data_2CQO # _entry.id 2CQO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2CQO pdb_00002cqo 10.2210/pdb2cqo/pdb RCSB RCSB024515 ? ? WWPDB D_1000024515 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsi002006093.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CQO _pdbx_database_status.recvd_initial_deposition_date 2005-05-20 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Suzuki, S.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the S1 RNA binding domain of human hypothetical protein FLJ11067' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Suzuki, S.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Terada, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # _cell.entry_id 2CQO _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CQO _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Nucleolar protein of 40 kDa' _entity.formula_weight 12855.713 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'S1 domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Hypothetical protein FLJ11067, pNO40, Putative S1 RNA binding domain protein, PS1D protein, Pnn-interacting nucleolar protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGMNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIG REMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIESGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGMNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIG REMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIESGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsi002006093.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 MET n 1 9 ASN n 1 10 SER n 1 11 GLY n 1 12 ARG n 1 13 PRO n 1 14 GLU n 1 15 THR n 1 16 MET n 1 17 GLU n 1 18 ASN n 1 19 LEU n 1 20 PRO n 1 21 ALA n 1 22 LEU n 1 23 TYR n 1 24 THR n 1 25 ILE n 1 26 PHE n 1 27 GLN n 1 28 GLY n 1 29 GLU n 1 30 VAL n 1 31 ALA n 1 32 MET n 1 33 VAL n 1 34 THR n 1 35 ASP n 1 36 TYR n 1 37 GLY n 1 38 ALA n 1 39 PHE n 1 40 ILE n 1 41 LYS n 1 42 ILE n 1 43 PRO n 1 44 GLY n 1 45 CYS n 1 46 ARG n 1 47 LYS n 1 48 GLN n 1 49 GLY n 1 50 LEU n 1 51 VAL n 1 52 HIS n 1 53 ARG n 1 54 THR n 1 55 HIS n 1 56 MET n 1 57 SER n 1 58 SER n 1 59 CYS n 1 60 ARG n 1 61 VAL n 1 62 ASP n 1 63 LYS n 1 64 PRO n 1 65 SER n 1 66 GLU n 1 67 ILE n 1 68 VAL n 1 69 ASP n 1 70 VAL n 1 71 GLY n 1 72 ASP n 1 73 LYS n 1 74 VAL n 1 75 TRP n 1 76 VAL n 1 77 LYS n 1 78 LEU n 1 79 ILE n 1 80 GLY n 1 81 ARG n 1 82 GLU n 1 83 MET n 1 84 LYS n 1 85 ASN n 1 86 ASP n 1 87 ARG n 1 88 ILE n 1 89 LYS n 1 90 VAL n 1 91 SER n 1 92 LEU n 1 93 SER n 1 94 MET n 1 95 LYS n 1 96 VAL n 1 97 VAL n 1 98 ASN n 1 99 GLN n 1 100 GLY n 1 101 THR n 1 102 GLY n 1 103 LYS n 1 104 ASP n 1 105 LEU n 1 106 ASP n 1 107 PRO n 1 108 ASN n 1 109 ASN n 1 110 VAL n 1 111 ILE n 1 112 ILE n 1 113 GLU n 1 114 SER n 1 115 GLY n 1 116 PRO n 1 117 SER n 1 118 SER n 1 119 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene PS1D _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050111-18 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NO40_HUMAN _struct_ref.pdbx_db_accession Q9NP64 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDR IKVSLSMKVVNQGTGKDLDPNNVIIE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2CQO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 113 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 73921227 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 106 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 106 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2CQO GLY A 1 ? UNP Q9NP64 ? ? 'cloning artifact' -6 1 1 2CQO SER A 2 ? UNP Q9NP64 ? ? 'cloning artifact' -5 2 1 2CQO SER A 3 ? UNP Q9NP64 ? ? 'cloning artifact' -4 3 1 2CQO GLY A 4 ? UNP Q9NP64 ? ? 'cloning artifact' -3 4 1 2CQO SER A 5 ? UNP Q9NP64 ? ? 'cloning artifact' -2 5 1 2CQO SER A 6 ? UNP Q9NP64 ? ? 'cloning artifact' -1 6 1 2CQO GLY A 7 ? UNP Q9NP64 ? ? 'cloning artifact' 0 7 1 2CQO SER A 114 ? UNP Q9NP64 ? ? 'cloning artifact' 107 8 1 2CQO GLY A 115 ? UNP Q9NP64 ? ? 'cloning artifact' 108 9 1 2CQO PRO A 116 ? UNP Q9NP64 ? ? 'cloning artifact' 109 10 1 2CQO SER A 117 ? UNP Q9NP64 ? ? 'cloning artifact' 110 11 1 2CQO SER A 118 ? UNP Q9NP64 ? ? 'cloning artifact' 111 12 1 2CQO GLY A 119 ? UNP Q9NP64 ? ? 'cloning artifact' 112 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.4mM 13C/15N-PROTEIN; 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2CQO _pdbx_nmr_refine.method 'torsion angle dyanamics, simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2CQO _pdbx_nmr_details.text 'The structure was determined using triple-resonance NMR spectroscopy.' # _pdbx_nmr_ensemble.entry_id 2CQO _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2CQO _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9295 'Kobayashi, N.' 4 'data analysis' Olivia 1.10.5 'Yokochi, M.' 5 'structure solution' CYANA 2.0.17 'Guntert, P.' 6 refinement CYANA 2.0.17 'Guntert, P.' 7 # _exptl.entry_id 2CQO _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2CQO _struct.title 'Solution structure of the S1 RNA binding domain of human hypothetical protein FLJ11067' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CQO _struct_keywords.pdbx_keywords RIBOSOME _struct_keywords.text ;S1 domain, OB-fold, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RIBOSOME ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 53 ? MET A 56 ? ARG A 46 MET A 49 1 ? 4 HELX_P HELX_P2 2 PRO A 64 ? GLU A 66 ? PRO A 57 GLU A 59 1 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 24 ? THR A 34 ? THR A 17 THR A 27 A 2 GLY A 37 ? LYS A 41 ? GLY A 30 LYS A 34 A 3 GLN A 48 ? HIS A 52 ? GLN A 41 HIS A 45 A 4 ARG A 87 ? SER A 93 ? ARG A 80 SER A 86 A 5 ASP A 72 ? LYS A 84 ? ASP A 65 LYS A 77 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 34 ? N THR A 27 O GLY A 37 ? O GLY A 30 A 2 3 N ALA A 38 ? N ALA A 31 O VAL A 51 ? O VAL A 44 A 3 4 N LEU A 50 ? N LEU A 43 O LEU A 92 ? O LEU A 85 A 4 5 O LYS A 89 ? O LYS A 82 N GLU A 82 ? N GLU A 75 # _database_PDB_matrix.entry_id 2CQO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2CQO _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -6 -6 GLY GLY A . n A 1 2 SER 2 -5 -5 SER SER A . n A 1 3 SER 3 -4 -4 SER SER A . n A 1 4 GLY 4 -3 -3 GLY GLY A . n A 1 5 SER 5 -2 -2 SER SER A . n A 1 6 SER 6 -1 -1 SER SER A . n A 1 7 GLY 7 0 0 GLY GLY A . n A 1 8 MET 8 1 1 MET MET A . n A 1 9 ASN 9 2 2 ASN ASN A . n A 1 10 SER 10 3 3 SER SER A . n A 1 11 GLY 11 4 4 GLY GLY A . n A 1 12 ARG 12 5 5 ARG ARG A . n A 1 13 PRO 13 6 6 PRO PRO A . n A 1 14 GLU 14 7 7 GLU GLU A . n A 1 15 THR 15 8 8 THR THR A . n A 1 16 MET 16 9 9 MET MET A . n A 1 17 GLU 17 10 10 GLU GLU A . n A 1 18 ASN 18 11 11 ASN ASN A . n A 1 19 LEU 19 12 12 LEU LEU A . n A 1 20 PRO 20 13 13 PRO PRO A . n A 1 21 ALA 21 14 14 ALA ALA A . n A 1 22 LEU 22 15 15 LEU LEU A . n A 1 23 TYR 23 16 16 TYR TYR A . n A 1 24 THR 24 17 17 THR THR A . n A 1 25 ILE 25 18 18 ILE ILE A . n A 1 26 PHE 26 19 19 PHE PHE A . n A 1 27 GLN 27 20 20 GLN GLN A . n A 1 28 GLY 28 21 21 GLY GLY A . n A 1 29 GLU 29 22 22 GLU GLU A . n A 1 30 VAL 30 23 23 VAL VAL A . n A 1 31 ALA 31 24 24 ALA ALA A . n A 1 32 MET 32 25 25 MET MET A . n A 1 33 VAL 33 26 26 VAL VAL A . n A 1 34 THR 34 27 27 THR THR A . n A 1 35 ASP 35 28 28 ASP ASP A . n A 1 36 TYR 36 29 29 TYR TYR A . n A 1 37 GLY 37 30 30 GLY GLY A . n A 1 38 ALA 38 31 31 ALA ALA A . n A 1 39 PHE 39 32 32 PHE PHE A . n A 1 40 ILE 40 33 33 ILE ILE A . n A 1 41 LYS 41 34 34 LYS LYS A . n A 1 42 ILE 42 35 35 ILE ILE A . n A 1 43 PRO 43 36 36 PRO PRO A . n A 1 44 GLY 44 37 37 GLY GLY A . n A 1 45 CYS 45 38 38 CYS CYS A . n A 1 46 ARG 46 39 39 ARG ARG A . n A 1 47 LYS 47 40 40 LYS LYS A . n A 1 48 GLN 48 41 41 GLN GLN A . n A 1 49 GLY 49 42 42 GLY GLY A . n A 1 50 LEU 50 43 43 LEU LEU A . n A 1 51 VAL 51 44 44 VAL VAL A . n A 1 52 HIS 52 45 45 HIS HIS A . n A 1 53 ARG 53 46 46 ARG ARG A . n A 1 54 THR 54 47 47 THR THR A . n A 1 55 HIS 55 48 48 HIS HIS A . n A 1 56 MET 56 49 49 MET MET A . n A 1 57 SER 57 50 50 SER SER A . n A 1 58 SER 58 51 51 SER SER A . n A 1 59 CYS 59 52 52 CYS CYS A . n A 1 60 ARG 60 53 53 ARG ARG A . n A 1 61 VAL 61 54 54 VAL VAL A . n A 1 62 ASP 62 55 55 ASP ASP A . n A 1 63 LYS 63 56 56 LYS LYS A . n A 1 64 PRO 64 57 57 PRO PRO A . n A 1 65 SER 65 58 58 SER SER A . n A 1 66 GLU 66 59 59 GLU GLU A . n A 1 67 ILE 67 60 60 ILE ILE A . n A 1 68 VAL 68 61 61 VAL VAL A . n A 1 69 ASP 69 62 62 ASP ASP A . n A 1 70 VAL 70 63 63 VAL VAL A . n A 1 71 GLY 71 64 64 GLY GLY A . n A 1 72 ASP 72 65 65 ASP ASP A . n A 1 73 LYS 73 66 66 LYS LYS A . n A 1 74 VAL 74 67 67 VAL VAL A . n A 1 75 TRP 75 68 68 TRP TRP A . n A 1 76 VAL 76 69 69 VAL VAL A . n A 1 77 LYS 77 70 70 LYS LYS A . n A 1 78 LEU 78 71 71 LEU LEU A . n A 1 79 ILE 79 72 72 ILE ILE A . n A 1 80 GLY 80 73 73 GLY GLY A . n A 1 81 ARG 81 74 74 ARG ARG A . n A 1 82 GLU 82 75 75 GLU GLU A . n A 1 83 MET 83 76 76 MET MET A . n A 1 84 LYS 84 77 77 LYS LYS A . n A 1 85 ASN 85 78 78 ASN ASN A . n A 1 86 ASP 86 79 79 ASP ASP A . n A 1 87 ARG 87 80 80 ARG ARG A . n A 1 88 ILE 88 81 81 ILE ILE A . n A 1 89 LYS 89 82 82 LYS LYS A . n A 1 90 VAL 90 83 83 VAL VAL A . n A 1 91 SER 91 84 84 SER SER A . n A 1 92 LEU 92 85 85 LEU LEU A . n A 1 93 SER 93 86 86 SER SER A . n A 1 94 MET 94 87 87 MET MET A . n A 1 95 LYS 95 88 88 LYS LYS A . n A 1 96 VAL 96 89 89 VAL VAL A . n A 1 97 VAL 97 90 90 VAL VAL A . n A 1 98 ASN 98 91 91 ASN ASN A . n A 1 99 GLN 99 92 92 GLN GLN A . n A 1 100 GLY 100 93 93 GLY GLY A . n A 1 101 THR 101 94 94 THR THR A . n A 1 102 GLY 102 95 95 GLY GLY A . n A 1 103 LYS 103 96 96 LYS LYS A . n A 1 104 ASP 104 97 97 ASP ASP A . n A 1 105 LEU 105 98 98 LEU LEU A . n A 1 106 ASP 106 99 99 ASP ASP A . n A 1 107 PRO 107 100 100 PRO PRO A . n A 1 108 ASN 108 101 101 ASN ASN A . n A 1 109 ASN 109 102 102 ASN ASN A . n A 1 110 VAL 110 103 103 VAL VAL A . n A 1 111 ILE 111 104 104 ILE ILE A . n A 1 112 ILE 112 105 105 ILE ILE A . n A 1 113 GLU 113 106 106 GLU GLU A . n A 1 114 SER 114 107 107 SER SER A . n A 1 115 GLY 115 108 108 GLY GLY A . n A 1 116 PRO 116 109 109 PRO PRO A . n A 1 117 SER 117 110 110 SER SER A . n A 1 118 SER 118 111 111 SER SER A . n A 1 119 GLY 119 112 112 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-20 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 6 ? ? -69.71 -174.00 2 1 GLU A 10 ? ? -93.71 58.44 3 1 LEU A 12 ? ? -47.85 155.25 4 1 HIS A 45 ? ? -49.53 153.18 5 1 CYS A 52 ? ? -59.76 -177.70 6 1 VAL A 63 ? ? -38.90 125.89 7 1 SER A 107 ? ? -54.16 92.20 8 2 SER A -5 ? ? -130.53 -40.58 9 2 ASN A 2 ? ? -38.71 126.22 10 2 MET A 9 ? ? -49.52 94.65 11 2 PRO A 13 ? ? -69.75 -171.81 12 2 CYS A 52 ? ? -68.97 -174.99 13 2 ARG A 53 ? ? -59.97 105.83 14 2 ASP A 55 ? ? -124.49 -57.75 15 2 GLN A 92 ? ? -95.25 43.74 16 3 MET A 9 ? ? -38.62 -30.52 17 3 PRO A 13 ? ? -69.85 -173.19 18 3 HIS A 45 ? ? -49.59 151.73 19 3 CYS A 52 ? ? -54.01 -174.86 20 3 GLN A 92 ? ? -90.22 48.11 21 4 PRO A 6 ? ? -69.88 -171.82 22 4 CYS A 52 ? ? -129.75 -66.74 23 4 GLN A 92 ? ? -90.90 45.50 24 4 ASP A 99 ? ? -112.38 75.96 25 4 PRO A 100 ? ? -69.78 2.66 26 5 THR A 8 ? ? -49.40 -19.61 27 5 HIS A 45 ? ? -47.75 152.35 28 5 CYS A 52 ? ? -131.48 -73.84 29 5 VAL A 54 ? ? -116.54 68.08 30 5 GLN A 92 ? ? -98.45 47.56 31 5 ASP A 99 ? ? -117.71 78.83 32 5 ASN A 102 ? ? 71.51 42.18 33 6 LEU A 12 ? ? -46.86 156.40 34 6 HIS A 45 ? ? -48.66 153.75 35 6 CYS A 52 ? ? -52.75 178.31 36 6 ARG A 53 ? ? -63.61 97.29 37 6 VAL A 63 ? ? -35.35 121.76 38 6 GLN A 92 ? ? -88.98 41.33 39 6 PRO A 100 ? ? -69.70 0.58 40 7 PRO A 6 ? ? -69.76 -172.96 41 7 LEU A 12 ? ? -41.20 156.26 42 7 CYS A 52 ? ? -128.19 -71.04 43 7 ASP A 99 ? ? -119.99 76.16 44 7 SER A 110 ? ? -38.02 112.67 45 8 GLU A 7 ? ? -41.33 92.03 46 8 PRO A 13 ? ? -69.79 -177.63 47 8 CYS A 52 ? ? -53.22 175.96 48 8 THR A 94 ? ? -134.87 -39.90 49 8 PRO A 109 ? ? -69.73 2.73 50 9 SER A -5 ? ? -57.36 92.28 51 9 GLU A 7 ? ? -110.23 76.31 52 9 CYS A 52 ? ? -51.17 177.26 53 9 GLN A 92 ? ? -93.21 38.11 54 9 PRO A 100 ? ? -69.76 1.07 55 10 ARG A 5 ? ? -33.91 97.03 56 10 GLU A 10 ? ? -34.68 142.33 57 10 ASN A 11 ? ? -83.37 49.56 58 10 GLN A 92 ? ? -98.57 50.32 59 10 PRO A 100 ? ? -69.77 2.42 60 10 PRO A 109 ? ? -69.81 85.92 61 11 SER A -4 ? ? 35.29 42.31 62 11 SER A 3 ? ? -48.34 159.57 63 11 MET A 9 ? ? -55.87 88.58 64 11 PRO A 13 ? ? -69.77 -170.82 65 11 CYS A 52 ? ? -59.16 -177.31 66 11 GLN A 92 ? ? -86.07 45.50 67 12 SER A -1 ? ? -38.84 135.62 68 12 LEU A 12 ? ? -45.04 156.86 69 12 PRO A 13 ? ? -69.74 -177.12 70 12 CYS A 52 ? ? -61.63 -177.01 71 12 ASP A 99 ? ? -113.96 76.46 72 12 PRO A 109 ? ? -69.77 92.86 73 13 PRO A 6 ? ? -69.76 -179.22 74 13 MET A 9 ? ? -104.27 41.10 75 13 CYS A 52 ? ? -47.16 171.53 76 13 ARG A 53 ? ? -60.70 99.69 77 13 VAL A 63 ? ? -38.83 122.37 78 14 MET A 9 ? ? -51.85 -179.97 79 14 GLU A 10 ? ? -50.00 171.64 80 14 LEU A 12 ? ? -43.73 152.63 81 14 PRO A 13 ? ? -69.75 -174.22 82 14 CYS A 52 ? ? -59.59 -176.33 83 14 GLN A 92 ? ? -89.26 38.03 84 14 PRO A 100 ? ? -69.84 1.16 85 14 SER A 111 ? ? -46.84 151.27 86 15 SER A -2 ? ? -58.20 174.61 87 15 PRO A 13 ? ? -69.72 -173.89 88 15 CYS A 52 ? ? -48.12 176.73 89 15 ARG A 53 ? ? -59.89 98.09 90 15 GLN A 92 ? ? -91.92 52.19 91 15 ASP A 99 ? ? -112.34 75.69 92 15 PRO A 109 ? ? -69.80 -176.89 93 15 SER A 110 ? ? -131.81 -48.42 94 16 CYS A 52 ? ? -55.91 -176.55 95 16 VAL A 63 ? ? -38.24 117.15 96 16 GLN A 92 ? ? -88.99 44.87 97 16 PRO A 100 ? ? -69.77 0.47 98 16 SER A 111 ? ? -53.36 178.50 99 17 ARG A 5 ? ? -173.14 135.79 100 17 ASN A 11 ? ? -38.49 -26.46 101 17 LEU A 12 ? ? -40.40 150.02 102 17 PRO A 13 ? ? -69.69 -169.94 103 17 CYS A 52 ? ? -124.64 -69.74 104 17 GLN A 92 ? ? -86.54 38.60 105 17 PRO A 100 ? ? -69.76 0.83 106 17 SER A 107 ? ? 34.76 48.12 107 17 SER A 111 ? ? -50.43 101.94 108 18 SER A -4 ? ? 37.33 41.23 109 18 MET A 1 ? ? 35.70 49.36 110 18 GLU A 7 ? ? -111.40 60.40 111 18 MET A 9 ? ? -53.39 88.63 112 18 PRO A 13 ? ? -69.75 -178.84 113 18 CYS A 52 ? ? -133.39 -69.46 114 18 LYS A 56 ? ? -162.66 105.00 115 18 VAL A 63 ? ? -39.15 122.40 116 18 ASN A 102 ? ? 73.29 42.08 117 19 PRO A 13 ? ? -69.76 -175.45 118 19 CYS A 52 ? ? -134.58 -66.18 119 19 ASP A 99 ? ? -117.82 75.81 120 20 SER A -5 ? ? -66.37 86.05 121 20 SER A -1 ? ? -61.09 98.65 122 20 PRO A 13 ? ? -69.74 -177.61 123 20 CYS A 52 ? ? -53.81 -175.19 124 20 VAL A 63 ? ? -37.43 119.79 125 20 GLN A 92 ? ? -100.99 48.69 #