HEADER TRANSLATION 20-MAY-05 2CQM TITLE SOLUTION STRUCTURE OF THE MITOCHONDRIAL RIBOSOMAL PROTEIN L17 ISOLOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL PROTEIN L17 ISOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MITOCHONDRIAL RIBOSOMAL PROTEIN L17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MRPL17; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040315-54; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ALPHA AND BETA (A+B), STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSLATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CQM 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CQM 1 VERSN REVDAT 1 20-NOV-05 2CQM 0 JRNL AUTH S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE MITOCHONDRIAL RIBOSOMAL PROTEIN JRNL TITL 2 L17 ISOLOG JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CQM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024513. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1MM 13C/15N-PROTEIN; 20MM D REMARK 210 -TRIS-HCL; 200MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, OLIVIA 1.10.5, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 40 25.01 40.31 REMARK 500 1 ARG A 41 131.43 -175.97 REMARK 500 1 ASP A 67 41.45 -80.87 REMARK 500 1 GLU A 82 102.57 -41.70 REMARK 500 1 VAL A 92 -72.93 -131.32 REMARK 500 1 GLN A 100 158.09 -39.79 REMARK 500 1 LYS A 126 78.50 -64.93 REMARK 500 1 PRO A 132 -179.52 -69.78 REMARK 500 2 SER A 26 84.15 -61.96 REMARK 500 2 GLU A 40 25.13 39.80 REMARK 500 2 ARG A 41 130.61 -176.97 REMARK 500 2 ASP A 67 41.98 -81.02 REMARK 500 2 GLU A 82 107.95 -52.64 REMARK 500 2 VAL A 92 -73.95 -127.37 REMARK 500 2 LEU A 115 156.35 -49.75 REMARK 500 2 ASP A 116 149.90 -34.42 REMARK 500 2 SER A 140 97.58 -64.45 REMARK 500 3 GLU A 40 25.52 38.60 REMARK 500 3 ARG A 41 131.43 -177.91 REMARK 500 3 ASP A 67 38.83 -82.40 REMARK 500 3 VAL A 92 -71.56 -128.13 REMARK 500 3 PRO A 111 -178.96 -69.74 REMARK 500 3 LYS A 119 103.99 -48.22 REMARK 500 3 LYS A 126 77.76 -63.99 REMARK 500 4 GLU A 40 25.05 39.45 REMARK 500 4 ARG A 41 131.56 -179.44 REMARK 500 4 VAL A 92 -68.59 -130.34 REMARK 500 4 SER A 114 161.58 -46.98 REMARK 500 4 ALA A 118 115.14 -161.14 REMARK 500 4 LYS A 119 82.36 -66.92 REMARK 500 4 LYS A 126 75.62 -60.42 REMARK 500 4 SER A 137 142.08 -171.56 REMARK 500 5 SER A 22 42.10 -98.92 REMARK 500 5 GLU A 40 24.93 39.85 REMARK 500 5 ARG A 41 131.43 -177.66 REMARK 500 5 ASP A 67 42.52 -80.42 REMARK 500 5 VAL A 92 -74.75 -132.63 REMARK 500 5 TYR A 97 37.09 -97.36 REMARK 500 5 PRO A 111 -176.46 -69.78 REMARK 500 5 LEU A 135 160.68 -41.92 REMARK 500 5 PRO A 136 2.12 -69.83 REMARK 500 5 PRO A 139 -179.66 -69.78 REMARK 500 6 SER A 25 41.08 -97.83 REMARK 500 6 GLU A 40 25.04 39.53 REMARK 500 6 ARG A 41 130.76 -178.00 REMARK 500 6 ASP A 67 39.70 -81.44 REMARK 500 6 VAL A 92 -74.61 -131.33 REMARK 500 6 GLN A 100 132.61 -34.20 REMARK 500 6 LYS A 119 83.98 -68.13 REMARK 500 7 SER A 25 -60.95 -95.76 REMARK 500 REMARK 500 THIS ENTRY HAS 201 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001000109.1 RELATED DB: TARGETDB DBREF 2CQM A 28 136 UNP Q9NRX2 Q9NRX2_HUMAN 28 136 SEQADV 2CQM GLY A 21 UNP Q9NRX2 CLONING ARTIFACT SEQADV 2CQM SER A 22 UNP Q9NRX2 CLONING ARTIFACT SEQADV 2CQM SER A 23 UNP Q9NRX2 CLONING ARTIFACT SEQADV 2CQM GLY A 24 UNP Q9NRX2 CLONING ARTIFACT SEQADV 2CQM SER A 25 UNP Q9NRX2 CLONING ARTIFACT SEQADV 2CQM SER A 26 UNP Q9NRX2 CLONING ARTIFACT SEQADV 2CQM GLY A 27 UNP Q9NRX2 CLONING ARTIFACT SEQADV 2CQM SER A 137 UNP Q9NRX2 CLONING ARTIFACT SEQADV 2CQM GLY A 138 UNP Q9NRX2 CLONING ARTIFACT SEQADV 2CQM PRO A 139 UNP Q9NRX2 CLONING ARTIFACT SEQADV 2CQM SER A 140 UNP Q9NRX2 CLONING ARTIFACT SEQADV 2CQM SER A 141 UNP Q9NRX2 CLONING ARTIFACT SEQADV 2CQM GLY A 142 UNP Q9NRX2 CLONING ARTIFACT SEQRES 1 A 122 GLY SER SER GLY SER SER GLY LEU LEU ARG ASN LEU LEU SEQRES 2 A 122 THR GLY LEU VAL ARG HIS GLU ARG ILE GLU ALA PRO TRP SEQRES 3 A 122 ALA ARG VAL ASP GLU MET ARG GLY TYR ALA GLU LYS LEU SEQRES 4 A 122 ILE ASP TYR GLY LYS LEU GLY ASP THR ASN GLU ARG ALA SEQRES 5 A 122 MET ARG MET ALA ASP PHE TRP LEU THR GLU LYS ASP LEU SEQRES 6 A 122 ILE PRO LYS LEU PHE GLN VAL LEU ALA PRO ARG TYR LYS SEQRES 7 A 122 ASP GLN THR GLY GLY TYR THR ARG MET LEU GLN ILE PRO SEQRES 8 A 122 ASN ARG SER LEU ASP ARG ALA LYS MET ALA VAL ILE GLU SEQRES 9 A 122 TYR LYS GLY ASN CYS LEU PRO PRO LEU PRO LEU PRO SER SEQRES 10 A 122 GLY PRO SER SER GLY HELIX 1 1 LEU A 28 ARG A 38 1 11 HELIX 2 2 TRP A 46 LEU A 65 1 20 HELIX 3 3 GLU A 70 TRP A 79 1 10 HELIX 4 4 LYS A 83 GLN A 91 1 9 HELIX 5 5 LEU A 93 ARG A 96 1 4 SHEET 1 A 3 ARG A 41 ALA A 44 0 SHEET 2 A 3 ALA A 121 TYR A 125 -1 O ALA A 121 N ALA A 44 SHEET 3 A 3 THR A 105 GLN A 109 -1 N LEU A 108 O VAL A 122 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1