UNP O75351 ? ? 'cloning artifact' 115 11 1 2CPT SER A 116 ? UNP O75351 ? ? 'cloning artifact' 116 12 1 2CPT GLY A 117 ? UNP O75351 ? ? 'cloning artifact' 117 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '100mM NaCl' _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.11mM 13C, 15N-labeled protein; 20mM d-Tris-HCl; 100mM NaCl; 1mM d10-DTT; 0.02% NaN3' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 INOVA Varian 900 ? 2 INOVA Varian 800 ? # _pdbx_nmr_refine.entry_id 2CPT _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2CPT _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violation, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2CPT _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C VARIAN 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B. A.' 3 'data analysis' KUJIRA 0.927 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2CPT _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2CPT _struct.title 'Solution structure of MIT domain from human SKD1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CPT _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text ;MIT, SKD1, helix bundle, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, PROTEIN TRANSPORT ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 12 ? GLY A 32 ? SER A 12 GLY A 32 1 ? 21 HELX_P HELX_P2 2 ASN A 33 ? TYR A 54 ? ASN A 33 TYR A 54 1 ? 22 HELX_P HELX_P3 3 GLY A 58 ? GLU A 87 ? GLY A 58 GLU A 87 1 ? 30 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 2CPT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2CPT _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 HIS 43 43 43 HIS HIS A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 GLN 46 46 46 GLN GLN A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 HIS 50 50 50 HIS HIS A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 CYS 69 69 69 CYS CYS A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 TYR 72 72 72 TYR TYR A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 GLN 91 91 91 GLN GLN A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 GLN 98 98 98 GLN GLN A . n A 1 99 PRO 99 99 99 PRO PRO A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 ASN 107 107 107 ASN ASN A . n A 1 108 ASP 108 108 108 ASP ASP A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 PRO 114 114 114 PRO PRO A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 GLY 117 117 117 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-19 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 5 ? ? -45.74 99.81 2 1 SER A 6 ? ? -172.11 120.74 3 1 SER A 10 ? ? -57.71 104.55 4 1 GLU A 55 ? ? -83.16 37.76 5 1 ALA A 56 ? ? -65.28 -177.72 6 1 GLN A 57 ? ? -127.97 -63.87 7 1 ASP A 59 ? ? -38.94 -38.55 8 1 GLU A 77 ? ? -39.28 -39.73 9 1 LYS A 89 ? ? -37.55 137.94 10 1 GLU A 104 ? ? -35.17 151.70 11 1 LYS A 105 ? ? -43.76 165.46 12 1 ASN A 107 ? ? -43.85 161.10 13 1 SER A 116 ? ? -50.11 92.66 14 2 SER A 6 ? ? -174.08 122.27 15 2 SER A 9 ? ? -92.13 42.26 16 2 SER A 12 ? ? -40.78 155.77 17 2 HIS A 50 ? ? -39.84 -39.89 18 2 GLU A 55 ? ? -84.00 35.45 19 2 GLN A 57 ? ? -100.84 -72.02 20 2 GLN A 63 ? ? -37.75 -37.17 21 2 LEU A 79 ? ? -38.10 -32.56 22 2 LYS A 88 ? ? -52.46 94.19 23 2 ALA A 90 ? ? -51.15 105.94 24 2 VAL A 94 ? ? -113.96 76.90 25 2 PRO A 99 ? ? -69.82 -166.90 26 2 ALA A 102 ? ? -50.84 105.40 27 2 PRO A 114 ? ? -69.70 -178.40 28 3 SER A 3 ? ? 39.37 42.08 29 3 SER A 6 ? ? -61.23 98.57 30 3 GLU A 55 ? ? -83.10 39.67 31 3 ALA A 56 ? ? -47.17 161.37 32 3 GLU A 87 ? ? -49.77 173.49 33 3 LYS A 89 ? ? -38.16 97.69 34 3 GLN A 91 ? ? -66.68 75.91 35 3 VAL A 94 ? ? -37.88 135.64 36 3 GLU A 96 ? ? -68.47 91.32 37 3 PRO A 99 ? ? -69.72 -175.35 38 3 ASP A 110 ? ? -171.74 136.19 39 3 PRO A 114 ? ? -69.78 -177.64 40 4 SER A 3 ? ? -47.75 152.87 41 4 GLU A 55 ? ? -82.65 38.88 42 4 LYS A 92 ? ? -38.92 144.90 43 5 SER A 12 ? ? -47.22 154.40 44 5 ALA A 56 ? ? -41.86 155.99 45 5 GLN A 57 ? ? -108.77 -64.01 46 5 GLN A 91 ? ? -60.96 98.06 47 6 GLU A 55 ? ? -82.21 40.01 48 6 GLN A 57 ? ? -125.29 -67.21 49 6 LYS A 60 ? ? -58.27 -70.43 50 6 LEU A 79 ? ? -36.06 -30.59 51 6 GLU A 87 ? ? -38.18 125.60 52 6 LYS A 89 ? ? -34.34 121.19 53 6 GLN A 91 ? ? -37.94 148.84 54 6 LYS A 92 ? ? -38.36 143.91 55 6 PRO A 99 ? ? -69.74 93.61 56 6 SER A 115 ? ? -171.81 135.13 57 7 SER A 3 ? ? -38.93 148.31 58 7 GLU A 55 ? ? -82.15 39.88 59 7 ALA A 56 ? ? -55.90 174.92 60 7 GLU A 87 ? ? -49.59 165.14 61 7 LYS A 92 ? ? -174.23 140.72 62 7 LYS A 95 ? ? -38.62 149.07 63 7 ASP A 103 ? ? -169.83 107.64 64 8 SER A 2 ? ? -173.99 125.63 65 8 LEU A 38 ? ? -54.05 -70.19 66 8 HIS A 50 ? ? -38.05 -35.13 67 8 LYS A 53 ? ? -82.49 -70.94 68 8 GLU A 55 ? ? -84.83 33.87 69 8 ALA A 56 ? ? -47.88 150.12 70 8 GLN A 57 ? ? -107.37 -66.88 71 8 LYS A 60 ? ? -72.26 -73.05 72 8 PRO A 99 ? ? -69.82 -178.74 73 8 SER A 116 ? ? -126.97 -52.46 74 9 GLU A 55 ? ? -81.26 43.71 75 9 LYS A 95 ? ? 36.49 39.45 76 9 PRO A 101 ? ? -69.74 2.42 77 10 THR A 11 ? ? -170.95 141.27 78 10 LYS A 53 ? ? -92.42 -61.82 79 10 GLU A 55 ? ? -86.88 32.82 80 10 GLN A 57 ? ? -93.01 -71.93 81 10 GLU A 87 ? ? -57.70 -177.28 82 10 LYS A 89 ? ? -34.46 115.91 83 10 LYS A 95 ? ? -56.30 98.26 84 10 PRO A 99 ? ? -69.75 -170.56 85 11 SER A 10 ? ? -80.65 43.16 86 11 SER A 12 ? ? -47.49 153.07 87 11 GLU A 55 ? ? -83.24 37.29 88 11 GLN A 57 ? ? -120.85 -52.68 89 11 LEU A 79 ? ? -34.69 -32.31 90 11 GLU A 87 ? ? -45.15 165.23 91 11 ASP A 110 ? ? -103.40 -61.13 92 11 PRO A 114 ? ? -69.78 2.02 93 12 THR A 11 ? ? -173.29 141.03 94 12 LYS A 53 ? ? -67.53 -70.81 95 12 GLU A 55 ? ? -79.24 44.79 96 12 ALA A 56 ? ? -56.31 175.20 97 12 LYS A 62 ? ? -54.57 -71.34 98 12 ALA A 90 ? ? -36.97 -33.57 99 12 GLN A 91 ? ? -52.48 -175.11 100 12 LYS A 92 ? ? -34.42 142.98 101 12 LYS A 95 ? ? -39.79 127.97 102 12 GLU A 96 ? ? -49.60 160.96 103 12 ASN A 107 ? ? -174.24 125.27 104 12 SER A 109 ? ? -170.79 147.40 105 13 THR A 11 ? ? -34.74 130.19 106 13 SER A 12 ? ? -43.15 153.06 107 13 GLU A 55 ? ? -80.43 42.94 108 13 LEU A 79 ? ? -39.11 -28.71 109 13 GLU A 87 ? ? -48.57 151.58 110 13 LYS A 88 ? ? -51.85 103.22 111 13 LYS A 89 ? ? -44.61 153.77 112 13 GLU A 96 ? ? -131.29 -61.72 113 13 PRO A 99 ? ? -69.81 87.39 114 13 PRO A 114 ? ? -69.79 -175.30 115 14 SER A 9 ? ? -36.42 105.12 116 14 SER A 12 ? ? -44.74 155.24 117 14 HIS A 50 ? ? -36.79 -36.24 118 14 LYS A 53 ? ? -95.53 -62.94 119 14 GLU A 55 ? ? -83.60 36.21 120 14 ASP A 59 ? ? -37.41 -28.77 121 14 GLU A 87 ? ? -38.01 155.84 122 14 LYS A 88 ? ? -34.54 136.07 123 14 ALA A 90 ? ? -49.34 152.64 124 14 LYS A 95 ? ? -172.54 110.62 125 14 PRO A 114 ? ? -69.69 -168.57 126 15 MET A 8 ? ? -87.69 43.64 127 15 THR A 11 ? ? -172.49 126.88 128 15 SER A 12 ? ? -40.55 151.14 129 15 GLN A 16 ? ? -37.62 -39.62 130 15 LYS A 89 ? ? -37.10 134.30 131 15 GLN A 91 ? ? -39.15 129.62 132 15 PRO A 93 ? ? -69.75 -178.79 133 15 GLN A 98 ? ? -171.60 144.35 134 15 PRO A 99 ? ? -69.77 -175.52 135 15 PRO A 114 ? ? -69.77 -175.75 136 16 SER A 9 ? ? -129.20 -52.03 137 16 SER A 12 ? ? -43.69 154.14 138 16 GLU A 55 ? ? -85.47 38.08 139 16 VAL A 94 ? ? -58.49 86.82 140 16 PRO A 99 ? ? -69.85 -176.09 141 16 PRO A 101 ? ? -69.76 87.92 142 16 ASP A 103 ? ? -170.42 131.03 143 16 SER A 109 ? ? -54.27 97.87 144 16 SER A 116 ? ? 39.88 41.82 145 17 SER A 3 ? ? -46.22 109.01 146 17 SER A 12 ? ? -46.87 152.46 147 17 HIS A 50 ? ? -39.90 -32.82 148 17 LYS A 53 ? ? -61.57 -72.10 149 17 ALA A 56 ? ? -35.37 152.82 150 17 GLN A 57 ? ? -107.62 -68.52 151 17 ASP A 59 ? ? -35.77 -36.76 152 17 GLN A 98 ? ? -34.95 140.83 153 17 PRO A 99 ? ? -69.78 -176.63 154 17 PRO A 114 ? ? -69.73 -174.08 155 18 SER A 12 ? ? -36.17 147.14 156 18 HIS A 50 ? ? -37.70 -34.32 157 18 GLU A 55 ? ? -80.37 43.10 158 18 ALA A 56 ? ? -55.08 171.40 159 18 GLN A 57 ? ? -134.57 -57.48 160 18 LYS A 86 ? ? -63.44 -70.59 161 18 GLU A 87 ? ? -54.29 107.15 162 18 LYS A 88 ? ? -34.22 139.15 163 18 PRO A 93 ? ? -69.80 -169.10 164 18 LYS A 95 ? ? 36.34 44.86 165 18 GLN A 98 ? ? -111.03 78.07 166 19 SER A 5 ? ? 70.45 41.95 167 19 MET A 8 ? ? -38.83 109.36 168 19 HIS A 50 ? ? -37.11 -28.90 169 19 LYS A 53 ? ? -70.38 -70.19 170 19 ALA A 56 ? ? -37.66 157.07 171 19 LYS A 86 ? ? -85.10 -70.12 172 19 GLU A 87 ? ? -37.99 106.45 173 19 VAL A 94 ? ? -39.03 122.57 174 19 GLU A 96 ? ? -50.54 178.20 175 19 PRO A 101 ? ? -69.76 -174.87 176 20 SER A 12 ? ? -49.51 153.32 177 20 HIS A 50 ? ? -38.67 -38.51 178 20 LYS A 53 ? ? -92.91 -60.24 179 20 GLU A 55 ? ? -82.78 39.85 180 20 GLN A 57 ? ? -127.94 -68.03 181 20 LEU A 79 ? ? -34.85 -38.54 182 20 GLU A 81 ? ? -49.41 -19.91 183 20 LYS A 86 ? ? -66.02 -70.75 184 20 GLU A 87 ? ? -82.03 39.16 185 20 ALA A 90 ? ? -124.23 -63.80 186 20 PRO A 99 ? ? -69.79 -175.91 187 20 ASP A 103 ? ? -36.32 140.95 188 20 SER A 112 ? ? -36.14 150.18 189 20 SER A 115 ? ? -59.08 173.53 #