HEADER PROTEIN TRANSPORT 20-MAY-05 2CRR TITLE SOLUTION STRUCTURE OF ARFGAP DOMAIN FROM HUMAN SMAP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: STROMAL MEMBRANE-ASSOCIATED PROTEIN SMAP1B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ARFGAP DOMAIN; COMPND 5 SYNONYM: SMAP1, HYPOTHETICAL PROTEIN OTTHUMP00000039271; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: OTTHUMP00000039271, GD:RP1-104A17.1-001, RP1-104A17.1-004; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040628-12; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS ARFGAP DOMAIN, SMAP1, ZINC FINGER, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN KEYWDS 4 TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.SUETAKE,M.SATO,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CRR 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2CRR 1 VERSN REVDAT 1 20-NOV-05 2CRR 0 JRNL AUTH T.SUETAKE,M.SATO,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF ARFGAP DOMAIN FROM HUMAN SMAP1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CRR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024551. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.27MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; 2MM REMARK 210 D10-DTT; 0.02% NAN3; 0.01MM REMARK 210 ZNCL2; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.927, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATION, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 8 43.40 -108.55 REMARK 500 1 LEU A 12 43.25 -80.96 REMARK 500 1 CYS A 32 159.38 -46.03 REMARK 500 1 ASP A 34 -68.19 -131.97 REMARK 500 1 ALA A 37 -179.16 -63.04 REMARK 500 1 PRO A 40 86.83 -69.78 REMARK 500 1 ARG A 41 -75.67 -62.71 REMARK 500 1 TRP A 42 163.00 -47.35 REMARK 500 1 ASN A 46 -37.07 -38.99 REMARK 500 1 MET A 88 -71.75 -96.81 REMARK 500 1 THR A 91 -71.54 -43.26 REMARK 500 1 GLU A 98 33.72 -84.53 REMARK 500 1 GLN A 112 -35.41 -34.73 REMARK 500 1 TYR A 127 38.66 -84.74 REMARK 500 2 SER A 3 42.14 -94.68 REMARK 500 2 LEU A 12 45.77 -80.22 REMARK 500 2 ASP A 34 -59.13 -134.12 REMARK 500 2 PRO A 40 81.50 -69.75 REMARK 500 2 ARG A 41 -70.57 -56.66 REMARK 500 2 TRP A 42 173.01 -55.07 REMARK 500 2 MET A 88 -73.09 -76.27 REMARK 500 2 ALA A 93 -38.69 -38.42 REMARK 500 2 LEU A 96 -68.25 -108.36 REMARK 500 2 GLU A 98 34.91 -83.70 REMARK 500 2 TYR A 127 38.58 -84.39 REMARK 500 3 SER A 2 147.39 -170.80 REMARK 500 3 SER A 6 92.79 -47.98 REMARK 500 3 LEU A 12 48.04 -80.67 REMARK 500 3 GLU A 14 44.15 -80.34 REMARK 500 3 CYS A 32 161.93 -41.88 REMARK 500 3 ASP A 34 -54.36 -131.47 REMARK 500 3 PRO A 40 81.57 -69.74 REMARK 500 3 ARG A 41 -76.74 -58.36 REMARK 500 3 TRP A 42 168.33 -46.83 REMARK 500 3 MET A 88 -73.79 -63.08 REMARK 500 3 THR A 91 -72.00 -49.65 REMARK 500 3 GLU A 98 35.55 -84.85 REMARK 500 3 ASN A 104 35.78 -96.51 REMARK 500 3 TYR A 122 -61.22 -103.95 REMARK 500 3 TYR A 127 38.24 -82.23 REMARK 500 4 LYS A 8 41.84 -81.33 REMARK 500 4 ALA A 9 41.59 -103.47 REMARK 500 4 GLU A 14 46.94 -89.95 REMARK 500 4 CYS A 32 162.90 -46.64 REMARK 500 4 ASP A 34 -55.76 -134.30 REMARK 500 4 ALA A 37 177.28 -55.41 REMARK 500 4 PRO A 40 86.84 -69.71 REMARK 500 4 ARG A 41 -75.31 -65.35 REMARK 500 4 TRP A 42 171.28 -50.73 REMARK 500 4 MET A 88 -74.40 -74.52 REMARK 500 REMARK 500 THIS ENTRY HAS 273 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 32 SG REMARK 620 2 CYS A 35 SG 110.5 REMARK 620 3 CYS A 52 SG 119.5 95.3 REMARK 620 4 CYS A 55 SG 116.9 112.9 99.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001000987.1 RELATED DB: TARGETDB DBREF 2CRR A 8 135 UNP Q6PK24 Q6PK24_HUMAN 9 136 SEQADV 2CRR GLY A 1 UNP Q6PK24 CLONING ARTIFACT SEQADV 2CRR SER A 2 UNP Q6PK24 CLONING ARTIFACT SEQADV 2CRR SER A 3 UNP Q6PK24 CLONING ARTIFACT SEQADV 2CRR GLY A 4 UNP Q6PK24 CLONING ARTIFACT SEQADV 2CRR SER A 5 UNP Q6PK24 CLONING ARTIFACT SEQADV 2CRR SER A 6 UNP Q6PK24 CLONING ARTIFACT SEQADV 2CRR GLY A 7 UNP Q6PK24 CLONING ARTIFACT SEQADV 2CRR SER A 136 UNP Q6PK24 CLONING ARTIFACT SEQADV 2CRR GLY A 137 UNP Q6PK24 CLONING ARTIFACT SEQADV 2CRR PRO A 138 UNP Q6PK24 CLONING ARTIFACT SEQADV 2CRR SER A 139 UNP Q6PK24 CLONING ARTIFACT SEQADV 2CRR SER A 140 UNP Q6PK24 CLONING ARTIFACT SEQADV 2CRR GLY A 141 UNP Q6PK24 CLONING ARTIFACT SEQRES 1 A 141 GLY SER SER GLY SER SER GLY LYS ALA GLN LYS LEU ASN SEQRES 2 A 141 GLU GLN HIS GLN LEU ILE LEU SER LYS LEU LEU ARG GLU SEQRES 3 A 141 GLU ASP ASN LYS TYR CYS ALA ASP CYS GLU ALA LYS GLY SEQRES 4 A 141 PRO ARG TRP ALA SER TRP ASN ILE GLY VAL PHE ILE CYS SEQRES 5 A 141 ILE ARG CYS ALA GLY ILE HIS ARG ASN LEU GLY VAL HIS SEQRES 6 A 141 ILE SER ARG VAL LYS SER VAL ASN LEU ASP GLN TRP THR SEQRES 7 A 141 ALA GLU GLN ILE GLN CYS MET GLN ASP MET GLY ASN THR SEQRES 8 A 141 LYS ALA ARG LEU LEU TYR GLU ALA ASN LEU PRO GLU ASN SEQRES 9 A 141 PHE ARG ARG PRO GLN THR ASP GLN ALA VAL GLU PHE PHE SEQRES 10 A 141 ILE ARG ASP LYS TYR GLU LYS LYS LYS TYR TYR ASP LYS SEQRES 11 A 141 ASN ALA ILE ALA ILE SER GLY PRO SER SER GLY HET ZN A 401 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 GLN A 15 GLU A 26 1 12 HELIX 2 2 GLU A 27 LYS A 30 5 4 HELIX 3 3 CYS A 52 GLY A 63 1 12 HELIX 4 4 THR A 78 MET A 88 1 11 HELIX 5 5 MET A 88 TYR A 97 1 10 HELIX 6 6 GLU A 98 ASN A 100 5 3 HELIX 7 7 THR A 110 GLU A 123 1 14 HELIX 8 8 LYS A 130 ALA A 134 5 5 SHEET 1 A 2 ALA A 43 SER A 44 0 SHEET 2 A 2 VAL A 49 PHE A 50 -1 O VAL A 49 N SER A 44 LINK SG CYS A 32 ZN ZN A 401 1555 1555 2.34 LINK SG CYS A 35 ZN ZN A 401 1555 1555 2.37 LINK SG CYS A 52 ZN ZN A 401 1555 1555 2.31 LINK SG CYS A 55 ZN ZN A 401 1555 1555 2.36 SITE 1 AC1 4 CYS A 32 CYS A 35 CYS A 52 CYS A 55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1