HEADER MEMBRANE PROTEIN 20-MAY-05 2CQQ TITLE SOLUTION STRUCTURE OF RSGI RUH-037, A MYB DNA-BINDING DOMAIN IN HUMAN TITLE 2 CDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNAJ HOMOLOG SUBFAMILY C MEMBER 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MYB DNA-BINDING DOMAIN; COMPND 5 SYNONYM: RSGI RUH-037; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AY225122; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041115-03; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS MEMBRANE PROTEIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.DOI-KATAYAMA,H.HIROTA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CQQ 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CQQ 1 VERSN REVDAT 1 20-NOV-05 2CQQ 0 JRNL AUTH Y.DOI-KATAYAMA,H.HIROTA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-037, A MYB DNA-BINDING DOMAIN JRNL TITL 2 IN HUMAN CDNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CQQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024517. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.55MM MYB DNA-BINDING DOMAIN U REMARK 210 -15N, 13C; 20MM D-TRIS-HCL; REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 170.29 -49.40 REMARK 500 1 GLU A 13 -38.18 -32.89 REMARK 500 1 PRO A 27 -167.85 -69.74 REMARK 500 1 ARG A 33 -73.30 -44.52 REMARK 500 1 VAL A 45 -72.03 -33.92 REMARK 500 1 MET A 65 87.99 -56.79 REMARK 500 2 GLU A 10 -177.77 -59.68 REMARK 500 2 PRO A 27 -176.89 -69.74 REMARK 500 2 ARG A 33 -71.44 -48.78 REMARK 500 2 SER A 58 97.63 -59.44 REMARK 500 3 GLU A 13 -37.97 -33.74 REMARK 500 3 PRO A 27 -174.34 -69.77 REMARK 500 3 ARG A 33 -73.04 -44.15 REMARK 500 3 VAL A 45 -73.85 -38.74 REMARK 500 3 SER A 71 175.87 -58.93 REMARK 500 4 SER A 5 97.97 -66.56 REMARK 500 4 PRO A 9 -178.50 -69.79 REMARK 500 4 PRO A 27 -170.57 -69.76 REMARK 500 4 ARG A 33 -72.25 -46.77 REMARK 500 4 VAL A 45 -75.10 -33.30 REMARK 500 5 SER A 3 105.87 -165.17 REMARK 500 5 SER A 5 -55.03 -120.79 REMARK 500 5 PRO A 27 -169.79 -69.74 REMARK 500 5 ARG A 33 -72.33 -45.92 REMARK 500 5 VAL A 45 -71.39 -44.57 REMARK 500 5 PRO A 69 90.89 -69.82 REMARK 500 6 SER A 5 81.06 -68.24 REMARK 500 6 ALA A 8 145.15 -170.44 REMARK 500 6 PRO A 9 -177.69 -69.73 REMARK 500 6 GLU A 13 -37.42 -33.47 REMARK 500 6 PRO A 27 -174.15 -69.75 REMARK 500 6 ARG A 33 -72.62 -45.11 REMARK 500 6 VAL A 45 -74.48 -46.16 REMARK 500 6 SER A 67 88.86 -67.70 REMARK 500 7 GLU A 10 -177.96 -69.44 REMARK 500 7 GLU A 13 -37.53 -33.32 REMARK 500 7 PRO A 27 -172.58 -69.80 REMARK 500 7 ARG A 33 -73.36 -43.59 REMARK 500 7 VAL A 45 -72.53 -36.00 REMARK 500 7 VAL A 59 174.86 -55.08 REMARK 500 7 PRO A 63 99.81 -69.76 REMARK 500 7 MET A 65 141.36 -174.82 REMARK 500 7 SER A 71 113.48 -167.43 REMARK 500 8 PRO A 9 -177.29 -69.70 REMARK 500 8 GLU A 13 -39.60 -34.83 REMARK 500 8 PRO A 27 -171.12 -69.76 REMARK 500 8 ARG A 33 -73.22 -44.33 REMARK 500 8 VAL A 45 -72.20 -38.93 REMARK 500 9 SER A 3 99.84 -57.93 REMARK 500 9 GLU A 10 -178.09 -69.38 REMARK 500 REMARK 500 THIS ENTRY HAS 121 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002023161.1 RELATED DB: TARGETDB DBREF 2CQQ A 8 66 UNP Q96KC8 DNJC1_HUMAN 327 385 SEQADV 2CQQ GLY A 1 UNP Q96KC8 CLONING ARTIFACT SEQADV 2CQQ SER A 2 UNP Q96KC8 CLONING ARTIFACT SEQADV 2CQQ SER A 3 UNP Q96KC8 CLONING ARTIFACT SEQADV 2CQQ GLY A 4 UNP Q96KC8 CLONING ARTIFACT SEQADV 2CQQ SER A 5 UNP Q96KC8 CLONING ARTIFACT SEQADV 2CQQ SER A 6 UNP Q96KC8 CLONING ARTIFACT SEQADV 2CQQ GLY A 7 UNP Q96KC8 CLONING ARTIFACT SEQADV 2CQQ SER A 67 UNP Q96KC8 CLONING ARTIFACT SEQADV 2CQQ GLY A 68 UNP Q96KC8 CLONING ARTIFACT SEQADV 2CQQ PRO A 69 UNP Q96KC8 CLONING ARTIFACT SEQADV 2CQQ SER A 70 UNP Q96KC8 CLONING ARTIFACT SEQADV 2CQQ SER A 71 UNP Q96KC8 CLONING ARTIFACT SEQADV 2CQQ GLY A 72 UNP Q96KC8 CLONING ARTIFACT SEQRES 1 A 72 GLY SER SER GLY SER SER GLY ALA PRO GLU TRP THR GLU SEQRES 2 A 72 GLU ASP LEU SER GLN LEU THR ARG SER MET VAL LYS PHE SEQRES 3 A 72 PRO GLY GLY THR PRO GLY ARG TRP GLU LYS ILE ALA HIS SEQRES 4 A 72 GLU LEU GLY ARG SER VAL THR ASP VAL THR THR LYS ALA SEQRES 5 A 72 LYS GLN LEU LYS ASP SER VAL THR CYS SER PRO GLY MET SEQRES 6 A 72 VAL SER GLY PRO SER SER GLY HELIX 1 1 GLU A 13 LYS A 25 1 13 HELIX 2 2 ARG A 33 LEU A 41 1 9 HELIX 3 3 VAL A 45 ASP A 57 1 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1