HEADER TRANSLATION 20-MAY-05 2CRV TITLE SOLUTION STRUCTURE OF C-TERMINAL DOMAIN OF MITOCHONDRIAL TRANSLATIONAL TITLE 2 INITIATIONFACTOR 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLATION INITIATION FACTOR IF-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GTP_EFTU_D2; COMPND 5 SYNONYM: IF-2MT; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MTIF2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041206-04; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RIBOSOME, TRANSLATION, BETA BARREL, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CRV 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CRV 1 VERSN REVDAT 1 20-NOV-05 2CRV 0 JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF C-TERMINAL DOMAIN OF MITOCHONDRIAL JRNL TITL 2 TRANSLATIONAL INITIATIONFACTOR 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.0.7 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CRV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024553. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.30MM GTP_EFTU_D2 DOMAIN U REMARK 210 -13C,15N; 20MM TRISHCL, 100MM REMARK 210 NACL, 1MM DTT, 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.901, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H PHE A 46 O GLY A 58 1.54 REMARK 500 HD1 HIS A 65 O ASP A 78 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 25 -46.35 -174.67 REMARK 500 1 LYS A 26 170.31 -57.53 REMARK 500 1 HIS A 43 -51.38 -178.51 REMARK 500 1 LYS A 44 -172.35 -57.11 REMARK 500 1 ASN A 51 -0.83 80.11 REMARK 500 1 HIS A 65 50.33 -112.79 REMARK 500 1 HIS A 66 103.30 62.41 REMARK 500 1 LYS A 67 70.29 40.02 REMARK 500 1 ASP A 68 101.66 169.90 REMARK 500 1 GLU A 86 -34.50 -38.83 REMARK 500 1 ASN A 102 -66.14 -179.15 REMARK 500 1 LYS A 107 103.88 57.81 REMARK 500 1 SER A 109 125.58 -179.71 REMARK 500 1 ASP A 111 115.51 -174.28 REMARK 500 2 SER A 2 128.42 66.86 REMARK 500 2 LYS A 25 -46.80 -164.88 REMARK 500 2 LYS A 44 162.49 -42.09 REMARK 500 2 LEU A 63 107.90 -174.75 REMARK 500 2 HIS A 65 77.60 -100.56 REMARK 500 2 HIS A 66 -59.17 78.41 REMARK 500 2 LYS A 67 53.17 -162.00 REMARK 500 2 ASP A 94 -168.81 -119.64 REMARK 500 2 SER A 118 -59.46 -173.56 REMARK 500 3 SER A 2 -59.28 177.71 REMARK 500 3 ARG A 42 75.16 -64.63 REMARK 500 3 HIS A 43 -47.56 179.03 REMARK 500 3 LYS A 44 -179.33 -53.59 REMARK 500 3 ASN A 51 -0.06 79.88 REMARK 500 3 HIS A 65 67.05 -100.86 REMARK 500 3 HIS A 66 -60.30 79.88 REMARK 500 3 LYS A 67 76.29 -156.50 REMARK 500 3 ASP A 68 126.31 171.67 REMARK 500 3 PHE A 90 -164.50 -79.56 REMARK 500 3 LYS A 91 154.19 178.24 REMARK 500 3 LYS A 107 102.78 -173.45 REMARK 500 3 TRP A 110 162.83 69.85 REMARK 500 3 SER A 115 111.39 -172.55 REMARK 500 4 SER A 2 86.46 60.97 REMARK 500 4 LYS A 25 -54.78 -170.23 REMARK 500 4 LYS A 26 170.47 -56.76 REMARK 500 4 HIS A 43 -49.06 -178.68 REMARK 500 4 LYS A 44 176.83 -49.23 REMARK 500 4 ASN A 51 -24.45 88.47 REMARK 500 4 LEU A 63 115.23 -160.35 REMARK 500 4 HIS A 65 59.31 -105.42 REMARK 500 4 HIS A 66 -66.94 76.14 REMARK 500 4 ASP A 68 115.42 175.41 REMARK 500 4 LYS A 74 -172.01 -63.28 REMARK 500 4 ASN A 102 120.87 177.79 REMARK 500 4 LYS A 103 64.69 -163.46 REMARK 500 REMARK 500 THIS ENTRY HAS 256 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMI002017117.1 RELATED DB: TARGETDB DBREF 2CRV A 8 114 UNP Q91YJ5 IF2M_MOUSE 621 727 SEQADV 2CRV GLY A 1 UNP Q91YJ5 CLONING ARTIFACT SEQADV 2CRV SER A 2 UNP Q91YJ5 CLONING ARTIFACT SEQADV 2CRV SER A 3 UNP Q91YJ5 CLONING ARTIFACT SEQADV 2CRV GLY A 4 UNP Q91YJ5 CLONING ARTIFACT SEQADV 2CRV SER A 5 UNP Q91YJ5 CLONING ARTIFACT SEQADV 2CRV SER A 6 UNP Q91YJ5 CLONING ARTIFACT SEQADV 2CRV GLY A 7 UNP Q91YJ5 CLONING ARTIFACT SEQADV 2CRV SER A 115 UNP Q91YJ5 CLONING ARTIFACT SEQADV 2CRV GLY A 116 UNP Q91YJ5 CLONING ARTIFACT SEQADV 2CRV PRO A 117 UNP Q91YJ5 CLONING ARTIFACT SEQADV 2CRV SER A 118 UNP Q91YJ5 CLONING ARTIFACT SEQADV 2CRV SER A 119 UNP Q91YJ5 CLONING ARTIFACT SEQADV 2CRV GLY A 120 UNP Q91YJ5 CLONING ARTIFACT SEQRES 1 A 120 GLY SER SER GLY SER SER GLY TYR PRO ILE GLY GLU ALA SEQRES 2 A 120 SER ILE LEU ALA THR PHE THR VAL THR GLU GLY LYS LYS SEQRES 3 A 120 LYS ILE PRO VAL ALA ASP CYS ARG VAL GLN LYS GLY GLN SEQRES 4 A 120 LEU GLU ARG HIS LYS LYS PHE LYS LEU ILE ARG ASN GLY SEQRES 5 A 120 GLN VAL ILE TRP LYS GLY SER LEU THR SER LEU LYS HIS SEQRES 6 A 120 HIS LYS ASP ASP ILE SER VAL ILE LYS THR GLY MET ASP SEQRES 7 A 120 CYS GLY LEU SER LEU ASP GLU GLU LYS VAL GLU PHE LYS SEQRES 8 A 120 PRO GLY ASP GLN VAL ILE CYS TYR GLU GLU ASN LYS VAL SEQRES 9 A 120 PRO THR LYS THR SER TRP ASP PRO GLY PHE SER GLY PRO SEQRES 10 A 120 SER SER GLY SHEET 1 A 7 GLN A 53 GLY A 58 0 SHEET 2 A 7 PHE A 46 ARG A 50 -1 N PHE A 46 O GLY A 58 SHEET 3 A 7 ASP A 94 TYR A 99 -1 O GLN A 95 N ILE A 49 SHEET 4 A 7 PRO A 9 GLU A 23 -1 N ALA A 13 O VAL A 96 SHEET 5 A 7 LYS A 26 LYS A 37 -1 O VAL A 30 N PHE A 19 SHEET 6 A 7 ASP A 78 SER A 82 -1 O CYS A 79 N CYS A 33 SHEET 7 A 7 SER A 62 LYS A 64 -1 N LYS A 64 O GLY A 80 SHEET 1 B 2 LEU A 40 GLU A 41 0 SHEET 2 B 2 VAL A 72 ILE A 73 -1 O ILE A 73 N LEU A 40 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1