HEADER LIGASE 20-MAY-05 2CQY TITLE SOLUTION STRUCTURE OF B DOMAIN FROM HUMAN PROPIONYL-COA CARBOXYLASE TITLE 2 ALPHA SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROPIONYL-COA CARBOXYLASE ALPHA CHAIN, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: B DOMAIN; COMPND 5 SYNONYM: PCCASE ALPHA SUBUNIT, PROPANOYL-COA:CARBON DIOXIDE LIGASE COMPND 6 ALPHA SUBUNIT; COMPND 7 EC: 6.4.1.3; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PCCA; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040712-08; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS PCCA, B DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.SUETAKE,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 4 29-MAY-24 2CQY 1 REMARK REVDAT 3 09-MAR-22 2CQY 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CQY 1 VERSN REVDAT 1 20-NOV-05 2CQY 0 JRNL AUTH T.SUETAKE,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF B DOMAIN FROM HUMAN PROPIONYL-COA JRNL TITL 2 CARBOXYLASE ALPHA SUBUNIT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CQY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024525. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.17MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; 1MM REMARK 210 D10-DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.927, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATION, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 20 103.03 -44.28 REMARK 500 1 ILE A 102 45.17 -101.48 REMARK 500 1 SER A 103 117.00 -39.95 REMARK 500 2 LEU A 14 109.06 -170.89 REMARK 500 2 GLU A 20 142.72 -173.97 REMARK 500 2 ASP A 28 -34.74 -130.59 REMARK 500 2 MET A 61 -175.63 -57.43 REMARK 500 2 SER A 84 -73.45 -47.76 REMARK 500 2 ARG A 89 109.87 -39.24 REMARK 500 2 PRO A 105 2.89 -69.87 REMARK 500 3 SER A 6 145.24 -170.22 REMARK 500 3 SER A 12 49.16 36.65 REMARK 500 3 LYS A 13 41.42 -95.65 REMARK 500 3 VAL A 21 52.09 34.06 REMARK 500 3 PRO A 25 3.22 -69.72 REMARK 500 3 SER A 84 -65.72 -91.54 REMARK 500 3 PRO A 105 -178.45 -69.75 REMARK 500 3 SER A 107 -62.08 -133.37 REMARK 500 4 LYS A 9 119.23 -167.81 REMARK 500 4 LYS A 13 115.40 -160.47 REMARK 500 4 PRO A 25 2.25 -69.74 REMARK 500 4 LYS A 59 115.52 -39.29 REMARK 500 4 SER A 103 108.46 -43.80 REMARK 500 5 ASP A 8 39.31 35.21 REMARK 500 5 LEU A 15 117.73 -160.76 REMARK 500 5 LYS A 18 141.77 -170.51 REMARK 500 5 ALA A 19 38.73 -95.52 REMARK 500 5 GLU A 20 117.90 -162.48 REMARK 500 5 VAL A 21 35.93 -95.67 REMARK 500 5 PRO A 25 3.01 -69.82 REMARK 500 5 VAL A 30 135.86 -35.26 REMARK 500 5 ALA A 54 42.23 -88.23 REMARK 500 5 PRO A 105 -174.59 -69.68 REMARK 500 6 LYS A 18 52.99 39.54 REMARK 500 6 PHE A 27 107.58 -173.43 REMARK 500 6 MET A 61 -176.47 -57.84 REMARK 500 6 SER A 84 -74.51 -75.67 REMARK 500 6 ARG A 100 98.27 -66.74 REMARK 500 6 SER A 106 45.08 34.35 REMARK 500 7 ILE A 10 29.19 39.01 REMARK 500 7 SER A 12 119.70 -174.66 REMARK 500 7 PHE A 27 134.17 -172.79 REMARK 500 7 TYR A 46 154.08 -48.15 REMARK 500 7 MET A 61 -175.34 -64.93 REMARK 500 7 HIS A 101 43.93 -97.77 REMARK 500 8 SER A 5 146.39 -173.50 REMARK 500 8 ASP A 8 108.57 -173.38 REMARK 500 8 LYS A 13 109.44 -169.51 REMARK 500 8 LYS A 18 43.34 -109.18 REMARK 500 8 PRO A 25 0.48 -69.85 REMARK 500 REMARK 500 THIS ENTRY HAS 151 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002002968.1 RELATED DB: TARGETDB DBREF 2CQY A 8 102 UNP P05165 PCCA_HUMAN 151 245 SEQADV 2CQY GLY A 1 UNP P05165 CLONING ARTIFACT SEQADV 2CQY SER A 2 UNP P05165 CLONING ARTIFACT SEQADV 2CQY SER A 3 UNP P05165 CLONING ARTIFACT SEQADV 2CQY GLY A 4 UNP P05165 CLONING ARTIFACT SEQADV 2CQY SER A 5 UNP P05165 CLONING ARTIFACT SEQADV 2CQY SER A 6 UNP P05165 CLONING ARTIFACT SEQADV 2CQY GLY A 7 UNP P05165 CLONING ARTIFACT SEQADV 2CQY SER A 103 UNP P05165 CLONING ARTIFACT SEQADV 2CQY GLY A 104 UNP P05165 CLONING ARTIFACT SEQADV 2CQY PRO A 105 UNP P05165 CLONING ARTIFACT SEQADV 2CQY SER A 106 UNP P05165 CLONING ARTIFACT SEQADV 2CQY SER A 107 UNP P05165 CLONING ARTIFACT SEQADV 2CQY GLY A 108 UNP P05165 CLONING ARTIFACT SEQRES 1 A 108 GLY SER SER GLY SER SER GLY ASP LYS ILE GLU SER LYS SEQRES 2 A 108 LEU LEU ALA LYS LYS ALA GLU VAL ASN THR ILE PRO GLY SEQRES 3 A 108 PHE ASP GLY VAL VAL LYS ASP ALA GLU GLU ALA VAL ARG SEQRES 4 A 108 ILE ALA ARG GLU ILE GLY TYR PRO VAL MET ILE LYS ALA SEQRES 5 A 108 SER ALA GLY GLY GLY GLY LYS GLY MET ARG ILE ALA TRP SEQRES 6 A 108 ASP ASP GLU GLU THR ARG ASP GLY PHE ARG LEU SER SER SEQRES 7 A 108 GLN GLU ALA ALA SER SER PHE GLY ASP ASP ARG LEU LEU SEQRES 8 A 108 ILE GLU LYS PHE ILE ASP ASN PRO ARG HIS ILE SER GLY SEQRES 9 A 108 PRO SER SER GLY HELIX 1 1 ASP A 33 GLY A 45 1 13 HELIX 2 2 ASP A 66 PHE A 85 1 20 SHEET 1 A 3 ARG A 62 ALA A 64 0 SHEET 2 A 3 VAL A 48 ALA A 52 -1 N VAL A 48 O ALA A 64 SHEET 3 A 3 LEU A 90 LYS A 94 -1 O LEU A 91 N LYS A 51 CISPEP 1 TYR A 46 PRO A 47 1 -0.08 CISPEP 2 TYR A 46 PRO A 47 2 -0.06 CISPEP 3 TYR A 46 PRO A 47 3 -0.15 CISPEP 4 TYR A 46 PRO A 47 4 -0.09 CISPEP 5 TYR A 46 PRO A 47 5 -0.01 CISPEP 6 TYR A 46 PRO A 47 6 -0.09 CISPEP 7 TYR A 46 PRO A 47 7 -0.04 CISPEP 8 TYR A 46 PRO A 47 8 -0.03 CISPEP 9 TYR A 46 PRO A 47 9 -0.04 CISPEP 10 TYR A 46 PRO A 47 10 -0.05 CISPEP 11 TYR A 46 PRO A 47 11 -0.02 CISPEP 12 TYR A 46 PRO A 47 12 -0.01 CISPEP 13 TYR A 46 PRO A 47 13 -0.09 CISPEP 14 TYR A 46 PRO A 47 14 -0.13 CISPEP 15 TYR A 46 PRO A 47 15 -0.08 CISPEP 16 TYR A 46 PRO A 47 16 -0.06 CISPEP 17 TYR A 46 PRO A 47 17 -0.04 CISPEP 18 TYR A 46 PRO A 47 18 -0.15 CISPEP 19 TYR A 46 PRO A 47 19 -0.06 CISPEP 20 TYR A 46 PRO A 47 20 -0.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1