HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 20-MAY-05 2CR5 TITLE SOLUTION STRUCTURE OF THE UBX DOMAIN OF D0H8S2298E PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPRODUCTION 8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBX DOMAIN; COMPND 5 SYNONYM: REPRODUCTION 8, D0H8S2298E PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: D0H8S2298E, REP-8; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE PROTEIN SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050111-21 KEYWDS UBX DOMAIN, REPRODUCTION 8, D0H8S2298E PROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.P.ZHANG,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 4 09-MAR-22 2CR5 1 REMARK SEQADV REVDAT 3 18-AUG-09 2CR5 1 JRNL TITLE REVDAT 2 24-FEB-09 2CR5 1 VERSN REVDAT 1 20-NOV-05 2CR5 0 JRNL AUTH H.P.ZHANG,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE UBX DOMAIN OF D0H8S2298E PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT,P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CR5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024532. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.87MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL (PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.04, REMARK 210 KUJIRA 0.9296, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SPECTROMETER_ID 1 FOR 3D_15N_SEPARATED_NOESY; REMARK 210 SPECTROMETER_ID 2 FOR 3D_13C_SEPARATED_NOESY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 14 120.57 -34.55 REMARK 500 1 SER A 46 -35.02 -35.23 REMARK 500 1 VAL A 76 153.75 -36.77 REMARK 500 1 SER A 102 41.01 -102.14 REMARK 500 2 SER A 6 97.97 -63.53 REMARK 500 2 PRO A 31 0.76 -69.66 REMARK 500 2 SER A 46 -32.64 -34.75 REMARK 500 2 SER A 68 163.11 -41.43 REMARK 500 2 PHE A 69 123.52 -36.49 REMARK 500 2 SER A 81 -179.57 -66.00 REMARK 500 2 ASP A 90 126.59 -34.61 REMARK 500 2 SER A 101 -69.39 -106.21 REMARK 500 3 SER A 3 155.29 -44.55 REMARK 500 3 PRO A 10 -172.32 -69.78 REMARK 500 3 PRO A 13 -175.24 -69.83 REMARK 500 3 PRO A 31 0.53 -69.84 REMARK 500 3 SER A 46 -33.25 -34.82 REMARK 500 3 ASP A 90 127.00 -36.87 REMARK 500 3 PRO A 106 89.34 -69.69 REMARK 500 4 SER A 46 -34.71 -33.51 REMARK 500 4 VAL A 48 -36.11 -36.64 REMARK 500 4 LEU A 62 -62.31 -91.14 REMARK 500 4 PHE A 69 119.25 -34.33 REMARK 500 4 ASP A 90 106.02 -35.04 REMARK 500 4 GLU A 97 150.12 -37.52 REMARK 500 4 GLN A 100 83.19 -68.89 REMARK 500 4 PRO A 106 1.48 -69.75 REMARK 500 4 SER A 108 128.79 -170.08 REMARK 500 5 SER A 6 83.43 -65.97 REMARK 500 5 GLU A 8 98.96 -65.53 REMARK 500 5 SER A 46 -34.30 -33.82 REMARK 500 5 VAL A 48 -33.98 -38.71 REMARK 500 5 TYR A 58 116.67 -161.54 REMARK 500 5 PHE A 69 123.61 -37.31 REMARK 500 5 ASP A 90 129.14 -35.97 REMARK 500 5 SER A 108 43.92 36.68 REMARK 500 6 PHE A 41 174.01 -59.34 REMARK 500 6 SER A 46 -34.33 -34.11 REMARK 500 6 PRO A 70 -169.81 -69.69 REMARK 500 6 VAL A 76 130.24 -38.49 REMARK 500 6 ASP A 90 108.99 -36.45 REMARK 500 6 PRO A 106 95.75 -69.77 REMARK 500 6 SER A 107 52.21 -90.71 REMARK 500 6 SER A 108 50.96 34.87 REMARK 500 7 GLU A 14 107.11 -42.88 REMARK 500 7 GLU A 15 143.05 -35.78 REMARK 500 7 SER A 17 177.79 -54.91 REMARK 500 7 ALA A 20 127.59 -36.20 REMARK 500 7 ASN A 32 31.42 -98.66 REMARK 500 7 SER A 46 -37.33 -31.50 REMARK 500 REMARK 500 THIS ENTRY HAS 145 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMI002020622.1 RELATED DB: TARGETDB DBREF 2CR5 A 8 103 UNP Q9QZ49 UBXD6_MOUSE 182 277 SEQADV 2CR5 GLY A 1 UNP Q9QZ49 EXPRESSION TAG SEQADV 2CR5 SER A 2 UNP Q9QZ49 EXPRESSION TAG SEQADV 2CR5 SER A 3 UNP Q9QZ49 EXPRESSION TAG SEQADV 2CR5 GLY A 4 UNP Q9QZ49 EXPRESSION TAG SEQADV 2CR5 SER A 5 UNP Q9QZ49 EXPRESSION TAG SEQADV 2CR5 SER A 6 UNP Q9QZ49 EXPRESSION TAG SEQADV 2CR5 GLY A 7 UNP Q9QZ49 EXPRESSION TAG SEQADV 2CR5 SER A 104 UNP Q9QZ49 EXPRESSION TAG SEQADV 2CR5 GLY A 105 UNP Q9QZ49 EXPRESSION TAG SEQADV 2CR5 PRO A 106 UNP Q9QZ49 EXPRESSION TAG SEQADV 2CR5 SER A 107 UNP Q9QZ49 EXPRESSION TAG SEQADV 2CR5 SER A 108 UNP Q9QZ49 EXPRESSION TAG SEQADV 2CR5 GLY A 109 UNP Q9QZ49 EXPRESSION TAG SEQRES 1 A 109 GLY SER SER GLY SER SER GLY GLU VAL PRO ASP LEU PRO SEQRES 2 A 109 GLU GLU PRO SER GLU THR ALA GLU GLU VAL VAL THR VAL SEQRES 3 A 109 ALA LEU ARG CYS PRO ASN GLY ARG VAL LEU ARG ARG ARG SEQRES 4 A 109 PHE PHE LYS SER TRP ASN SER GLN VAL LEU LEU ASP TRP SEQRES 5 A 109 MET MET LYS VAL GLY TYR HIS LYS SER LEU TYR ARG LEU SEQRES 6 A 109 SER THR SER PHE PRO ARG ARG ALA LEU GLU VAL GLU GLY SEQRES 7 A 109 GLY SER SER LEU GLU ASP ILE GLY ILE THR VAL ASP THR SEQRES 8 A 109 VAL LEU ASN VAL GLU GLU LYS GLU GLN SER SER GLN SER SEQRES 9 A 109 GLY PRO SER SER GLY HELIX 1 1 SER A 46 VAL A 56 1 11 HELIX 2 2 LEU A 82 ILE A 85 1 4 SHEET 1 A 5 VAL A 35 PHE A 41 0 SHEET 2 A 5 VAL A 23 ARG A 29 -1 SHEET 3 A 5 THR A 91 GLU A 97 1 SHEET 4 A 5 TYR A 63 SER A 66 -1 SHEET 5 A 5 ARG A 72 ALA A 73 -1 CISPEP 1 PHE A 69 PRO A 70 1 -0.01 CISPEP 2 PHE A 69 PRO A 70 2 0.03 CISPEP 3 PHE A 69 PRO A 70 3 0.05 CISPEP 4 PHE A 69 PRO A 70 4 0.08 CISPEP 5 PHE A 69 PRO A 70 5 -0.03 CISPEP 6 PHE A 69 PRO A 70 6 -0.03 CISPEP 7 PHE A 69 PRO A 70 7 -0.06 CISPEP 8 PHE A 69 PRO A 70 8 -0.02 CISPEP 9 PHE A 69 PRO A 70 9 0.03 CISPEP 10 PHE A 69 PRO A 70 10 0.09 CISPEP 11 PHE A 69 PRO A 70 11 -0.01 CISPEP 12 PHE A 69 PRO A 70 12 0.04 CISPEP 13 PHE A 69 PRO A 70 13 -0.07 CISPEP 14 PHE A 69 PRO A 70 14 0.09 CISPEP 15 PHE A 69 PRO A 70 15 0.05 CISPEP 16 PHE A 69 PRO A 70 16 0.01 CISPEP 17 PHE A 69 PRO A 70 17 -0.01 CISPEP 18 PHE A 69 PRO A 70 18 -0.03 CISPEP 19 PHE A 69 PRO A 70 19 0.00 CISPEP 20 PHE A 69 PRO A 70 20 -0.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1