data_2CPZ # _entry.id 2CPZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2CPZ pdb_00002cpz 10.2210/pdb2cpz/pdb RCSB RCSB024490 ? ? WWPDB D_1000024490 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hss001001546 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CPZ _pdbx_database_status.recvd_initial_deposition_date 2005-05-19 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tsuda, K.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'solution structure of RNA binding domain 3 in CUG triplet repeat RNA-binding protein 1' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tsuda, K.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Terada, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'CUG triplet repeat RNA-binding protein 1' _entity.formula_weight 12264.778 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RNA recognition motif' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CUG-BP1, RNA-binding protein BRUNOL-2, Deadenylation factor CUG-BP, 50 kDa Nuclear polyadenylated RNA-binding protein, EDEN-BP' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSA QAAIQSMNGFQIGMKRLKVQLKRSKNDSKSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSA QAAIQSMNGFQIGMKRLKVQLKRSKNDSKSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hss001001546 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 LEU n 1 9 THR n 1 10 GLN n 1 11 GLN n 1 12 SER n 1 13 ILE n 1 14 GLY n 1 15 ALA n 1 16 ALA n 1 17 GLY n 1 18 SER n 1 19 GLN n 1 20 LYS n 1 21 GLU n 1 22 GLY n 1 23 PRO n 1 24 GLU n 1 25 GLY n 1 26 ALA n 1 27 ASN n 1 28 LEU n 1 29 PHE n 1 30 ILE n 1 31 TYR n 1 32 HIS n 1 33 LEU n 1 34 PRO n 1 35 GLN n 1 36 GLU n 1 37 PHE n 1 38 GLY n 1 39 ASP n 1 40 GLN n 1 41 ASP n 1 42 LEU n 1 43 LEU n 1 44 GLN n 1 45 MET n 1 46 PHE n 1 47 MET n 1 48 PRO n 1 49 PHE n 1 50 GLY n 1 51 ASN n 1 52 VAL n 1 53 VAL n 1 54 SER n 1 55 ALA n 1 56 LYS n 1 57 VAL n 1 58 PHE n 1 59 ILE n 1 60 ASP n 1 61 LYS n 1 62 GLN n 1 63 THR n 1 64 ASN n 1 65 LEU n 1 66 SER n 1 67 LYS n 1 68 CYS n 1 69 PHE n 1 70 GLY n 1 71 PHE n 1 72 VAL n 1 73 SER n 1 74 TYR n 1 75 ASP n 1 76 ASN n 1 77 PRO n 1 78 VAL n 1 79 SER n 1 80 ALA n 1 81 GLN n 1 82 ALA n 1 83 ALA n 1 84 ILE n 1 85 GLN n 1 86 SER n 1 87 MET n 1 88 ASN n 1 89 GLY n 1 90 PHE n 1 91 GLN n 1 92 ILE n 1 93 GLY n 1 94 MET n 1 95 LYS n 1 96 ARG n 1 97 LEU n 1 98 LYS n 1 99 VAL n 1 100 GLN n 1 101 LEU n 1 102 LYS n 1 103 ARG n 1 104 SER n 1 105 LYS n 1 106 ASN n 1 107 ASP n 1 108 SER n 1 109 LYS n 1 110 SER n 1 111 GLY n 1 112 PRO n 1 113 SER n 1 114 SER n 1 115 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene CUGBP1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P040329-21 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CUGB1_HUMAN _struct_ref.pdbx_db_accession Q92879 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM NGFQIGMKRLKVQLKRSKNDSK ; _struct_ref.pdbx_align_begin 383 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2CPZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 109 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q92879 _struct_ref_seq.db_align_beg 383 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 484 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 383 _struct_ref_seq.pdbx_auth_seq_align_end 484 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2CPZ GLY A 1 ? UNP Q92879 ? ? 'cloning artifact' 376 1 1 2CPZ SER A 2 ? UNP Q92879 ? ? 'cloning artifact' 377 2 1 2CPZ SER A 3 ? UNP Q92879 ? ? 'cloning artifact' 378 3 1 2CPZ GLY A 4 ? UNP Q92879 ? ? 'cloning artifact' 379 4 1 2CPZ SER A 5 ? UNP Q92879 ? ? 'cloning artifact' 380 5 1 2CPZ SER A 6 ? UNP Q92879 ? ? 'cloning artifact' 381 6 1 2CPZ GLY A 7 ? UNP Q92879 ? ? 'cloning artifact' 382 7 1 2CPZ SER A 110 ? UNP Q92879 ? ? 'cloning artifact' 485 8 1 2CPZ GLY A 111 ? UNP Q92879 ? ? 'cloning artifact' 486 9 1 2CPZ PRO A 112 ? UNP Q92879 ? ? 'cloning artifact' 487 10 1 2CPZ SER A 113 ? UNP Q92879 ? ? 'cloning artifact' 488 11 1 2CPZ SER A 114 ? UNP Q92879 ? ? 'cloning artifact' 489 12 1 2CPZ GLY A 115 ? UNP Q92879 ? ? 'cloning artifact' 490 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.37mM 13C/15N-PROTEIN, 20mM d-Tris-HCl (pH 7.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2CPZ _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2CPZ _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2CPZ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A' 3 'data analysis' KUJIRA 0.9297 'Kobayashi, N' 4 'structure solution' CYANA 2.0.17 'Guntert, P' 5 refinement CYANA 2.0.17 'Guntert, P' 6 # _exptl.entry_id 2CPZ _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2CPZ _struct.title 'solution structure of RNA binding domain 3 in CUG triplet repeat RNA-binding protein 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CPZ _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;RRM domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSCRIPTION ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 38 ? MET A 47 ? GLY A 413 MET A 422 1 ? 10 HELX_P HELX_P2 2 PRO A 48 ? GLY A 50 ? PRO A 423 GLY A 425 5 ? 3 HELX_P HELX_P3 3 ASN A 76 ? ASN A 88 ? ASN A 451 ASN A 463 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 54 ? ILE A 59 ? SER A 429 ILE A 434 A 2 SER A 66 ? SER A 73 ? SER A 441 SER A 448 A 3 LEU A 28 ? TYR A 31 ? LEU A 403 TYR A 406 A 4 LYS A 98 ? GLN A 100 ? LYS A 473 GLN A 475 B 1 GLN A 91 ? ILE A 92 ? GLN A 466 ILE A 467 B 2 LYS A 95 ? ARG A 96 ? LYS A 470 ARG A 471 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 58 ? N PHE A 433 O LYS A 67 ? O LYS A 442 A 2 3 O VAL A 72 ? O VAL A 447 N LEU A 28 ? N LEU A 403 A 3 4 N TYR A 31 ? N TYR A 406 O LYS A 98 ? O LYS A 473 B 1 2 N ILE A 92 ? N ILE A 467 O LYS A 95 ? O LYS A 470 # _database_PDB_matrix.entry_id 2CPZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2CPZ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 376 376 GLY GLY A . n A 1 2 SER 2 377 377 SER SER A . n A 1 3 SER 3 378 378 SER SER A . n A 1 4 GLY 4 379 379 GLY GLY A . n A 1 5 SER 5 380 380 SER SER A . n A 1 6 SER 6 381 381 SER SER A . n A 1 7 GLY 7 382 382 GLY GLY A . n A 1 8 LEU 8 383 383 LEU LEU A . n A 1 9 THR 9 384 384 THR THR A . n A 1 10 GLN 10 385 385 GLN GLN A . n A 1 11 GLN 11 386 386 GLN GLN A . n A 1 12 SER 12 387 387 SER SER A . n A 1 13 ILE 13 388 388 ILE ILE A . n A 1 14 GLY 14 389 389 GLY GLY A . n A 1 15 ALA 15 390 390 ALA ALA A . n A 1 16 ALA 16 391 391 ALA ALA A . n A 1 17 GLY 17 392 392 GLY GLY A . n A 1 18 SER 18 393 393 SER SER A . n A 1 19 GLN 19 394 394 GLN GLN A . n A 1 20 LYS 20 395 395 LYS LYS A . n A 1 21 GLU 21 396 396 GLU GLU A . n A 1 22 GLY 22 397 397 GLY GLY A . n A 1 23 PRO 23 398 398 PRO PRO A . n A 1 24 GLU 24 399 399 GLU GLU A . n A 1 25 GLY 25 400 400 GLY GLY A . n A 1 26 ALA 26 401 401 ALA ALA A . n A 1 27 ASN 27 402 402 ASN ASN A . n A 1 28 LEU 28 403 403 LEU LEU A . n A 1 29 PHE 29 404 404 PHE PHE A . n A 1 30 ILE 30 405 405 ILE ILE A . n A 1 31 TYR 31 406 406 TYR TYR A . n A 1 32 HIS 32 407 407 HIS HIS A . n A 1 33 LEU 33 408 408 LEU LEU A . n A 1 34 PRO 34 409 409 PRO PRO A . n A 1 35 GLN 35 410 410 GLN GLN A . n A 1 36 GLU 36 411 411 GLU GLU A . n A 1 37 PHE 37 412 412 PHE PHE A . n A 1 38 GLY 38 413 413 GLY GLY A . n A 1 39 ASP 39 414 414 ASP ASP A . n A 1 40 GLN 40 415 415 GLN GLN A . n A 1 41 ASP 41 416 416 ASP ASP A . n A 1 42 LEU 42 417 417 LEU LEU A . n A 1 43 LEU 43 418 418 LEU LEU A . n A 1 44 GLN 44 419 419 GLN GLN A . n A 1 45 MET 45 420 420 MET MET A . n A 1 46 PHE 46 421 421 PHE PHE A . n A 1 47 MET 47 422 422 MET MET A . n A 1 48 PRO 48 423 423 PRO PRO A . n A 1 49 PHE 49 424 424 PHE PHE A . n A 1 50 GLY 50 425 425 GLY GLY A . n A 1 51 ASN 51 426 426 ASN ASN A . n A 1 52 VAL 52 427 427 VAL VAL A . n A 1 53 VAL 53 428 428 VAL VAL A . n A 1 54 SER 54 429 429 SER SER A . n A 1 55 ALA 55 430 430 ALA ALA A . n A 1 56 LYS 56 431 431 LYS LYS A . n A 1 57 VAL 57 432 432 VAL VAL A . n A 1 58 PHE 58 433 433 PHE PHE A . n A 1 59 ILE 59 434 434 ILE ILE A . n A 1 60 ASP 60 435 435 ASP ASP A . n A 1 61 LYS 61 436 436 LYS LYS A . n A 1 62 GLN 62 437 437 GLN GLN A . n A 1 63 THR 63 438 438 THR THR A . n A 1 64 ASN 64 439 439 ASN ASN A . n A 1 65 LEU 65 440 440 LEU LEU A . n A 1 66 SER 66 441 441 SER SER A . n A 1 67 LYS 67 442 442 LYS LYS A . n A 1 68 CYS 68 443 443 CYS CYS A . n A 1 69 PHE 69 444 444 PHE PHE A . n A 1 70 GLY 70 445 445 GLY GLY A . n A 1 71 PHE 71 446 446 PHE PHE A . n A 1 72 VAL 72 447 447 VAL VAL A . n A 1 73 SER 73 448 448 SER SER A . n A 1 74 TYR 74 449 449 TYR TYR A . n A 1 75 ASP 75 450 450 ASP ASP A . n A 1 76 ASN 76 451 451 ASN ASN A . n A 1 77 PRO 77 452 452 PRO PRO A . n A 1 78 VAL 78 453 453 VAL VAL A . n A 1 79 SER 79 454 454 SER SER A . n A 1 80 ALA 80 455 455 ALA ALA A . n A 1 81 GLN 81 456 456 GLN GLN A . n A 1 82 ALA 82 457 457 ALA ALA A . n A 1 83 ALA 83 458 458 ALA ALA A . n A 1 84 ILE 84 459 459 ILE ILE A . n A 1 85 GLN 85 460 460 GLN GLN A . n A 1 86 SER 86 461 461 SER SER A . n A 1 87 MET 87 462 462 MET MET A . n A 1 88 ASN 88 463 463 ASN ASN A . n A 1 89 GLY 89 464 464 GLY GLY A . n A 1 90 PHE 90 465 465 PHE PHE A . n A 1 91 GLN 91 466 466 GLN GLN A . n A 1 92 ILE 92 467 467 ILE ILE A . n A 1 93 GLY 93 468 468 GLY GLY A . n A 1 94 MET 94 469 469 MET MET A . n A 1 95 LYS 95 470 470 LYS LYS A . n A 1 96 ARG 96 471 471 ARG ARG A . n A 1 97 LEU 97 472 472 LEU LEU A . n A 1 98 LYS 98 473 473 LYS LYS A . n A 1 99 VAL 99 474 474 VAL VAL A . n A 1 100 GLN 100 475 475 GLN GLN A . n A 1 101 LEU 101 476 476 LEU LEU A . n A 1 102 LYS 102 477 477 LYS LYS A . n A 1 103 ARG 103 478 478 ARG ARG A . n A 1 104 SER 104 479 479 SER SER A . n A 1 105 LYS 105 480 480 LYS LYS A . n A 1 106 ASN 106 481 481 ASN ASN A . n A 1 107 ASP 107 482 482 ASP ASP A . n A 1 108 SER 108 483 483 SER SER A . n A 1 109 LYS 109 484 484 LYS LYS A . n A 1 110 SER 110 485 485 SER SER A . n A 1 111 GLY 111 486 486 GLY GLY A . n A 1 112 PRO 112 487 487 PRO PRO A . n A 1 113 SER 113 488 488 SER SER A . n A 1 114 SER 114 489 489 SER SER A . n A 1 115 GLY 115 490 490 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-19 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 381 ? ? -101.64 41.95 2 1 LEU A 383 ? ? -47.12 109.48 3 1 GLN A 385 ? ? -93.91 41.29 4 1 GLN A 394 ? ? -88.57 36.47 5 1 ALA A 430 ? ? -160.72 107.53 6 1 SER A 441 ? ? -35.90 136.75 7 1 ASN A 463 ? ? -45.27 104.34 8 1 LYS A 477 ? ? -34.37 112.79 9 1 ARG A 478 ? ? -48.69 158.53 10 1 SER A 485 ? ? -64.42 83.42 11 1 SER A 489 ? ? 39.08 41.66 12 2 ALA A 391 ? ? -54.57 98.33 13 2 GLN A 394 ? ? -96.04 33.79 14 2 GLU A 399 ? ? -54.16 97.60 15 2 LEU A 403 ? ? -160.12 110.38 16 2 SER A 441 ? ? -38.37 105.87 17 2 LYS A 442 ? ? -52.02 -174.49 18 2 ALA A 458 ? ? -64.02 -70.52 19 2 ASN A 463 ? ? -35.98 99.69 20 2 PRO A 487 ? ? -79.96 29.54 21 3 ALA A 390 ? ? -102.11 78.25 22 3 GLN A 394 ? ? -86.20 30.82 23 3 PRO A 409 ? ? -50.46 -171.25 24 3 ASN A 439 ? ? 72.66 33.79 25 3 LYS A 442 ? ? -53.72 -175.49 26 3 ASN A 463 ? ? -55.97 107.56 27 3 LYS A 477 ? ? -39.54 104.01 28 3 LYS A 480 ? ? -84.59 44.77 29 3 ASP A 482 ? ? -170.48 129.06 30 3 SER A 485 ? ? -85.70 48.55 31 3 PRO A 487 ? ? -46.09 104.32 32 4 ALA A 390 ? ? -104.94 78.84 33 4 ALA A 430 ? ? -160.91 119.49 34 4 ASN A 463 ? ? -42.55 100.26 35 4 LYS A 480 ? ? -105.10 42.17 36 4 SER A 489 ? ? 35.31 50.00 37 5 GLU A 399 ? ? -53.41 102.51 38 5 HIS A 407 ? ? 73.47 54.44 39 5 PRO A 409 ? ? -47.73 -179.04 40 5 ALA A 430 ? ? -161.30 110.29 41 5 ASN A 439 ? ? 71.66 31.96 42 5 LYS A 442 ? ? -55.36 -174.96 43 5 LYS A 477 ? ? -32.38 -70.82 44 5 ASP A 482 ? ? -170.88 130.56 45 5 SER A 483 ? ? -54.70 170.34 46 5 LYS A 484 ? ? -124.64 -54.50 47 6 SER A 381 ? ? -46.20 165.89 48 6 GLN A 385 ? ? -85.67 41.06 49 6 SER A 387 ? ? -82.25 43.50 50 6 ILE A 388 ? ? -39.27 133.65 51 6 ALA A 391 ? ? -38.77 127.52 52 6 GLU A 399 ? ? -58.52 100.51 53 6 PRO A 409 ? ? -47.39 -179.50 54 6 ALA A 430 ? ? -161.03 113.71 55 6 SER A 441 ? ? -34.35 107.29 56 6 LYS A 442 ? ? -51.54 -174.95 57 6 LYS A 480 ? ? -103.22 40.77 58 6 SER A 485 ? ? -60.00 107.03 59 6 SER A 489 ? ? -38.37 154.26 60 7 SER A 393 ? ? -36.32 152.34 61 7 GLU A 399 ? ? -49.58 97.20 62 7 PRO A 409 ? ? -48.87 -175.89 63 7 ALA A 430 ? ? -161.05 117.72 64 7 SER A 441 ? ? -34.88 103.99 65 7 LYS A 442 ? ? -51.92 -174.90 66 7 ASN A 463 ? ? -35.60 110.92 67 7 LYS A 477 ? ? -33.79 -72.39 68 7 PRO A 487 ? ? -79.73 23.97 69 8 SER A 378 ? ? -94.05 42.66 70 8 GLN A 385 ? ? -41.94 101.45 71 8 ASP A 416 ? ? -36.42 -39.40 72 8 ASN A 439 ? ? 37.71 38.54 73 8 LYS A 442 ? ? -59.30 -174.74 74 8 LYS A 477 ? ? -34.97 105.18 75 8 PRO A 487 ? ? -45.57 162.22 76 9 THR A 384 ? ? -170.77 132.45 77 9 SER A 387 ? ? -83.06 40.58 78 9 SER A 393 ? ? -35.87 126.42 79 9 GLN A 394 ? ? -107.36 50.78 80 9 GLU A 399 ? ? -55.70 100.71 81 9 PRO A 409 ? ? -48.11 -178.35 82 9 ALA A 430 ? ? -161.08 114.77 83 9 SER A 441 ? ? -35.39 102.64 84 9 LYS A 442 ? ? -47.38 174.69 85 9 ASN A 463 ? ? -53.01 103.14 86 9 LYS A 477 ? ? -34.01 107.48 87 9 PRO A 487 ? ? -43.31 167.62 88 10 SER A 378 ? ? -47.46 168.55 89 10 ALA A 391 ? ? -39.92 119.93 90 10 PRO A 398 ? ? -48.06 176.11 91 10 PRO A 409 ? ? -73.35 -169.77 92 10 ASN A 439 ? ? 71.85 31.02 93 10 SER A 441 ? ? -36.81 139.58 94 10 ASN A 463 ? ? -38.17 105.50 95 10 LYS A 477 ? ? -35.92 102.16 96 11 SER A 381 ? ? -104.17 41.08 97 11 LEU A 383 ? ? 36.04 39.37 98 11 ALA A 391 ? ? -56.58 103.44 99 11 GLU A 399 ? ? -51.46 104.01 100 11 PRO A 409 ? ? -49.83 -173.65 101 11 LYS A 436 ? ? -86.73 33.26 102 11 LYS A 442 ? ? -53.04 -174.85 103 11 ASN A 463 ? ? -43.89 108.19 104 11 LYS A 477 ? ? -35.25 110.60 105 11 SER A 483 ? ? -53.60 108.09 106 11 LYS A 484 ? ? -64.92 89.79 107 12 LEU A 383 ? ? -85.53 31.50 108 12 GLN A 394 ? ? -93.32 53.76 109 12 PRO A 409 ? ? -48.77 -179.55 110 12 ALA A 430 ? ? -160.82 111.68 111 12 ASN A 439 ? ? 72.98 39.18 112 12 SER A 441 ? ? -34.53 106.79 113 12 LYS A 442 ? ? -51.61 -174.98 114 12 ASN A 463 ? ? -59.80 89.86 115 12 LYS A 477 ? ? -34.09 116.78 116 13 GLN A 385 ? ? 35.32 42.52 117 13 SER A 393 ? ? -39.29 114.75 118 13 PRO A 398 ? ? -49.45 157.84 119 13 GLU A 399 ? ? -66.37 82.15 120 13 PRO A 409 ? ? -49.81 -173.53 121 13 SER A 441 ? ? -34.49 110.91 122 13 LYS A 442 ? ? -54.36 -174.81 123 13 ASN A 463 ? ? -44.78 106.17 124 13 LYS A 477 ? ? -34.67 109.28 125 13 ARG A 478 ? ? -41.36 150.19 126 13 ASN A 481 ? ? -37.12 115.63 127 13 SER A 483 ? ? -174.81 109.52 128 14 SER A 387 ? ? -106.22 44.27 129 14 ALA A 390 ? ? -101.10 70.88 130 14 GLU A 399 ? ? -52.37 107.83 131 14 LEU A 403 ? ? -160.35 108.03 132 14 HIS A 407 ? ? 71.66 54.66 133 14 PRO A 409 ? ? -47.84 178.23 134 14 LYS A 442 ? ? -51.80 -175.23 135 14 ASN A 463 ? ? -44.95 108.00 136 14 LYS A 477 ? ? -33.72 111.50 137 14 ASP A 482 ? ? -59.05 -178.83 138 14 SER A 483 ? ? -175.02 127.73 139 15 ALA A 391 ? ? -35.90 120.61 140 15 GLN A 394 ? ? -101.59 72.13 141 15 GLU A 399 ? ? -50.89 97.93 142 15 PRO A 409 ? ? -48.16 167.90 143 15 ALA A 430 ? ? -161.07 107.11 144 15 SER A 441 ? ? -34.87 106.03 145 15 LYS A 442 ? ? -51.69 -174.90 146 15 LYS A 477 ? ? -34.47 115.53 147 16 LEU A 383 ? ? -109.60 -63.09 148 16 SER A 393 ? ? -34.72 145.18 149 16 GLU A 399 ? ? -65.85 78.43 150 16 LEU A 403 ? ? -160.06 119.84 151 16 ALA A 430 ? ? -160.59 107.74 152 16 SER A 441 ? ? -37.85 110.06 153 16 LYS A 442 ? ? -52.21 -174.95 154 16 ASN A 463 ? ? -42.45 107.27 155 16 LYS A 477 ? ? -34.04 99.54 156 16 SER A 479 ? ? -105.92 -61.89 157 16 PRO A 487 ? ? -45.58 109.63 158 17 ALA A 391 ? ? -45.43 101.18 159 17 PRO A 409 ? ? -48.35 179.73 160 17 SER A 441 ? ? -36.91 140.53 161 17 ASN A 463 ? ? -41.56 104.19 162 17 LYS A 477 ? ? -34.14 133.76 163 17 LYS A 480 ? ? -115.91 79.68 164 17 ASP A 482 ? ? -166.36 115.64 165 17 LYS A 484 ? ? -128.55 -70.03 166 18 SER A 393 ? ? -37.32 124.62 167 18 HIS A 407 ? ? 72.90 47.80 168 18 PRO A 409 ? ? -47.91 177.87 169 18 ASN A 426 ? ? -66.31 94.02 170 18 ALA A 430 ? ? -161.21 114.01 171 18 SER A 441 ? ? -39.92 107.28 172 18 LYS A 442 ? ? -52.78 -176.21 173 18 ASN A 463 ? ? -49.12 106.00 174 18 LYS A 477 ? ? -34.34 121.33 175 18 LYS A 484 ? ? -44.00 163.64 176 19 GLU A 399 ? ? -56.44 108.89 177 19 PRO A 409 ? ? -70.54 -168.31 178 19 ALA A 430 ? ? -160.44 111.09 179 19 ASN A 439 ? ? 74.97 36.10 180 19 SER A 441 ? ? -34.35 137.29 181 19 ASN A 463 ? ? -40.35 100.80 182 19 ASP A 482 ? ? -129.72 -56.53 183 19 SER A 483 ? ? -166.00 112.55 184 20 GLN A 394 ? ? -87.15 42.64 185 20 PRO A 409 ? ? -50.02 -172.31 186 20 ASP A 414 ? ? -90.56 -62.84 187 20 ASP A 416 ? ? -36.00 -71.87 188 20 ALA A 430 ? ? -160.22 114.55 189 20 LYS A 442 ? ? -52.46 -174.79 190 20 ALA A 457 ? ? -35.89 -30.09 191 20 ASN A 463 ? ? -38.16 97.56 192 20 LYS A 477 ? ? -34.18 109.07 193 20 LYS A 480 ? ? -99.26 40.78 194 20 ASN A 481 ? ? -84.57 42.19 #