HEADER CELL ADHESION 20-MAY-05 2CRM TITLE SOLUTION STRUCTURE OF THE FORTH FNIII DOMAIN OF HUMAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBRONECTIN TYPE-III DOMAIN CONTAINING PROTEIN 3A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FN3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FNDC3, KIAA0970; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040628-02; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS FIBRONECTIN TYPE III DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.IZUMI,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CRM 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CRM 1 VERSN REVDAT 1 20-NOV-05 2CRM 0 JRNL AUTH K.IZUMI,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FORTH FNIII DOMAIN OF HUMAN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DELTA NMR 4.3, CYANA 2.0.17 REMARK 3 AUTHORS : JEOL (DELTA NMR), GUNTERT,P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CRM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024547. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.79MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; 1MM REMARK 210 DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : ECA REMARK 210 SPECTROMETER MANUFACTURER : JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9296, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 13 51.03 34.02 REMARK 500 1 SER A 34 107.39 -173.69 REMARK 500 1 ILE A 50 142.58 -34.62 REMARK 500 1 ASN A 64 99.07 -62.38 REMARK 500 1 THR A 74 122.51 -37.69 REMARK 500 1 ARG A 75 47.35 -81.50 REMARK 500 1 ASP A 97 -38.37 -34.60 REMARK 500 1 ALA A 102 145.63 -35.77 REMARK 500 1 GLU A 105 163.89 -44.94 REMARK 500 1 SER A 118 -53.87 -125.56 REMARK 500 2 SER A 2 117.26 -169.89 REMARK 500 2 SER A 6 -70.97 -130.90 REMARK 500 2 PRO A 15 -175.36 -69.84 REMARK 500 2 PRO A 18 -163.86 -69.71 REMARK 500 2 PRO A 21 -168.17 -69.74 REMARK 500 2 SER A 32 -28.85 -36.99 REMARK 500 2 HIS A 33 -69.70 -95.27 REMARK 500 2 ASP A 44 41.57 -97.54 REMARK 500 2 ILE A 50 150.45 -37.58 REMARK 500 2 ASN A 64 47.10 -100.36 REMARK 500 2 ARG A 75 46.35 -94.73 REMARK 500 2 GLU A 76 140.97 -173.43 REMARK 500 2 SER A 104 178.07 -52.48 REMARK 500 2 SER A 118 130.72 -34.58 REMARK 500 3 PRO A 15 -170.51 -69.73 REMARK 500 3 SER A 34 119.78 -175.22 REMARK 500 3 ASN A 64 43.95 -98.85 REMARK 500 3 THR A 74 135.48 -33.57 REMARK 500 3 ASP A 97 143.49 -35.85 REMARK 500 3 SER A 104 171.35 -59.84 REMARK 500 3 GLU A 105 170.33 -50.80 REMARK 500 4 THR A 12 54.22 -106.29 REMARK 500 4 PRO A 15 -168.17 -69.73 REMARK 500 4 PRO A 21 -167.06 -69.67 REMARK 500 4 SER A 32 -36.80 -33.08 REMARK 500 4 HIS A 33 -71.09 -85.86 REMARK 500 4 ASP A 44 119.54 -174.38 REMARK 500 4 ASN A 45 44.84 -88.41 REMARK 500 4 ILE A 50 146.15 -35.87 REMARK 500 4 THR A 74 140.63 -36.64 REMARK 500 4 ARG A 75 40.85 -96.07 REMARK 500 4 GLU A 76 147.11 -173.67 REMARK 500 4 GLU A 105 154.72 -45.36 REMARK 500 4 PRO A 117 2.82 -69.79 REMARK 500 4 SER A 119 106.68 -51.86 REMARK 500 5 SER A 2 41.38 -108.49 REMARK 500 5 PRO A 15 -174.06 -69.70 REMARK 500 5 SER A 34 116.88 -175.06 REMARK 500 5 ALA A 73 -66.40 -99.07 REMARK 500 5 THR A 74 140.33 -33.99 REMARK 500 REMARK 500 THIS ENTRY HAS 236 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002100947.5 RELATED DB: TARGETDB DBREF 2CRM A 8 114 UNP Q9Y2H6 FNDC3_HUMAN 490 596 SEQADV 2CRM GLY A 1 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM SER A 2 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM SER A 3 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM GLY A 4 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM SER A 5 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM SER A 6 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM GLY A 7 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM SER A 115 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM GLY A 116 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM PRO A 117 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM SER A 118 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM SER A 119 UNP Q9Y2H6 CLONING ARTIFACT SEQADV 2CRM GLY A 120 UNP Q9Y2H6 CLONING ARTIFACT SEQRES 1 A 120 GLY SER SER GLY SER SER GLY VAL VAL GLU PHE THR THR SEQRES 2 A 120 CYS PRO ASP LYS PRO GLY ILE PRO VAL LYS PRO SER VAL SEQRES 3 A 120 LYS GLY LYS ILE HIS SER HIS SER PHE LYS ILE THR TRP SEQRES 4 A 120 ASP PRO PRO LYS ASP ASN GLY GLY ALA THR ILE ASN LYS SEQRES 5 A 120 TYR VAL VAL GLU MET ALA GLU GLY SER ASN GLY ASN LYS SEQRES 6 A 120 TRP GLU MET ILE TYR SER GLY ALA THR ARG GLU HIS LEU SEQRES 7 A 120 CYS ASP ARG LEU ASN PRO GLY CYS PHE TYR ARG LEU ARG SEQRES 8 A 120 VAL TYR CYS ILE SER ASP GLY GLY GLN SER ALA VAL SER SEQRES 9 A 120 GLU SER LEU LEU VAL GLN THR PRO ALA VAL SER GLY PRO SEQRES 10 A 120 SER SER GLY SHEET 1 A 3 SER A 25 HIS A 31 0 SHEET 2 A 3 SER A 34 THR A 38 -1 O LYS A 36 N LYS A 27 SHEET 3 A 3 GLU A 76 CYS A 79 -1 O CYS A 79 N PHE A 35 SHEET 1 B 4 GLU A 67 TYR A 70 0 SHEET 2 B 4 LYS A 52 GLU A 59 -1 N VAL A 55 O ILE A 69 SHEET 3 B 4 TYR A 88 SER A 96 -1 O ARG A 89 N ALA A 58 SHEET 4 B 4 GLY A 99 GLN A 100 -1 O GLY A 99 N SER A 96 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1