data_2CR5 # _entry.id 2CR5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2CR5 pdb_00002cr5 10.2210/pdb2cr5/pdb RCSB RCSB024532 ? ? WWPDB D_1000024532 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmi002020622.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CR5 _pdbx_database_status.recvd_initial_deposition_date 2005-05-20 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, H.P.' 1 'Hayashi, F.' 2 'Yokoyama, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title 'Solution structure of the UBX domain of D0H8S2298E protein' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, H.P.' 1 ? primary 'Hayashi, F.' 2 ? primary 'Yokoyama, S.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Reproduction 8' _entity.formula_weight 11973.278 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'UBX domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Reproduction 8, D0H8S2298E protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGEVPDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVGYHKSLYRLSTSFPRRALEVEGGS SLEDIGITVDTVLNVEEKEQSSQSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGEVPDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVGYHKSLYRLSTSFPRRALEVEGGS SLEDIGITVDTVLNVEEKEQSSQSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmi002020622.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 GLU n 1 9 VAL n 1 10 PRO n 1 11 ASP n 1 12 LEU n 1 13 PRO n 1 14 GLU n 1 15 GLU n 1 16 PRO n 1 17 SER n 1 18 GLU n 1 19 THR n 1 20 ALA n 1 21 GLU n 1 22 GLU n 1 23 VAL n 1 24 VAL n 1 25 THR n 1 26 VAL n 1 27 ALA n 1 28 LEU n 1 29 ARG n 1 30 CYS n 1 31 PRO n 1 32 ASN n 1 33 GLY n 1 34 ARG n 1 35 VAL n 1 36 LEU n 1 37 ARG n 1 38 ARG n 1 39 ARG n 1 40 PHE n 1 41 PHE n 1 42 LYS n 1 43 SER n 1 44 TRP n 1 45 ASN n 1 46 SER n 1 47 GLN n 1 48 VAL n 1 49 LEU n 1 50 LEU n 1 51 ASP n 1 52 TRP n 1 53 MET n 1 54 MET n 1 55 LYS n 1 56 VAL n 1 57 GLY n 1 58 TYR n 1 59 HIS n 1 60 LYS n 1 61 SER n 1 62 LEU n 1 63 TYR n 1 64 ARG n 1 65 LEU n 1 66 SER n 1 67 THR n 1 68 SER n 1 69 PHE n 1 70 PRO n 1 71 ARG n 1 72 ARG n 1 73 ALA n 1 74 LEU n 1 75 GLU n 1 76 VAL n 1 77 GLU n 1 78 GLY n 1 79 GLY n 1 80 SER n 1 81 SER n 1 82 LEU n 1 83 GLU n 1 84 ASP n 1 85 ILE n 1 86 GLY n 1 87 ILE n 1 88 THR n 1 89 VAL n 1 90 ASP n 1 91 THR n 1 92 VAL n 1 93 LEU n 1 94 ASN n 1 95 VAL n 1 96 GLU n 1 97 GLU n 1 98 LYS n 1 99 GLU n 1 100 GLN n 1 101 SER n 1 102 SER n 1 103 GLN n 1 104 SER n 1 105 GLY n 1 106 PRO n 1 107 SER n 1 108 SER n 1 109 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene 'D0H8S2298E, Rep-8' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'cell free protein synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050111-21 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code UBXD6_MOUSE _struct_ref.pdbx_db_accession Q9QZ49 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EVPDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVGYHKSLYRLSTSFPRRALEVEGGSSLEDIGI TVDTVLNVEEKEQSSQ ; _struct_ref.pdbx_align_begin 182 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2CR5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 103 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9QZ49 _struct_ref_seq.db_align_beg 182 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 277 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 103 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2CR5 GLY A 1 ? UNP Q9QZ49 ? ? 'expression tag' 1 1 1 2CR5 SER A 2 ? UNP Q9QZ49 ? ? 'expression tag' 2 2 1 2CR5 SER A 3 ? UNP Q9QZ49 ? ? 'expression tag' 3 3 1 2CR5 GLY A 4 ? UNP Q9QZ49 ? ? 'expression tag' 4 4 1 2CR5 SER A 5 ? UNP Q9QZ49 ? ? 'expression tag' 5 5 1 2CR5 SER A 6 ? UNP Q9QZ49 ? ? 'expression tag' 6 6 1 2CR5 GLY A 7 ? UNP Q9QZ49 ? ? 'expression tag' 7 7 1 2CR5 SER A 104 ? UNP Q9QZ49 ? ? 'expression tag' 104 8 1 2CR5 GLY A 105 ? UNP Q9QZ49 ? ? 'expression tag' 105 9 1 2CR5 PRO A 106 ? UNP Q9QZ49 ? ? 'expression tag' 106 10 1 2CR5 SER A 107 ? UNP Q9QZ49 ? ? 'expression tag' 107 11 1 2CR5 SER A 108 ? UNP Q9QZ49 ? ? 'expression tag' 108 12 1 2CR5 GLY A 109 ? UNP Q9QZ49 ? ? 'expression tag' 109 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.87mM 13C, 15N-labeled protein; 20mM d-Tris-HCl (pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 INOVA Varian 800 ? 2 INOVA Varian 900 ? # _pdbx_nmr_refine.entry_id 2CR5 _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2CR5 _pdbx_nmr_details.text 'spectrometer_id 1 for 3D_15N_separated_NOESY; spectrometer_id 2 for 3D_13C_separated_NOESY' # _pdbx_nmr_ensemble.entry_id 2CR5 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the lowest energy,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2CR5 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C Varian 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.04 Johnson,B.A. 3 'data analysis' KUJIRA 0.9296 Kobayashi,N. 4 'structure solution' CYANA 2.0.17 Guntert,P. 5 refinement CYANA 2.0.17 Guntert,P. 6 # _exptl.entry_id 2CR5 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2CR5 _struct.title 'Solution structure of the UBX domain of D0H8S2298E protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CR5 _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;UBX domain, Reproduction 8, D0H8S2298E protein, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 46 ? VAL A 56 ? SER A 46 VAL A 56 1 ? 11 HELX_P HELX_P2 2 LEU A 82 ? ILE A 85 ? LEU A 82 ILE A 85 1 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 69 A . ? PHE 69 A PRO 70 A ? PRO 70 A 1 -0.01 2 PHE 69 A . ? PHE 69 A PRO 70 A ? PRO 70 A 2 0.03 3 PHE 69 A . ? PHE 69 A PRO 70 A ? PRO 70 A 3 0.05 4 PHE 69 A . ? PHE 69 A PRO 70 A ? PRO 70 A 4 0.08 5 PHE 69 A . ? PHE 69 A PRO 70 A ? PRO 70 A 5 -0.03 6 PHE 69 A . ? PHE 69 A PRO 70 A ? PRO 70 A 6 -0.03 7 PHE 69 A . ? PHE 69 A PRO 70 A ? PRO 70 A 7 -0.06 8 PHE 69 A . ? PHE 69 A PRO 70 A ? PRO 70 A 8 -0.02 9 PHE 69 A . ? PHE 69 A PRO 70 A ? PRO 70 A 9 0.03 10 PHE 69 A . ? PHE 69 A PRO 70 A ? PRO 70 A 10 0.09 11 PHE 69 A . ? PHE 69 A PRO 70 A ? PRO 70 A 11 -0.01 12 PHE 69 A . ? PHE 69 A PRO 70 A ? PRO 70 A 12 0.04 13 PHE 69 A . ? PHE 69 A PRO 70 A ? PRO 70 A 13 -0.07 14 PHE 69 A . ? PHE 69 A PRO 70 A ? PRO 70 A 14 0.09 15 PHE 69 A . ? PHE 69 A PRO 70 A ? PRO 70 A 15 0.05 16 PHE 69 A . ? PHE 69 A PRO 70 A ? PRO 70 A 16 0.01 17 PHE 69 A . ? PHE 69 A PRO 70 A ? PRO 70 A 17 -0.01 18 PHE 69 A . ? PHE 69 A PRO 70 A ? PRO 70 A 18 -0.03 19 PHE 69 A . ? PHE 69 A PRO 70 A ? PRO 70 A 19 0.00 20 PHE 69 A . ? PHE 69 A PRO 70 A ? PRO 70 A 20 -0.01 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 35 ? PHE A 41 ? VAL A 35 PHE A 41 A 2 VAL A 23 ? ARG A 29 ? VAL A 23 ARG A 29 A 3 THR A 91 ? GLU A 97 ? THR A 91 GLU A 97 A 4 TYR A 63 ? SER A 66 ? TYR A 63 SER A 66 A 5 ARG A 72 ? ALA A 73 ? ARG A 72 ALA A 73 # _database_PDB_matrix.entry_id 2CR5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2CR5 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 PHE 41 41 41 PHE PHE A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 TRP 44 44 44 TRP TRP A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 TRP 52 52 52 TRP TRP A . n A 1 53 MET 53 53 53 MET MET A . n A 1 54 MET 54 54 54 MET MET A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 HIS 59 59 59 HIS HIS A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 PHE 69 69 69 PHE PHE A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 THR 88 88 88 THR THR A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 ASN 94 94 94 ASN ASN A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 GLN 100 100 100 GLN GLN A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 GLN 103 103 103 GLN GLN A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 GLY 109 109 109 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-20 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ;HELIX DETERMINATION METHOD: AUTHOR DETERMINED ; 700 ;SHEET DETERMINATION METHOD: AUTHOR DETERMINED ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 14 ? ? -34.55 120.57 2 1 SER A 46 ? ? -35.23 -35.02 3 1 VAL A 76 ? ? -36.77 153.75 4 1 SER A 102 ? ? -102.14 41.01 5 2 SER A 6 ? ? -63.53 97.97 6 2 PRO A 31 ? ? -69.66 0.76 7 2 SER A 46 ? ? -34.75 -32.64 8 2 SER A 68 ? ? -41.43 163.11 9 2 PHE A 69 ? ? -36.49 123.52 10 2 SER A 81 ? ? -66.00 -179.57 11 2 ASP A 90 ? ? -34.61 126.59 12 2 SER A 101 ? ? -106.21 -69.39 13 3 SER A 3 ? ? -44.55 155.29 14 3 PRO A 10 ? ? -69.78 -172.32 15 3 PRO A 13 ? ? -69.83 -175.24 16 3 PRO A 31 ? ? -69.84 0.53 17 3 SER A 46 ? ? -34.82 -33.25 18 3 ASP A 90 ? ? -36.87 127.00 19 3 PRO A 106 ? ? -69.69 89.34 20 4 SER A 46 ? ? -33.51 -34.71 21 4 VAL A 48 ? ? -36.64 -36.11 22 4 LEU A 62 ? ? -91.14 -62.31 23 4 PHE A 69 ? ? -34.33 119.25 24 4 ASP A 90 ? ? -35.04 106.02 25 4 GLU A 97 ? ? -37.52 150.12 26 4 GLN A 100 ? ? -68.89 83.19 27 4 PRO A 106 ? ? -69.75 1.48 28 4 SER A 108 ? ? -170.08 128.79 29 5 SER A 6 ? ? -65.97 83.43 30 5 GLU A 8 ? ? -65.53 98.96 31 5 SER A 46 ? ? -33.82 -34.30 32 5 VAL A 48 ? ? -38.71 -33.98 33 5 TYR A 58 ? ? -161.54 116.67 34 5 PHE A 69 ? ? -37.31 123.61 35 5 ASP A 90 ? ? -35.97 129.14 36 5 SER A 108 ? ? 36.68 43.92 37 6 PHE A 41 ? ? -59.34 174.01 38 6 SER A 46 ? ? -34.11 -34.33 39 6 PRO A 70 ? ? -69.69 -169.81 40 6 VAL A 76 ? ? -38.49 130.24 41 6 ASP A 90 ? ? -36.45 108.99 42 6 PRO A 106 ? ? -69.77 95.75 43 6 SER A 107 ? ? -90.71 52.21 44 6 SER A 108 ? ? 34.87 50.96 45 7 GLU A 14 ? ? -42.88 107.11 46 7 GLU A 15 ? ? -35.78 143.05 47 7 SER A 17 ? ? -54.91 177.79 48 7 ALA A 20 ? ? -36.20 127.59 49 7 ASN A 32 ? ? -98.66 31.42 50 7 SER A 46 ? ? -31.50 -37.33 51 7 GLU A 97 ? ? -34.13 150.64 52 7 LYS A 98 ? ? -49.99 169.83 53 8 PRO A 10 ? ? -69.72 -179.23 54 8 SER A 46 ? ? -36.03 -30.73 55 8 VAL A 48 ? ? -36.98 -29.74 56 8 ASP A 90 ? ? -35.35 110.00 57 8 SER A 107 ? ? -34.62 112.09 58 9 ALA A 20 ? ? -34.67 116.46 59 9 PHE A 41 ? ? -52.34 171.59 60 9 SER A 46 ? ? -34.53 -32.51 61 9 VAL A 48 ? ? -36.23 -35.28 62 9 ASP A 90 ? ? -34.66 115.85 63 10 SER A 17 ? ? -56.27 -178.76 64 10 ALA A 20 ? ? -39.82 130.00 65 10 PHE A 41 ? ? -52.53 171.22 66 10 SER A 80 ? ? -51.37 102.90 67 10 ASP A 90 ? ? -37.06 119.52 68 10 SER A 102 ? ? -174.35 123.38 69 10 GLN A 103 ? ? -35.92 151.24 70 10 PRO A 106 ? ? -69.79 86.92 71 11 SER A 46 ? ? -39.67 -25.66 72 11 VAL A 48 ? ? -37.23 -33.49 73 11 ASP A 90 ? ? -38.11 116.29 74 11 SER A 101 ? ? -35.77 148.76 75 11 SER A 102 ? ? -101.14 -61.98 76 12 GLU A 14 ? ? -45.13 106.01 77 12 PHE A 41 ? ? -56.98 178.89 78 12 SER A 46 ? ? -34.33 -32.87 79 12 VAL A 48 ? ? -36.21 -35.27 80 12 PHE A 69 ? ? -37.32 123.64 81 12 ASP A 90 ? ? -36.56 129.88 82 13 PRO A 10 ? ? -69.77 -179.68 83 13 GLU A 14 ? ? -35.50 112.88 84 13 GLU A 15 ? ? -36.18 142.99 85 13 PRO A 16 ? ? -69.72 -176.79 86 13 ALA A 20 ? ? -39.72 140.69 87 13 PHE A 41 ? ? -55.47 170.03 88 13 SER A 46 ? ? -33.42 -34.65 89 13 SER A 68 ? ? -44.83 169.59 90 13 PHE A 69 ? ? -39.14 123.16 91 13 ASP A 90 ? ? -34.36 122.38 92 14 GLU A 14 ? ? -53.49 106.04 93 14 GLU A 22 ? ? 35.35 49.60 94 14 PRO A 31 ? ? -69.78 0.00 95 14 SER A 46 ? ? -37.84 -27.69 96 14 LEU A 50 ? ? -39.55 -35.30 97 14 PRO A 70 ? ? -69.83 -169.68 98 14 ASP A 90 ? ? -34.43 109.43 99 14 LYS A 98 ? ? -46.43 163.73 100 14 GLN A 100 ? ? -85.85 42.05 101 15 GLU A 22 ? ? 34.96 41.49 102 15 PHE A 41 ? ? -52.51 172.17 103 15 SER A 46 ? ? -34.12 -33.64 104 15 VAL A 48 ? ? -36.58 -34.07 105 15 PRO A 70 ? ? -69.72 -168.06 106 15 ASP A 90 ? ? -38.88 121.68 107 15 GLU A 99 ? ? 33.77 35.95 108 16 PRO A 13 ? ? -69.67 -178.45 109 16 GLU A 22 ? ? 38.56 34.35 110 16 SER A 46 ? ? -34.33 -36.16 111 16 VAL A 48 ? ? -38.72 -36.20 112 16 PHE A 69 ? ? -37.76 122.17 113 16 VAL A 76 ? ? -54.65 99.62 114 16 SER A 81 ? ? -62.63 -179.76 115 16 ASP A 90 ? ? -52.70 94.84 116 17 ALA A 20 ? ? -46.98 175.18 117 17 GLU A 22 ? ? 34.38 51.65 118 17 PHE A 41 ? ? -58.10 176.30 119 17 SER A 46 ? ? -34.26 -33.12 120 17 SER A 81 ? ? -68.62 -179.10 121 17 ASP A 90 ? ? -34.80 126.30 122 17 SER A 108 ? ? -170.14 121.43 123 18 GLU A 8 ? ? 37.90 31.99 124 18 PRO A 10 ? ? -69.76 -175.85 125 18 GLU A 14 ? ? -39.42 132.10 126 18 SER A 46 ? ? -34.54 -35.25 127 18 LYS A 98 ? ? -35.15 144.95 128 18 SER A 107 ? ? -37.77 150.43 129 19 SER A 17 ? ? -69.41 -174.95 130 19 SER A 46 ? ? -34.69 -34.27 131 19 PHE A 69 ? ? -171.26 136.22 132 19 PRO A 70 ? ? -69.73 -176.82 133 19 GLN A 100 ? ? -166.92 118.93 134 20 GLU A 8 ? ? -86.45 41.88 135 20 GLU A 14 ? ? -36.37 116.46 136 20 ALA A 20 ? ? -37.16 114.59 137 20 PRO A 31 ? ? -69.69 2.82 138 20 PHE A 41 ? ? -49.70 165.52 139 20 SER A 46 ? ? -32.75 -36.13 140 20 VAL A 48 ? ? -38.02 -37.15 141 20 PHE A 69 ? ? -35.31 123.11 142 20 VAL A 76 ? ? -47.40 105.42 143 20 ASP A 90 ? ? -34.59 130.95 144 20 GLU A 97 ? ? -36.00 153.87 145 20 PRO A 106 ? ? -69.67 2.48 #