HEADER RNA BINDING PROTEIN 20-MAY-05 2CQK TITLE SOLUTION STRUCTURE OF THE LA DOMAIN OF C-MPL BINDING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-MPL BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LA DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RIKEN CDNA IOH13489; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041004-02; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS LA DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CQK 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CQK 1 VERSN REVDAT 1 20-NOV-05 2CQK 0 JRNL AUTH S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE LA DOMAIN OF C-MPL BINDING PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CQK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024511. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.4MM 13C/15N-PROTEIN; 20MM D REMARK 210 -TRIS-HCL; 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, OLIVIA 1.10.5, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 40 -59.23 -132.54 REMARK 500 1 ALA A 43 174.63 -49.72 REMARK 500 1 MET A 76 172.28 -47.88 REMARK 500 1 ASP A 79 33.26 -92.60 REMARK 500 1 MET A 112 -33.10 -36.25 REMARK 500 1 GLU A 120 -32.29 -130.22 REMARK 500 1 SER A 125 96.70 -45.00 REMARK 500 1 HIS A 126 38.54 -85.37 REMARK 500 1 SER A 135 111.95 -163.32 REMARK 500 2 ALA A 43 136.59 -35.60 REMARK 500 2 MET A 76 171.30 -47.50 REMARK 500 2 ASP A 79 30.06 -94.72 REMARK 500 2 MET A 112 -27.62 -39.43 REMARK 500 2 ASP A 116 158.70 -48.73 REMARK 500 3 ASP A 69 79.42 -102.18 REMARK 500 3 GLN A 80 27.99 45.04 REMARK 500 3 MET A 112 -26.16 -39.92 REMARK 500 3 HIS A 126 34.77 -88.97 REMARK 500 3 ARG A 128 38.56 -84.89 REMARK 500 4 MET A 76 174.11 -47.74 REMARK 500 4 ASP A 79 33.79 -91.73 REMARK 500 4 MET A 112 -25.69 -39.91 REMARK 500 4 ASP A 116 134.21 -39.88 REMARK 500 4 SER A 125 95.05 -63.96 REMARK 500 5 SER A 41 163.61 -42.20 REMARK 500 5 MET A 76 177.60 -48.37 REMARK 500 5 ASP A 79 31.37 -88.98 REMARK 500 5 ASP A 116 140.18 -38.42 REMARK 500 5 PRO A 133 -176.64 -69.75 REMARK 500 6 SER A 41 95.56 -52.69 REMARK 500 6 MET A 112 -32.21 -34.90 REMARK 500 6 ASP A 116 128.20 -39.95 REMARK 500 7 HIS A 126 35.30 -91.90 REMARK 500 8 ALA A 43 132.55 -39.70 REMARK 500 8 MET A 76 -175.93 -51.20 REMARK 500 8 MET A 90 136.56 -34.95 REMARK 500 8 MET A 112 -32.19 -35.64 REMARK 500 8 SER A 125 102.66 -52.51 REMARK 500 8 HIS A 126 -39.78 -34.44 REMARK 500 8 SER A 134 -51.28 -125.81 REMARK 500 9 MET A 76 164.43 -43.56 REMARK 500 9 MET A 112 -36.43 -34.23 REMARK 500 9 SER A 125 92.91 -45.69 REMARK 500 9 ARG A 128 79.87 -106.45 REMARK 500 10 ASP A 69 75.53 -101.51 REMARK 500 10 MET A 76 170.06 -45.59 REMARK 500 10 SER A 125 99.60 -69.84 REMARK 500 11 SER A 37 169.65 -49.10 REMARK 500 11 SER A 40 40.97 -95.95 REMARK 500 11 MET A 76 172.34 -50.93 REMARK 500 REMARK 500 THIS ENTRY HAS 86 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002013489.1 RELATED DB: TARGETDB DBREF 2CQK A 43 130 UNP Q71RC2 LARP4_HUMAN 43 130 SEQADV 2CQK GLY A 36 UNP Q71RC2 CLONING ARTIFACT SEQADV 2CQK SER A 37 UNP Q71RC2 CLONING ARTIFACT SEQADV 2CQK SER A 38 UNP Q71RC2 CLONING ARTIFACT SEQADV 2CQK GLY A 39 UNP Q71RC2 CLONING ARTIFACT SEQADV 2CQK SER A 40 UNP Q71RC2 CLONING ARTIFACT SEQADV 2CQK SER A 41 UNP Q71RC2 CLONING ARTIFACT SEQADV 2CQK GLY A 42 UNP Q71RC2 CLONING ARTIFACT SEQADV 2CQK SER A 131 UNP Q71RC2 CLONING ARTIFACT SEQADV 2CQK GLY A 132 UNP Q71RC2 CLONING ARTIFACT SEQADV 2CQK PRO A 133 UNP Q71RC2 CLONING ARTIFACT SEQADV 2CQK SER A 134 UNP Q71RC2 CLONING ARTIFACT SEQADV 2CQK SER A 135 UNP Q71RC2 CLONING ARTIFACT SEQADV 2CQK GLY A 136 UNP Q71RC2 CLONING ARTIFACT SEQRES 1 A 101 GLY SER SER GLY SER SER GLY ALA VAL SER THR GLU ASP SEQRES 2 A 101 LEU LYS GLU CYS LEU LYS LYS GLN LEU GLU PHE CYS PHE SEQRES 3 A 101 SER ARG GLU ASN LEU SER LYS ASP LEU TYR LEU ILE SER SEQRES 4 A 101 GLN MET ASP SER ASP GLN PHE ILE PRO ILE TRP THR VAL SEQRES 5 A 101 ALA ASN MET GLU GLU ILE LYS LYS LEU THR THR ASP PRO SEQRES 6 A 101 ASP LEU ILE LEU GLU VAL LEU ARG SER SER PRO MET VAL SEQRES 7 A 101 GLN VAL ASP GLU LYS GLY GLU LYS VAL ARG PRO SER HIS SEQRES 8 A 101 LYS ARG CYS ILE SER GLY PRO SER SER GLY HELIX 1 1 THR A 46 PHE A 61 1 16 HELIX 2 2 ARG A 63 LYS A 68 1 6 HELIX 3 3 LEU A 70 GLN A 75 1 6 HELIX 4 4 ILE A 84 ASN A 89 1 6 HELIX 5 5 GLU A 91 LEU A 96 1 6 HELIX 6 6 PRO A 100 SER A 109 1 10 SHEET 1 A 3 PHE A 81 PRO A 83 0 SHEET 2 A 3 LYS A 121 ARG A 123 -1 O VAL A 122 N ILE A 82 SHEET 3 A 3 VAL A 113 VAL A 115 -1 N GLN A 114 O ARG A 123 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1