HEADER RNA BINDING PROTEIN 20-MAY-05 2CQP TITLE SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN OF RNA-BINDING PROTEIN 12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN 12; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: RNA BINDING MOTIF PROTEIN 12, SH3/WW DOMAIN ANCHOR PROTEIN COMPND 6 IN THE NUCLEUS, SWAN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RBM12; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041220-02; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RNA RECOGNITION MOTIF, RRM, RNA BINDING DOMAIN, RBD, RNP, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CQP 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CQP 1 VERSN REVDAT 1 20-NOV-05 2CQP 0 JRNL AUTH S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN OF RNA-BINDING JRNL TITL 2 PROTEIN 12 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CQP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024516. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3MM 13C/15N-PROTEIN; 20MM D REMARK 210 -TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, OLIVIA 1.10.5, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 923 -170.59 -69.74 REMARK 500 1 VAL A 956 100.13 -41.32 REMARK 500 1 ASN A 961 -178.61 -67.95 REMARK 500 1 ASP A 989 39.04 73.33 REMARK 500 1 PRO A 991 87.72 -69.71 REMARK 500 2 VAL A 937 151.10 -45.64 REMARK 500 2 VAL A 956 103.56 -37.25 REMARK 500 2 PRO A 991 92.27 -69.80 REMARK 500 2 SER A1003 149.90 -34.65 REMARK 500 3 ALA A 918 40.72 -89.69 REMARK 500 3 ASN A 932 45.09 72.38 REMARK 500 3 VAL A 956 100.12 -43.87 REMARK 500 3 PRO A 991 83.80 -69.74 REMARK 500 4 SER A 915 160.41 -40.77 REMARK 500 4 GLN A 950 89.61 -69.56 REMARK 500 4 VAL A 956 107.48 -43.87 REMARK 500 4 PRO A 991 85.70 -69.69 REMARK 500 4 SER A1007 44.12 34.52 REMARK 500 5 SER A 915 41.97 -98.02 REMARK 500 5 SER A 916 115.73 -168.28 REMARK 500 5 SER A 919 107.78 -165.34 REMARK 500 5 PRO A 923 88.40 -69.72 REMARK 500 5 VAL A 956 112.28 -35.63 REMARK 500 5 PRO A 991 83.36 -69.71 REMARK 500 6 SER A 916 -63.31 -105.89 REMARK 500 6 GLN A 950 97.33 -60.78 REMARK 500 6 VAL A 956 105.83 -37.04 REMARK 500 6 THR A 967 37.70 -90.32 REMARK 500 6 PRO A 991 85.51 -69.73 REMARK 500 6 SER A1006 98.63 -59.31 REMARK 500 7 SER A 912 42.17 38.95 REMARK 500 7 SER A 913 128.51 -35.96 REMARK 500 7 SER A 920 42.64 71.61 REMARK 500 7 VAL A 956 95.50 -35.99 REMARK 500 7 PRO A 991 81.99 -69.74 REMARK 500 7 SER A1003 177.93 -48.78 REMARK 500 8 SER A 919 45.67 -82.36 REMARK 500 8 GLN A 950 92.31 -69.58 REMARK 500 8 VAL A 956 97.32 -40.00 REMARK 500 8 PRO A 991 84.46 -69.74 REMARK 500 9 SER A 915 -56.89 -120.18 REMARK 500 9 GLN A 950 83.69 -65.59 REMARK 500 9 VAL A 956 114.97 -34.62 REMARK 500 9 PRO A 991 94.61 -69.76 REMARK 500 10 SER A 919 151.17 -48.05 REMARK 500 10 PRO A 923 -176.50 -69.74 REMARK 500 10 VAL A 956 112.12 -34.79 REMARK 500 10 PRO A 991 85.64 -69.80 REMARK 500 11 SER A 916 99.01 -49.60 REMARK 500 11 VAL A 937 155.73 -47.16 REMARK 500 REMARK 500 THIS ENTRY HAS 102 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT008001000.1 RELATED DB: TARGETDB DBREF 2CQP A 918 1002 UNP Q8R4X3 RBM12_MOUSE 918 1002 SEQADV 2CQP GLY A 911 UNP Q8R4X3 CLONING ARTIFACT SEQADV 2CQP SER A 912 UNP Q8R4X3 CLONING ARTIFACT SEQADV 2CQP SER A 913 UNP Q8R4X3 CLONING ARTIFACT SEQADV 2CQP GLY A 914 UNP Q8R4X3 CLONING ARTIFACT SEQADV 2CQP SER A 915 UNP Q8R4X3 CLONING ARTIFACT SEQADV 2CQP SER A 916 UNP Q8R4X3 CLONING ARTIFACT SEQADV 2CQP GLY A 917 UNP Q8R4X3 CLONING ARTIFACT SEQADV 2CQP SER A 1003 UNP Q8R4X3 CLONING ARTIFACT SEQADV 2CQP GLY A 1004 UNP Q8R4X3 CLONING ARTIFACT SEQADV 2CQP PRO A 1005 UNP Q8R4X3 CLONING ARTIFACT SEQADV 2CQP SER A 1006 UNP Q8R4X3 CLONING ARTIFACT SEQADV 2CQP SER A 1007 UNP Q8R4X3 CLONING ARTIFACT SEQADV 2CQP GLY A 1008 UNP Q8R4X3 CLONING ARTIFACT SEQRES 1 A 98 GLY SER SER GLY SER SER GLY ALA SER SER GLY LYS PRO SEQRES 2 A 98 GLY PRO THR ILE ILE LYS VAL GLN ASN MET PRO PHE THR SEQRES 3 A 98 VAL SER ILE ASP GLU ILE LEU ASP PHE PHE TYR GLY TYR SEQRES 4 A 98 GLN VAL ILE PRO GLY SER VAL CYS LEU LYS TYR ASN GLU SEQRES 5 A 98 LYS GLY MET PRO THR GLY GLU ALA MET VAL ALA PHE GLU SEQRES 6 A 98 SER ARG ASP GLU ALA THR ALA ALA VAL ILE ASP LEU ASN SEQRES 7 A 98 ASP ARG PRO ILE GLY SER ARG LYS VAL LYS LEU VAL LEU SEQRES 8 A 98 GLY SER GLY PRO SER SER GLY HELIX 1 1 ILE A 939 PHE A 945 1 7 HELIX 2 2 ARG A 977 ASP A 986 1 10 SHEET 1 A 4 CYS A 957 LYS A 959 0 SHEET 2 A 4 GLU A 969 PHE A 974 -1 O MET A 971 N CYS A 957 SHEET 3 A 4 THR A 926 GLN A 931 -1 N VAL A 930 O ALA A 970 SHEET 4 A 4 LYS A 998 LEU A1001 -1 O LYS A 998 N GLN A 931 SHEET 1 B 2 ARG A 990 ILE A 992 0 SHEET 2 B 2 ARG A 995 VAL A 997 -1 O ARG A 995 N ILE A 992 CISPEP 1 GLY A 1004 PRO A 1005 1 0.02 CISPEP 2 GLY A 1004 PRO A 1005 2 0.03 CISPEP 3 GLY A 1004 PRO A 1005 3 0.07 CISPEP 4 GLY A 1004 PRO A 1005 4 0.06 CISPEP 5 GLY A 1004 PRO A 1005 5 0.01 CISPEP 6 GLY A 1004 PRO A 1005 6 0.11 CISPEP 7 GLY A 1004 PRO A 1005 7 0.15 CISPEP 8 GLY A 1004 PRO A 1005 8 0.05 CISPEP 9 GLY A 1004 PRO A 1005 9 0.02 CISPEP 10 GLY A 1004 PRO A 1005 10 0.13 CISPEP 11 GLY A 1004 PRO A 1005 11 0.00 CISPEP 12 GLY A 1004 PRO A 1005 12 0.14 CISPEP 13 GLY A 1004 PRO A 1005 13 0.12 CISPEP 14 GLY A 1004 PRO A 1005 14 -0.02 CISPEP 15 GLY A 1004 PRO A 1005 15 0.05 CISPEP 16 GLY A 1004 PRO A 1005 16 0.07 CISPEP 17 GLY A 1004 PRO A 1005 17 0.10 CISPEP 18 GLY A 1004 PRO A 1005 18 0.04 CISPEP 19 GLY A 1004 PRO A 1005 19 0.06 CISPEP 20 GLY A 1004 PRO A 1005 20 0.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1