data_2CRC # _entry.id 2CRC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2CRC pdb_00002crc 10.2210/pdb2crc/pdb RCSB RCSB024539 ? ? WWPDB D_1000024539 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsi002003028.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CRC _pdbx_database_status.recvd_initial_deposition_date 2005-05-20 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, H.P.' 1 'Hayashi, F.' 2 'Yokoyama, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title 'Solution structure of the zf-RanBP domain of the protein HBV associated factor' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, H.P.' 1 ? primary 'Hayashi, F.' 2 ? primary 'Yokoyama, S.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ubiquitin conjugating enzyme 7 interacting protein 3' 5338.947 1 ? ? 'zf-RanBP domain' ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Hepatitis B virus X-associated protein 4, HBV associated factor 4' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSSGSSGPVGWQCPGCTFINKPTRPGCEMCCRARPEAYQVPASYQPSGPSSG _entity_poly.pdbx_seq_one_letter_code_can GSSGSSGPVGWQCPGCTFINKPTRPGCEMCCRARPEAYQVPASYQPSGPSSG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsi002003028.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 PRO n 1 9 VAL n 1 10 GLY n 1 11 TRP n 1 12 GLN n 1 13 CYS n 1 14 PRO n 1 15 GLY n 1 16 CYS n 1 17 THR n 1 18 PHE n 1 19 ILE n 1 20 ASN n 1 21 LYS n 1 22 PRO n 1 23 THR n 1 24 ARG n 1 25 PRO n 1 26 GLY n 1 27 CYS n 1 28 GLU n 1 29 MET n 1 30 CYS n 1 31 CYS n 1 32 ARG n 1 33 ALA n 1 34 ARG n 1 35 PRO n 1 36 GLU n 1 37 ALA n 1 38 TYR n 1 39 GLN n 1 40 VAL n 1 41 PRO n 1 42 ALA n 1 43 SER n 1 44 TYR n 1 45 GLN n 1 46 PRO n 1 47 SER n 1 48 GLY n 1 49 PRO n 1 50 SER n 1 51 SER n 1 52 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene UBCE7IP3 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P041101-11 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code UB7I3_HUMAN _struct_ref.pdbx_db_accession Q9BYM8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code PVGWQCPGCTFINKPTRPGCEMCCRARPEAYQVPASYQP _struct_ref.pdbx_align_begin 184 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2CRC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 46 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9BYM8 _struct_ref_seq.db_align_beg 184 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 222 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 46 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2CRC GLY A 1 ? UNP Q9BYM8 ? ? 'cloning artifact' 1 1 1 2CRC SER A 2 ? UNP Q9BYM8 ? ? 'cloning artifact' 2 2 1 2CRC SER A 3 ? UNP Q9BYM8 ? ? 'cloning artifact' 3 3 1 2CRC GLY A 4 ? UNP Q9BYM8 ? ? 'cloning artifact' 4 4 1 2CRC SER A 5 ? UNP Q9BYM8 ? ? 'cloning artifact' 5 5 1 2CRC SER A 6 ? UNP Q9BYM8 ? ? 'cloning artifact' 6 6 1 2CRC GLY A 7 ? UNP Q9BYM8 ? ? 'cloning artifact' 7 7 1 2CRC SER A 47 ? UNP Q9BYM8 ? ? 'cloning artifact' 47 8 1 2CRC GLY A 48 ? UNP Q9BYM8 ? ? 'cloning artifact' 48 9 1 2CRC PRO A 49 ? UNP Q9BYM8 ? ? 'cloning artifact' 49 10 1 2CRC SER A 50 ? UNP Q9BYM8 ? ? 'cloning artifact' 50 11 1 2CRC SER A 51 ? UNP Q9BYM8 ? ? 'cloning artifact' 51 12 1 2CRC GLY A 52 ? UNP Q9BYM8 ? ? 'cloning artifact' 52 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2.17mM 13C, 15N-labeled protein; 20mM d-Tris-HCl (pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3, 0.05mM ZnCl2, 0.1mM NTA' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2CRC _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2CRC _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2CRC _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C Varian 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.04 Johnson,B.A. 3 'data analysis' KUJIRA 0.9296 Kobayashi,N. 4 'structure solution' CYANA 2.0.17 Guntert,P. 5 refinement CYANA 2.0.17 Guntert,P. 6 # _exptl.entry_id 2CRC _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2CRC _struct.title 'Solution structure of the zf-RanBP domain of the protein HBV associated factor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CRC _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text ;zf-RanBP domain, Ubiquitin conjugating enzyme 7 interacting protein 3, Hepatitis B virus X-associated protein 4, HBV associated factor 4, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, LIGASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 13 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 13 A ZN 401 1_555 ? ? ? ? ? ? ? 2.352 ? ? metalc2 metalc ? ? A CYS 16 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 16 A ZN 401 1_555 ? ? ? ? ? ? ? 2.250 ? ? metalc3 metalc ? ? A CYS 27 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 27 A ZN 401 1_555 ? ? ? ? ? ? ? 2.253 ? ? metalc4 metalc ? ? A CYS 30 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 30 A ZN 401 1_555 ? ? ? ? ? ? ? 2.239 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ZN _struct_site.pdbx_auth_seq_id 401 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE ZN A 401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 13 ? CYS A 13 . ? 1_555 ? 2 AC1 4 CYS A 16 ? CYS A 16 . ? 1_555 ? 3 AC1 4 CYS A 27 ? CYS A 27 . ? 1_555 ? 4 AC1 4 CYS A 30 ? CYS A 30 . ? 1_555 ? # _database_PDB_matrix.entry_id 2CRC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2CRC _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 TRP 11 11 11 TRP TRP A . n A 1 12 GLN 12 12 12 GLN GLN A . n A 1 13 CYS 13 13 13 CYS CYS A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 CYS 16 16 16 CYS CYS A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 CYS 27 27 27 CYS CYS A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 MET 29 29 29 MET MET A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 CYS 31 31 31 CYS CYS A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 TYR 38 38 38 TYR TYR A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 TYR 44 44 44 TYR TYR A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 PRO 49 49 49 PRO PRO A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 GLY 52 52 52 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ZN _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id ZN _pdbx_nonpoly_scheme.auth_mon_id ZN _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 13 ? A CYS 13 ? 1_555 ZN ? B ZN . ? A ZN 401 ? 1_555 SG ? A CYS 16 ? A CYS 16 ? 1_555 104.7 ? 2 SG ? A CYS 13 ? A CYS 13 ? 1_555 ZN ? B ZN . ? A ZN 401 ? 1_555 SG ? A CYS 27 ? A CYS 27 ? 1_555 104.7 ? 3 SG ? A CYS 16 ? A CYS 16 ? 1_555 ZN ? B ZN . ? A ZN 401 ? 1_555 SG ? A CYS 27 ? A CYS 27 ? 1_555 111.0 ? 4 SG ? A CYS 13 ? A CYS 13 ? 1_555 ZN ? B ZN . ? A ZN 401 ? 1_555 SG ? A CYS 30 ? A CYS 30 ? 1_555 105.1 ? 5 SG ? A CYS 16 ? A CYS 16 ? 1_555 ZN ? B ZN . ? A ZN 401 ? 1_555 SG ? A CYS 30 ? A CYS 30 ? 1_555 118.1 ? 6 SG ? A CYS 27 ? A CYS 27 ? 1_555 ZN ? B ZN . ? A ZN 401 ? 1_555 SG ? A CYS 30 ? A CYS 30 ? 1_555 111.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-20 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 5 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 6 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 16 4 'Structure model' '_struct_ref_seq_dif.details' 17 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 18 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 19 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 14 ? ? -69.76 5.34 2 1 ILE A 19 ? ? -33.10 92.82 3 1 PRO A 25 ? ? -69.78 3.73 4 1 MET A 29 ? ? -70.12 -77.49 5 1 CYS A 31 ? ? 34.53 32.76 6 1 ALA A 33 ? ? -35.59 150.59 7 1 TYR A 38 ? ? -45.51 161.77 8 1 PRO A 41 ? ? -69.80 91.53 9 1 ALA A 42 ? ? -41.97 164.00 10 1 PRO A 46 ? ? -69.75 3.11 11 2 PRO A 14 ? ? -69.76 5.62 12 2 ILE A 19 ? ? -32.93 96.56 13 2 LYS A 21 ? ? -39.38 149.03 14 2 PRO A 25 ? ? -69.77 3.85 15 2 MET A 29 ? ? -67.62 -77.02 16 2 CYS A 31 ? ? 36.64 29.47 17 2 PRO A 41 ? ? -69.72 -177.57 18 3 PRO A 8 ? ? -69.75 -179.04 19 3 PRO A 14 ? ? -69.76 5.71 20 3 ILE A 19 ? ? -33.06 93.48 21 3 LYS A 21 ? ? -37.83 147.37 22 3 PRO A 25 ? ? -69.83 3.67 23 3 MET A 29 ? ? -69.58 -77.04 24 3 CYS A 31 ? ? 34.54 32.69 25 3 ALA A 33 ? ? -33.55 148.86 26 3 PRO A 46 ? ? -69.74 2.45 27 3 SER A 50 ? ? -89.87 42.54 28 4 PRO A 14 ? ? -69.74 5.62 29 4 ILE A 19 ? ? -34.03 94.23 30 4 LYS A 21 ? ? -39.91 148.92 31 4 PRO A 25 ? ? -69.72 3.93 32 4 MET A 29 ? ? -67.13 -76.94 33 4 CYS A 31 ? ? 33.65 34.15 34 4 ALA A 33 ? ? -39.40 136.29 35 4 ALA A 42 ? ? -50.89 170.04 36 5 CYS A 13 ? ? -38.38 125.75 37 5 PRO A 14 ? ? -69.82 5.06 38 5 ILE A 19 ? ? -33.31 94.12 39 5 PRO A 25 ? ? -69.69 2.56 40 5 MET A 29 ? ? -68.35 -77.48 41 5 CYS A 31 ? ? 34.21 33.14 42 5 ALA A 33 ? ? -36.82 151.43 43 5 TYR A 38 ? ? -45.74 156.53 44 5 SER A 43 ? ? -37.72 -29.02 45 6 SER A 2 ? ? -163.53 119.65 46 6 PRO A 8 ? ? -69.74 -178.92 47 6 PRO A 14 ? ? -69.76 5.60 48 6 ILE A 19 ? ? -33.33 92.76 49 6 PRO A 22 ? ? -69.78 1.41 50 6 PRO A 25 ? ? -69.72 3.64 51 6 MET A 29 ? ? -69.01 -76.90 52 6 CYS A 31 ? ? 33.03 35.79 53 6 ALA A 33 ? ? -35.89 149.46 54 6 PRO A 41 ? ? -69.77 89.88 55 6 GLN A 45 ? ? -36.21 98.95 56 6 PRO A 46 ? ? -69.80 -179.33 57 6 SER A 47 ? ? -81.14 47.61 58 7 SER A 3 ? ? -40.88 158.94 59 7 PRO A 14 ? ? -69.76 5.68 60 7 ILE A 19 ? ? -33.46 93.79 61 7 PRO A 25 ? ? -69.74 3.40 62 7 MET A 29 ? ? -66.99 -76.91 63 7 CYS A 31 ? ? 32.65 36.61 64 7 ALA A 33 ? ? -32.86 145.84 65 7 PRO A 46 ? ? -69.79 -172.06 66 8 PRO A 8 ? ? -69.85 -176.64 67 8 VAL A 9 ? ? -55.68 178.92 68 8 PRO A 14 ? ? -69.70 5.83 69 8 ILE A 19 ? ? -33.09 94.02 70 8 PRO A 25 ? ? -69.78 3.55 71 8 MET A 29 ? ? -67.58 -76.52 72 8 CYS A 31 ? ? 33.99 33.61 73 8 ALA A 33 ? ? -38.77 149.54 74 8 TYR A 38 ? ? -44.52 160.26 75 8 SER A 43 ? ? -78.69 49.26 76 8 PRO A 46 ? ? -69.76 -174.16 77 8 SER A 47 ? ? -84.60 36.11 78 9 PRO A 8 ? ? -69.78 -175.87 79 9 CYS A 13 ? ? -38.58 127.30 80 9 PRO A 14 ? ? -69.79 5.89 81 9 ILE A 19 ? ? -34.61 98.55 82 9 PRO A 25 ? ? -69.75 4.66 83 9 MET A 29 ? ? -68.18 -76.97 84 9 CYS A 31 ? ? 37.07 29.78 85 10 PRO A 8 ? ? -69.72 -178.54 86 10 PRO A 14 ? ? -69.69 5.30 87 10 ILE A 19 ? ? -33.45 95.84 88 10 LYS A 21 ? ? -39.66 149.18 89 10 PRO A 25 ? ? -69.73 3.73 90 10 MET A 29 ? ? -68.61 -77.24 91 10 CYS A 31 ? ? 33.63 34.04 92 10 SER A 43 ? ? -82.88 38.82 93 10 PRO A 46 ? ? -69.71 7.11 94 10 SER A 47 ? ? 74.92 52.83 95 11 PRO A 14 ? ? -69.81 5.55 96 11 ILE A 19 ? ? -32.73 95.07 97 11 PRO A 22 ? ? -69.78 3.25 98 11 PRO A 25 ? ? -69.75 3.79 99 11 MET A 29 ? ? -68.20 -77.39 100 11 CYS A 31 ? ? 34.14 35.07 101 11 ALA A 33 ? ? -38.63 147.95 102 11 SER A 43 ? ? -81.43 44.67 103 11 PRO A 46 ? ? -69.79 -179.17 104 12 SER A 2 ? ? -82.76 42.74 105 12 PRO A 14 ? ? -69.73 5.14 106 12 ILE A 19 ? ? -33.35 95.73 107 12 LYS A 21 ? ? -37.89 148.58 108 12 PRO A 25 ? ? -69.73 3.48 109 12 MET A 29 ? ? -65.89 -77.01 110 12 CYS A 31 ? ? 33.57 35.73 111 12 ALA A 33 ? ? -32.16 146.74 112 12 TYR A 44 ? ? -38.55 143.78 113 12 PRO A 46 ? ? -69.71 2.91 114 12 PRO A 49 ? ? -69.77 87.53 115 13 PRO A 14 ? ? -69.71 5.88 116 13 ILE A 19 ? ? -34.00 92.71 117 13 LYS A 21 ? ? -42.45 152.42 118 13 PRO A 25 ? ? -69.75 3.90 119 13 MET A 29 ? ? -68.12 -77.13 120 13 CYS A 31 ? ? 33.14 35.51 121 13 PRO A 41 ? ? -69.76 97.73 122 13 ALA A 42 ? ? -47.67 173.21 123 13 GLN A 45 ? ? -39.36 151.46 124 13 PRO A 46 ? ? -69.76 -179.50 125 13 PRO A 49 ? ? -69.75 96.75 126 14 PRO A 8 ? ? -69.74 -176.85 127 14 PRO A 14 ? ? -69.78 5.95 128 14 ILE A 19 ? ? -34.41 93.23 129 14 LYS A 21 ? ? -41.14 152.08 130 14 PRO A 25 ? ? -69.76 3.97 131 14 MET A 29 ? ? -69.25 -77.40 132 14 CYS A 31 ? ? 33.21 35.74 133 14 ALA A 33 ? ? -36.85 147.93 134 14 PRO A 41 ? ? -69.75 98.66 135 14 ALA A 42 ? ? -46.77 166.07 136 14 PRO A 46 ? ? -69.71 -163.63 137 14 PRO A 49 ? ? -69.77 2.56 138 14 SER A 50 ? ? -34.75 111.29 139 15 SER A 5 ? ? -96.36 -61.45 140 15 PRO A 14 ? ? -69.73 5.45 141 15 ILE A 19 ? ? -32.96 95.29 142 15 PRO A 25 ? ? -69.80 3.92 143 15 MET A 29 ? ? -70.05 -77.33 144 15 CYS A 31 ? ? 34.20 33.91 145 15 ALA A 42 ? ? -49.02 179.52 146 15 SER A 43 ? ? -33.37 95.89 147 15 PRO A 46 ? ? -69.79 -179.97 148 15 SER A 51 ? ? 35.07 49.40 149 16 VAL A 9 ? ? -54.02 177.84 150 16 CYS A 13 ? ? -37.92 127.68 151 16 PRO A 14 ? ? -69.82 5.45 152 16 ILE A 19 ? ? -53.55 84.08 153 16 LYS A 21 ? ? -39.50 150.16 154 16 PRO A 25 ? ? -69.82 3.65 155 16 MET A 29 ? ? -70.78 -77.48 156 16 CYS A 31 ? ? 33.67 34.51 157 16 ALA A 33 ? ? -33.35 138.40 158 16 PRO A 46 ? ? -69.75 1.89 159 17 PRO A 14 ? ? -69.82 4.64 160 17 ILE A 19 ? ? -54.70 82.22 161 17 LYS A 21 ? ? -43.61 152.51 162 17 PRO A 25 ? ? -69.81 4.68 163 17 MET A 29 ? ? -70.63 -77.98 164 17 CYS A 31 ? ? 34.26 36.38 165 17 ALA A 33 ? ? -32.65 134.81 166 17 SER A 43 ? ? -59.18 93.23 167 18 SER A 2 ? ? -90.50 42.15 168 18 PRO A 14 ? ? -69.78 5.74 169 18 ILE A 19 ? ? -33.32 97.27 170 18 PRO A 25 ? ? -69.78 3.94 171 18 MET A 29 ? ? -66.92 -77.08 172 18 CYS A 31 ? ? 33.64 34.70 173 18 GLN A 45 ? ? -36.96 120.30 174 18 PRO A 49 ? ? -69.76 -178.85 175 19 PRO A 8 ? ? -69.74 -179.33 176 19 PRO A 14 ? ? -69.81 6.07 177 19 ILE A 19 ? ? -33.80 97.55 178 19 PRO A 22 ? ? -69.72 2.78 179 19 PRO A 25 ? ? -69.74 4.08 180 19 MET A 29 ? ? -70.59 -76.89 181 19 CYS A 31 ? ? 36.80 30.18 182 19 TYR A 38 ? ? -41.59 155.69 183 19 PRO A 46 ? ? -69.82 2.76 184 19 PRO A 49 ? ? -69.80 0.61 185 20 PRO A 8 ? ? -69.83 -179.83 186 20 PRO A 14 ? ? -69.76 5.76 187 20 ILE A 19 ? ? -33.45 94.84 188 20 PRO A 22 ? ? -69.78 2.75 189 20 PRO A 25 ? ? -69.79 3.74 190 20 MET A 29 ? ? -69.69 -77.29 191 20 CYS A 31 ? ? 33.61 34.55 192 20 ALA A 33 ? ? -36.22 150.74 193 20 ALA A 42 ? ? -49.96 -178.08 194 20 SER A 43 ? ? -33.27 98.41 195 20 PRO A 46 ? ? -69.75 -173.33 196 20 PRO A 49 ? ? -69.77 96.55 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #