HEADER TRANSFERASE 20-MAY-05 2CS2 TITLE SOLUTION STRUCTURE OF THE SECOND ZN-FINGER DOMAIN OF POLY(ADP-RIBOSE) TITLE 2 POLYMERASE-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY [ADP-RIBOSE] POLYMERASE-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-PARP; COMPND 5 SYNONYM: PARP-1, ADPRT, NAD+, ADP-RIBOSYLTRANSFERASE-1, POLY[ADP- COMPND 6 RIBOSE] SYNTHETASE-1; COMPND 7 EC: 2.4.2.30; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARP1, ADPRT, PPOL; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040809-08; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS DNA BIND, DNA REPAIR, NECROSIS, APOPTOSIS, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CS2 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2CS2 1 VERSN REVDAT 1 20-NOV-05 2CS2 0 JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND ZN-FINGER DOMAIN OF JRNL TITL 2 POLY(ADP-RIBOSE) POLYMERASE-1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CS2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024559. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM ZF-PARP DOMAIN U-13C,15N; REMARK 210 20MM TRISHCL, 100MM NACL, 1MM REMARK 210 DTT, 0.02% NAN3, 0.1MM ZNCL2; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.901, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 17 -39.35 -38.26 REMARK 500 1 ALA A 23 92.31 -65.44 REMARK 500 1 ASN A 26 45.67 -95.30 REMARK 500 1 ASN A 71 33.63 -99.08 REMARK 500 1 LEU A 92 167.75 -47.46 REMARK 500 1 PRO A 105 2.53 -69.78 REMARK 500 1 LYS A 108 132.72 -172.41 REMARK 500 1 PRO A 131 -174.76 -69.82 REMARK 500 2 SER A 9 60.29 -119.74 REMARK 500 2 LYS A 13 43.72 -82.85 REMARK 500 2 ASN A 26 42.56 -82.58 REMARK 500 2 SER A 28 144.82 -37.91 REMARK 500 2 MET A 34 47.82 70.37 REMARK 500 2 LYS A 36 153.08 -49.35 REMARK 500 2 LYS A 87 105.52 -55.91 REMARK 500 2 LEU A 92 165.57 -48.06 REMARK 500 2 LYS A 114 156.36 -38.82 REMARK 500 2 LYS A 126 149.98 -171.64 REMARK 500 2 PRO A 131 -174.82 -69.79 REMARK 500 3 ASN A 26 48.14 -82.99 REMARK 500 3 SER A 28 157.85 -38.37 REMARK 500 3 LYS A 53 75.04 -114.37 REMARK 500 3 LEU A 104 76.88 -112.08 REMARK 500 3 LYS A 128 111.23 -36.17 REMARK 500 3 SER A 129 172.80 -48.27 REMARK 500 3 PRO A 131 -172.59 -69.79 REMARK 500 4 ALA A 11 42.17 -95.63 REMARK 500 4 ASN A 26 45.33 -81.53 REMARK 500 4 ASN A 71 31.94 -87.89 REMARK 500 4 ARG A 78 156.19 -49.41 REMARK 500 4 LEU A 92 166.05 -44.47 REMARK 500 4 LEU A 104 76.23 -109.75 REMARK 500 4 PRO A 105 3.03 -69.75 REMARK 500 4 ALA A 125 104.05 -42.53 REMARK 500 4 SER A 133 116.79 -172.95 REMARK 500 5 SER A 9 122.57 -170.34 REMARK 500 5 LYS A 13 42.32 -83.52 REMARK 500 5 ASN A 26 40.32 -82.53 REMARK 500 5 LEU A 86 109.01 -52.05 REMARK 500 5 LYS A 108 136.64 -170.41 REMARK 500 5 GLU A 110 39.80 -99.66 REMARK 500 5 PRO A 131 -174.25 -69.80 REMARK 500 6 GLU A 12 -34.79 -130.44 REMARK 500 6 ASN A 26 39.64 -84.06 REMARK 500 6 LEU A 92 172.24 -49.69 REMARK 500 6 THR A 94 -33.36 -34.05 REMARK 500 6 VAL A 107 157.04 -38.14 REMARK 500 6 ASP A 116 112.44 -165.40 REMARK 500 6 GLU A 123 44.95 -106.31 REMARK 500 6 VAL A 124 54.46 33.18 REMARK 500 REMARK 500 THIS ENTRY HAS 189 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 30 SG REMARK 620 2 CYS A 33 SG 104.1 REMARK 620 3 HIS A 64 ND1 107.2 108.2 REMARK 620 4 CYS A 67 SG 111.3 109.3 116.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001003531.4 RELATED DB: TARGETDB DBREF 2CS2 A 8 128 UNP P09874 PARP1_HUMAN 102 222 SEQADV 2CS2 GLY A 1 UNP P09874 CLONING ARTIFACT SEQADV 2CS2 SER A 2 UNP P09874 CLONING ARTIFACT SEQADV 2CS2 SER A 3 UNP P09874 CLONING ARTIFACT SEQADV 2CS2 GLY A 4 UNP P09874 CLONING ARTIFACT SEQADV 2CS2 SER A 5 UNP P09874 CLONING ARTIFACT SEQADV 2CS2 SER A 6 UNP P09874 CLONING ARTIFACT SEQADV 2CS2 GLY A 7 UNP P09874 CLONING ARTIFACT SEQADV 2CS2 SER A 129 UNP P09874 CLONING ARTIFACT SEQADV 2CS2 GLY A 130 UNP P09874 CLONING ARTIFACT SEQADV 2CS2 PRO A 131 UNP P09874 CLONING ARTIFACT SEQADV 2CS2 SER A 132 UNP P09874 CLONING ARTIFACT SEQADV 2CS2 SER A 133 UNP P09874 CLONING ARTIFACT SEQADV 2CS2 GLY A 134 UNP P09874 CLONING ARTIFACT SEQRES 1 A 134 GLY SER SER GLY SER SER GLY GLY SER LYS ALA GLU LYS SEQRES 2 A 134 THR LEU GLY ASP PHE ALA ALA GLU TYR ALA LYS SER ASN SEQRES 3 A 134 ARG SER THR CYS LYS GLY CYS MET GLU LYS ILE GLU LYS SEQRES 4 A 134 GLY GLN VAL ARG LEU SER LYS LYS MET VAL ASP PRO GLU SEQRES 5 A 134 LYS PRO GLN LEU GLY MET ILE ASP ARG TRP TYR HIS PRO SEQRES 6 A 134 GLY CYS PHE VAL LYS ASN ARG GLU GLU LEU GLY PHE ARG SEQRES 7 A 134 PRO GLU TYR SER ALA SER GLN LEU LYS GLY PHE SER LEU SEQRES 8 A 134 LEU ALA THR GLU ASP LYS GLU ALA LEU LYS LYS GLN LEU SEQRES 9 A 134 PRO GLY VAL LYS SER GLU GLY LYS ARG LYS GLY ASP GLU SEQRES 10 A 134 VAL ASP GLY VAL ASP GLU VAL ALA LYS LYS LYS SER GLY SEQRES 11 A 134 PRO SER SER GLY HET ZN A 200 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 HIS A 64 ASN A 71 1 8 HELIX 2 2 SER A 82 SER A 84 5 3 HELIX 3 3 ALA A 93 LYS A 102 1 10 SHEET 1 A 4 MET A 58 TYR A 63 0 SHEET 2 A 4 VAL A 42 VAL A 49 -1 N LEU A 44 O TYR A 63 SHEET 3 A 4 LEU A 15 TYR A 22 -1 N GLU A 21 O ARG A 43 SHEET 4 A 4 LEU A 86 LYS A 87 1 O LYS A 87 N ALA A 20 LINK SG CYS A 30 ZN ZN A 200 1555 1555 2.35 LINK SG CYS A 33 ZN ZN A 200 1555 1555 2.28 LINK ND1 HIS A 64 ZN ZN A 200 1555 1555 2.05 LINK SG CYS A 67 ZN ZN A 200 1555 1555 2.31 SITE 1 AC1 4 CYS A 30 CYS A 33 HIS A 64 CYS A 67 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1